Spo00178.1 (mRNA) | SpinachBase

Overview


Name	Spo00178.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 30876655 .. 30881784 (+)
Sequence length	3284

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGGATCTGGAGGGATTTCCTTATTTCCTCTCCTAAGACAGACTTTTTTTTCTTAGCTCAAATTTTAAACATACACTAAATGTGGGTGACTATAGCCAGTAGATCGGATCGAATCGAATCGGATCGGATTGAATCGGATCGGATTGAATTGGATCCATCTAATCAGGCTCTTCTTAGCCCCGACTCGGATGAAGAGCAATCAAAATCTAAATGTGGGTGACTATAGCCAGTAGCCATAGCTTGCAAAAATCTACTGTAGTCCTTCATCCTCCCCCCATTTTAATTTCTGCCACCAATATTTTTCTCAGTAGCATCAAATTCAATGAAGGCAACATTCTTTCTTTCACCTTCAAACATCCAATTAATTTCAACCCCATTTCTTGATTCTTTCCCTTCTTCGCCCTTTTCTTTCCCTACTAAACCCCTTATCCTCAAAAACCCAAAACCCCTAAATTCTCTCTCCTCCAATGCTTCTTCTTTCTTCCTCCAAAGTCGATCCTTCAACACCAAAAACAGCGATGATAATATCAATGCGGATGATGAAATTAGCGAGGATAATAATACTAATAACAACAACAATGGAAGTACGATTTCAAATAGTAGTAATCAGGTTAAAATGCCGACTGCTCCATGGATGAAATCTCCCCTTTTACTTCCGCCTGATGAAGTTCTTGACCTCTCAAAACCTAATCAGAGGAAGAAGAAAATCTCCATTGCGGAAGCTTCTAAAGCTGATAGGTCACTTACGGAGAAAATTAGTGGAAGGAAGGGTAAGAAAGTAATAAAGAAAATAGTTCACAAAATTGAAAGGCTTCAAACTGAAACTAATTTGGTTGATACCAAGAAAAACTGGGTTGATACCCAGAAAAATTGGGATGATGTTGGAGGTGGGTTTTTGTTGGGTGATGGCGGGGAGTCAAAATTGGCGCGAAAACTGCCATGGGAGAAGGAAGAGAAGCTGGTTTTTGGGAGGTTAAAGAGAGAGAAAGTGGTTACGGAGGCTGAATTGAGGTTGGATGAGGAATTGTTGAAGAGATTGAGGAGAGAAGCCTCAAAGATGAGGAAGTGGGTTAAGGTGAAGAAAATTGGCTTTTCTCAAGATGTTGTGGATGAGGTTCATTCAATTTGGGCTAACAGTGAGCTTGTTATGCTTAATTTTGATTTGCCTTTGTGTAGAAATATGGATAGAGCGCGGGAAATTGTTGAGGTTTGTTGCTAATTTACTAAATTTAATTTCTTTTAGATTTTAAATATGCAGTATCATATTTTCCGAGTATGTAATTGGTTAAGGAAGTATATAGACTAATAGAGAAAGGAAGGGTTGCTAGATTTATATCTCTTTAGTATCATGTTTAACTGATATGATCATGCTATGCTGAGTCTTTCCAGAGGCATAATGAGTGGTGCCAAATTATGTGGTTTATGTGATATATGCTGAGTTTGATGTTGTAATTACTTTTTGTATTCAGATGAAAACGGGAGGTTTAGTTGTGTGGAGTAAGAAAGATAATCTGGTTGCGTATAGAGGGTGCGATTATCTTTCAAGGAGGTGGTCTCGAAAGGGTAGGGTTTCTGTTCAACCTGCAGATGATGGACAAATGCCTGGTTTCACTGTTGATGAAGAGAAGTTGGATGTTAACTTGACTTATTCTGAACAAAGCTATAAGCTTGAAACTAAGGACATAGAAAAGGATTCTTCGTCAGATGGGTTATTGATGGACAGGAATTTGGGGATTAAACTGACTGATAGATCACTGTATGAGAGGGAAGGCGATAGATTATTGGATGGCTTGGGACCTCGTTTTGTTGACTGGTGGTATCCAAAGCCTTTGCCGGTGGATGGAGACCTGCTACCAGAGGTAGTTCCTGGATTCAAGCCACCGTTTAGGCTTTGCCCACCTCGTGTTCGGCCCCAGTTGATGGATGATGAGCTCACATACCTGAGGAAACTTGCTCGCCCTTTACCAGTACACTTTGTCCTTGGTATTTTCTGGGTGGCTCTGAGGCTAAAGCATCTTATATATAGTGGTGTTTTTTAGTAAAGCATTGACATCTTTTTGATGCATTTACAGTTTAAGATATATGCTTGTTAGACCAATTAATGTTGTTTATGGCCTATTGCAAATTTGGCAGATTTTACCAATGAATAGAAGCTCGCGATCTTATGATTGAACACCAATGCTCTTATTTTGCAAAGGACTAGGAACTTAAATATGTTGAGAACCCAAGTATTATGATGATGAATTGTGTTGGAAGAATGTTAGATACACGAAGTAGTGGCTCCTTTTAGGTCTTTGAATTTATATTTTCTTGTATTATTTCTGAATTTCTCCCCACATGAATCTTTGTTTCTTATAGAACAAAGTGTGCACATATGTTTTGTTTATATGGTGAACAAATATTTACCAGTATAAAACTTATGAGGCATTGATTACTGTAATTTTGATGTTATTGAACTTTGAGTATATCTCATTTTTGTTGCATGGTTTTCTAGTTATACCTTTACAACTGCTTGCATCAGGGTCCGAACTGGGTGCTGTAGTTGTGACCGACCCTGCATGTTACTGTTTTTTGTGTTTGGTGTGCTTACCATTAAATATTGACCTGTTTTCATTGTCTTTCTGCGTCGATAGGAAGGAACTCCAAACTTCAAGGTCTTGCTGTTGCCATCTTGAAATTGTGGGAGAAAAGCGTATTTGCCAAAATTGCTGTGAAGTGGGGTGTCCCTAATACCAATAACGAATTCATGTCCTCTGAGCTCAAGGCAAGTCATTTTCCCATAAAAGTATGATAGTTTGTATAATTGTATGTCGGTTCAGATTTCAGATGCATCAGCTGCTGAATTGGGTCTTCTGTTGTTAGATTCTTGCTTGTTCTATTACGAAAAATAGGATATCATGAAAAAATGTAGAGGCTTTATCTTTTGTGACATAATACGCAAGAATATACATTCCCTTGTGCAATTAAACAGCTTTTCAGATGCTCGTGTGAGTGTGTTATTATATAGTTTTAATGTTTTTTGACTTCGTAACCAGTCTAATTAGCTTCTACGACTTCTGTCCTACAAACCCCAAATTTTGAAGGGAGGAACTTGATGTTATCTTACTTTGAACTAAAATCTATAAGTAAGAATTATCTTATAGTATAGTTTTGAACTTTTTTGAAAATCATACTAAGGTTTTTACTATTGCGATGAACACAATGCCAATAGATTTTAAAGAAGAATTGGTCCTTCTCCATGAAGGATAAAGTTCTGAGTCATACTTCTGATATGTGTGAGAAGATTTCATACAGTAACATGTATTATCTGCAGCATCTTACAGGAGGAGTTCTATTACTGCGTAACAAGTTCTTCATCGTTCTCTACAGAGGCAAGGATTTCTTACCAGGCAATGTTGCAAATGCTGTAATTGAGAGGGAAATAGAGCTCCATCAGTGGCAACTTCATGAAGAAGACGCACGGCTTAAAGCATCAGGGGTTCTTGATTTTAATGATGAAACATCAGCAGATAGAAGTATCGTTGGAACATTTTCAGAATTCCAACACATCCAAACGATTTGCAGGAATGTACACCACATAAACAACGAGGCTGCAGTTAAGATAGAAGCTGAAAAAGAAAGATTAGAGAAGGAATTAAGAAAGCAAGAACACAAACTTGCCATTGTAAGAGTCATACTTTTTATTCTGCTTCAACTTTATACTCCTTTGGGTTAATTTAGCTGAAAAAATTTGTGCTGAATTTGCAGCTCAAACTCAAAATTGTGAAGGCAGAAAAAGATCTAGGGAAATTAGATTCCGCCTGGATGTCTTCTGAACAAGAGCCTGATCAAGAATTGATAACTGAAGAGGAGAGAGAGTGTTTCAGGAAGATAGGTTTGAAGATGGACAACATTCTAGTTTTGGGTAAGAAATGACATGATATTTGAAATATTTTTGCAAAAGTTGTTTGTTTAGTTTTGTCAATGGCATGTCAACTACTAAGTAATTGGTTTGATTATCTTGTTGTTCTCAGGGAGACGAGGGGTCTTTGATGGAGTAATAGAAGGTGTACACCAGCACTGGAAGCACAGAGAACTTGTGAAAGTTATTTCAATGCAGAGATCATTTCTACAGGTCCTTTATACTGCTAGATCACTGGAAAGAGAGAGTGGTGGAATACTAGTATGCATCGAGAAGCTAAAGAAAGGCCACGCCATTATTATCTACCGCGGGAAAAACTACAAGCGTCCCATTGATTTTGGTGGAGATCTACTTAATAAAAGGAAAGCACTGAAACGATCTCTTGAAGTTCAAAGACTTGGAGTGAGTAAAACTCTTAAAACTTGCATTTTCGTTTGATTTTGGTTTAATACTTGGTAAATACTTATTTTTATTTGTTTTATGTTGTTTCCCACCAGTCCCTTAAATTTTTTGCTTATCAAAGGGATAAGGAAATAGCAGAATTGAAGCTCAAACTGGTTAGATTGGCTTCATACTTTAGTTTCAAATCTCATTTTAGATTTTCTTTTGTGCATCTCAAATTCTCATGCCCATGAACTTCATTAAACCTCTGCAGGTTGATTTAAAGAGTAGGCGCAACAAAAACTTCTGAAACTATACACGATGGTTGAGGTAGGATACCAAGTATAGGAGTTTGAATACTTCCAGCTCCAACGCTTGTGCTCTCAGGAAATGACTCAAATTCCAGCTGCAGTCCATTGATATTAATTATTAAACTGTCAATAGATCCTAGCAGGCAAAAGATCAAGTGCCTGCTGGATTCATTTAGGTGAGGAAATGTAATGTTCCTTGTGGATATGTGCTCAGAATACGAAACCACACATGAATATCAGATGATAGATTCTTCTTCTATGATGCAATGTTGTACAAGTCTGCAAAGTTCACATTTTTATTACAGTCAATGATTAGAAGATACAAATACAGTGAATGATTGTGAATATTTGTACATTCTTTGAATACTTATCTCATCAATCTAATTATCTAAATCAAATTTGTTTCGGGTTTTCACTTATTTTTACATCCGAATTATTCGAGGTTTTATTTAATTTGGTAAATAATCAATCAAATTGAAACACCTGGAATTTCAAAATTAACAGGGTCTAAGCACAGTTTTGATGTAATTCCCCT

mRNA sequence

TTTGGGATCTGGAGGGATTTCCTTATTTCCTCTCCTAAGACAGACTTTTTTTTCTTAGCTCAAATTTTAAACATACACTAAATGTGGGTGACTATAGCCAGTAGATCGGATCGAATCGAATCGGATCGGATTGAATCGGATCGGATTGAATTGGATCCATCTAATCAGGCTCTTCTTAGCCCCGACTCGGATGAAGAGCAATCAAAATCTAAATGTGGGTGACTATAGCCAGTAGCCATAGCTTGCAAAAATCTACTGTAGTCCTTCATCCTCCCCCCATTTTAATTTCTGCCACCAATATTTTTCTCAGTAGCATCAAATTCAATGAAGGCAACATTCTTTCTTTCACCTTCAAACATCCAATTAATTTCAACCCCATTTCTTGATTCTTTCCCTTCTTCGCCCTTTTCTTTCCCTACTAAACCCCTTATCCTCAAAAACCCAAAACCCCTAAATTCTCTCTCCTCCAATGCTTCTTCTTTCTTCCTCCAAAGTCGATCCTTCAACACCAAAAACAGCGATGATAATATCAATGCGGATGATGAAATTAGCGAGGATAATAATACTAATAACAACAACAATGGAAGTACGATTTCAAATAGTAGTAATCAGGTTAAAATGCCGACTGCTCCATGGATGAAATCTCCCCTTTTACTTCCGCCTGATGAAGTTCTTGACCTCTCAAAACCTAATCAGAGGAAGAAGAAAATCTCCATTGCGGAAGCTTCTAAAGCTGATAGGTCACTTACGGAGAAAATTAGTGGAAGGAAGGGTAAGAAAGTAATAAAGAAAATAGTTCACAAAATTGAAAGGCTTCAAACTGAAACTAATTTGGTTGATACCAAGAAAAACTGGGTTGATACCCAGAAAAATTGGGATGATGTTGGAGGTGGGTTTTTGTTGGGTGATGGCGGGGAGTCAAAATTGGCGCGAAAACTGCCATGGGAGAAGGAAGAGAAGCTGGTTTTTGGGAGGTTAAAGAGAGAGAAAGTGGTTACGGAGGCTGAATTGAGGTTGGATGAGGAATTGTTGAAGAGATTGAGGAGAGAAGCCTCAAAGATGAGGAAGTGGGTTAAGGTGAAGAAAATTGGCTTTTCTCAAGATGTTGTGGATGAGGTTCATTCAATTTGGGCTAACAGTGAGCTTGTTATGCTTAATTTTGATTTGCCTTTGTGTAGAAATATGGATAGAGCGCGGGAAATTGTTGAGATGAAAACGGGAGGTTTAGTTGTGTGGAGTAAGAAAGATAATCTGGTTGCGTATAGAGGGTGCGATTATCTTTCAAGGAGGTGGTCTCGAAAGGGTAGGGTTTCTGTTCAACCTGCAGATGATGGACAAATGCCTGGTTTCACTGTTGATGAAGAGAAGTTGGATGTTAACTTGACTTATTCTGAACAAAGCTATAAGCTTGAAACTAAGGACATAGAAAAGGATTCTTCGTCAGATGGGTTATTGATGGACAGGAATTTGGGGATTAAACTGACTGATAGATCACTGTATGAGAGGGAAGGCGATAGATTATTGGATGGCTTGGGACCTCGTTTTGTTGACTGGTGGTATCCAAAGCCTTTGCCGGTGGATGGAGACCTGCTACCAGAGGTAGTTCCTGGATTCAAGCCACCGTTTAGGCTTTGCCCACCTCGTGTTCGGCCCCAGTTGATGGATGATGAGCTCACATACCTGAGGAAACTTGCTCGCCCTTTACCAGTACACTTTGTCCTTGGAAGGAACTCCAAACTTCAAGGTCTTGCTGTTGCCATCTTGAAATTGTGGGAGAAAAGCGTATTTGCCAAAATTGCTGTGAAGTGGGGTGTCCCTAATACCAATAACGAATTCATGTCCTCTGAGCTCAAGCATCTTACAGGAGGAGTTCTATTACTGCGTAACAAGTTCTTCATCGTTCTCTACAGAGGCAAGGATTTCTTACCAGGCAATGTTGCAAATGCTGTAATTGAGAGGGAAATAGAGCTCCATCAGTGGCAACTTCATGAAGAAGACGCACGGCTTAAAGCATCAGGGGTTCTTGATTTTAATGATGAAACATCAGCAGATAGAAGTATCGTTGGAACATTTTCAGAATTCCAACACATCCAAACGATTTGCAGGAATGTACACCACATAAACAACGAGGCTGCAGTTAAGATAGAAGCTGAAAAAGAAAGATTAGAGAAGGAATTAAGAAAGCAAGAACACAAACTTGCCATTCTCAAACTCAAAATTGTGAAGGCAGAAAAAGATCTAGGGAAATTAGATTCCGCCTGGATGTCTTCTGAACAAGAGCCTGATCAAGAATTGATAACTGAAGAGGAGAGAGAGTGTTTCAGGAAGATAGGTTTGAAGATGGACAACATTCTAGTTTTGGGGAGACGAGGGGTCTTTGATGGAGTAATAGAAGGTGTACACCAGCACTGGAAGCACAGAGAACTTGTGAAAGTTATTTCAATGCAGAGATCATTTCTACAGGTCCTTTATACTGCTAGATCACTGGAAAGAGAGAGTGGTGGAATACTAGTATGCATCGAGAAGCTAAAGAAAGGCCACGCCATTATTATCTACCGCGGGAAAAACTACAAGCGTCCCATTGATTTTGGTGGAGATCTACTTAATAAAAGGAAAGCACTGAAACGATCTCTTGAAGTTCAAAGACTTGGATCCCTTAAATTTTTTGCTTATCAAAGGGATAAGGAAATAGCAGAATTGAAGCTCAAACTGGTTGATTTAAAGAGTAGGCGCAACAAAAACTTCTGAAACTATACACGATGGTTGAGGTAGGATACCAAGTATAGGAGTTTGAATACTTCCAGCTCCAACGCTTGTGCTCTCAGGAAATGACTCAAATTCCAGCTGCAGTCCATTGATATTAATTATTAAACTGTCAATAGATCCTAGCAGGCAAAAGATCAAGTGCCTGCTGGATTCATTTAGGTGAGGAAATGTAATGTTCCTTGTGGATATGTGCTCAGAATACGAAACCACACATGAATATCAGATGATAGATTCTTCTTCTATGATGCAATGTTGTACAAGTCTGCAAAGTTCACATTTTTATTACAGTCAATGATTAGAAGATACAAATACAGTGAATGATTGTGAATATTTGTACATTCTTTGAATACTTATCTCATCAATCTAATTATCTAAATCAAATTTGTTTCGGGTTTTCACTTATTTTTACATCCGAATTATTCGAGGTTTTATTTAATTTGGTAAATAATCAATCAAATTGAAACACCTGGAATTTCAAAATTAACAGGGTCTAAGCACAGTTTTGATGTAATTCCCCT

Coding sequence (CDS)

ATGAAGGCAACATTCTTTCTTTCACCTTCAAACATCCAATTAATTTCAACCCCATTTCTTGATTCTTTCCCTTCTTCGCCCTTTTCTTTCCCTACTAAACCCCTTATCCTCAAAAACCCAAAACCCCTAAATTCTCTCTCCTCCAATGCTTCTTCTTTCTTCCTCCAAAGTCGATCCTTCAACACCAAAAACAGCGATGATAATATCAATGCGGATGATGAAATTAGCGAGGATAATAATACTAATAACAACAACAATGGAAGTACGATTTCAAATAGTAGTAATCAGGTTAAAATGCCGACTGCTCCATGGATGAAATCTCCCCTTTTACTTCCGCCTGATGAAGTTCTTGACCTCTCAAAACCTAATCAGAGGAAGAAGAAAATCTCCATTGCGGAAGCTTCTAAAGCTGATAGGTCACTTACGGAGAAAATTAGTGGAAGGAAGGGTAAGAAAGTAATAAAGAAAATAGTTCACAAAATTGAAAGGCTTCAAACTGAAACTAATTTGGTTGATACCAAGAAAAACTGGGTTGATACCCAGAAAAATTGGGATGATGTTGGAGGTGGGTTTTTGTTGGGTGATGGCGGGGAGTCAAAATTGGCGCGAAAACTGCCATGGGAGAAGGAAGAGAAGCTGGTTTTTGGGAGGTTAAAGAGAGAGAAAGTGGTTACGGAGGCTGAATTGAGGTTGGATGAGGAATTGTTGAAGAGATTGAGGAGAGAAGCCTCAAAGATGAGGAAGTGGGTTAAGGTGAAGAAAATTGGCTTTTCTCAAGATGTTGTGGATGAGGTTCATTCAATTTGGGCTAACAGTGAGCTTGTTATGCTTAATTTTGATTTGCCTTTGTGTAGAAATATGGATAGAGCGCGGGAAATTGTTGAGATGAAAACGGGAGGTTTAGTTGTGTGGAGTAAGAAAGATAATCTGGTTGCGTATAGAGGGTGCGATTATCTTTCAAGGAGGTGGTCTCGAAAGGGTAGGGTTTCTGTTCAACCTGCAGATGATGGACAAATGCCTGGTTTCACTGTTGATGAAGAGAAGTTGGATGTTAACTTGACTTATTCTGAACAAAGCTATAAGCTTGAAACTAAGGACATAGAAAAGGATTCTTCGTCAGATGGGTTATTGATGGACAGGAATTTGGGGATTAAACTGACTGATAGATCACTGTATGAGAGGGAAGGCGATAGATTATTGGATGGCTTGGGACCTCGTTTTGTTGACTGGTGGTATCCAAAGCCTTTGCCGGTGGATGGAGACCTGCTACCAGAGGTAGTTCCTGGATTCAAGCCACCGTTTAGGCTTTGCCCACCTCGTGTTCGGCCCCAGTTGATGGATGATGAGCTCACATACCTGAGGAAACTTGCTCGCCCTTTACCAGTACACTTTGTCCTTGGAAGGAACTCCAAACTTCAAGGTCTTGCTGTTGCCATCTTGAAATTGTGGGAGAAAAGCGTATTTGCCAAAATTGCTGTGAAGTGGGGTGTCCCTAATACCAATAACGAATTCATGTCCTCTGAGCTCAAGCATCTTACAGGAGGAGTTCTATTACTGCGTAACAAGTTCTTCATCGTTCTCTACAGAGGCAAGGATTTCTTACCAGGCAATGTTGCAAATGCTGTAATTGAGAGGGAAATAGAGCTCCATCAGTGGCAACTTCATGAAGAAGACGCACGGCTTAAAGCATCAGGGGTTCTTGATTTTAATGATGAAACATCAGCAGATAGAAGTATCGTTGGAACATTTTCAGAATTCCAACACATCCAAACGATTTGCAGGAATGTACACCACATAAACAACGAGGCTGCAGTTAAGATAGAAGCTGAAAAAGAAAGATTAGAGAAGGAATTAAGAAAGCAAGAACACAAACTTGCCATTCTCAAACTCAAAATTGTGAAGGCAGAAAAAGATCTAGGGAAATTAGATTCCGCCTGGATGTCTTCTGAACAAGAGCCTGATCAAGAATTGATAACTGAAGAGGAGAGAGAGTGTTTCAGGAAGATAGGTTTGAAGATGGACAACATTCTAGTTTTGGGGAGACGAGGGGTCTTTGATGGAGTAATAGAAGGTGTACACCAGCACTGGAAGCACAGAGAACTTGTGAAAGTTATTTCAATGCAGAGATCATTTCTACAGGTCCTTTATACTGCTAGATCACTGGAAAGAGAGAGTGGTGGAATACTAGTATGCATCGAGAAGCTAAAGAAAGGCCACGCCATTATTATCTACCGCGGGAAAAACTACAAGCGTCCCATTGATTTTGGTGGAGATCTACTTAATAAAAGGAAAGCACTGAAACGATCTCTTGAAGTTCAAAGACTTGGATCCCTTAAATTTTTTGCTTATCAAAGGGATAAGGAAATAGCAGAATTGAAGCTCAAACTGGTTGATTTAAAGAGTAGGCGCAACAAAAACTTCTGA

Protein sequence

MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQSRSFNTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLSKPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWVDTQKNWDDVGGGFLLGDGGESKLARKLPWEKEEKLVFGRLKREKVVTEAELRLDEELLKRLRREASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEMKTGGLVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGFTVDEEKLDVNLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGDLLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAELKLKLVDLKSRRNKNF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo00178	Spo00178	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo00178.1	Spo00178.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00178.1.exon.1	Spo00178.1.exon.1	exon
Spo00178.1.exon.2	Spo00178.1.exon.2	exon
Spo00178.1.exon.3	Spo00178.1.exon.3	exon
Spo00178.1.exon.4	Spo00178.1.exon.4	exon
Spo00178.1.exon.5	Spo00178.1.exon.5	exon
Spo00178.1.exon.6	Spo00178.1.exon.6	exon
Spo00178.1.exon.7	Spo00178.1.exon.7	exon
Spo00178.1.exon.8	Spo00178.1.exon.8	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00178.1.utr5p.1	Spo00178.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00178.1.CDS.1	Spo00178.1.CDS.1	CDS
Spo00178.1.CDS.2	Spo00178.1.CDS.2	CDS
Spo00178.1.CDS.3	Spo00178.1.CDS.3	CDS
Spo00178.1.CDS.4	Spo00178.1.CDS.4	CDS
Spo00178.1.CDS.5	Spo00178.1.CDS.5	CDS
Spo00178.1.CDS.6	Spo00178.1.CDS.6	CDS
Spo00178.1.CDS.7	Spo00178.1.CDS.7	CDS
Spo00178.1.CDS.8	Spo00178.1.CDS.8	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo00178.1.utr3p.1	Spo00178.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo00178.1 vs. NCBI nr
Match: gi|902158642|gb|KNA06242.1| (hypothetical protein SOVF_182920 [Spinacia oleracea])

HSP 1 Score: 1573.5 bits (4073), Expect = 0.000e+0
Identity = 806/807 (99.88%), Postives = 806/807 (99.88%), Query Frame = 1


		  
Query: 1   MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQSRSF 60
           MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQ RSF
Sbjct: 1   MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQIRSF 60

Query: 61  NTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLS 120
           NTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLS
Sbjct: 61  NTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLS 120

Query: 121 KPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWVDT 180
           KPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWVDT
Sbjct: 121 KPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWVDT 180

Query: 181 QKNWDDVGGGFLLGDGGESKLARKLPWEKEEKLVFGRLKREKVVTEAELRLDEELLKRLR 240
           QKNWDDVGGGFLLGDGGESKLARKLPWEKEEKLVFGRLKREKVVTEAELRLDEELLKRLR
Sbjct: 181 QKNWDDVGGGFLLGDGGESKLARKLPWEKEEKLVFGRLKREKVVTEAELRLDEELLKRLR 240

Query: 241 REASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEMKTGG 300
           REASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEMKTGG
Sbjct: 241 REASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEMKTGG 300

Query: 301 LVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGFTVDEEKLDVNLTYSEQSY 360
           LVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGFTVDEEKLDVNLTYSEQSY
Sbjct: 301 LVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGFTVDEEKLDVNLTYSEQSY 360

Query: 361 KLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDG 420
           KLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDG
Sbjct: 361 KLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDG 420

Query: 421 DLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAIL 480
           DLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAIL
Sbjct: 421 DLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAIL 480

Query: 481 KLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVAN 540
           KLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVAN
Sbjct: 481 KLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVAN 540

Query: 541 AVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHIN 600
           AVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHIN
Sbjct: 541 AVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHIN 600

Query: 601 NEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITE 660
           NEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITE
Sbjct: 601 NEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITE 660

Query: 661 EERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARS 720
           EERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARS
Sbjct: 661 EERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARS 720

Query: 721 LERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGDLLNKRKALKRSLEVQRLGSLKF 780
           LERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGDLLNKRKALKRSLEVQRLGSLKF
Sbjct: 721 LERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGDLLNKRKALKRSLEVQRLGSLKF 780

Query: 781 FAYQRDKEIAELKLKLVDLKSRRNKNF 808
           FAYQRDKEIAELKLKLVDLKSRRNKNF
Sbjct: 781 FAYQRDKEIAELKLKLVDLKSRRNKNF 807

[Close]

BLAST of Spo00178.1 vs. NCBI nr
Match: gi|731315878|ref|XP_010693304.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 1125.9 bits (2911), Expect = 0.000e+0
Identity = 596/820 (72.68%), Postives = 674/820 (82.20%), Query Frame = 1


		  
Query: 1   MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQSRSF 60
           M A FF+SPSN QLISTPF + FPS      +KP ILK  KPLNSLSSNA+SFFLQ+ SF
Sbjct: 1   MTANFFISPSNFQLISTPFSEKFPSFNLPSTSKPHILKTQKPLNSLSSNATSFFLQNHSF 60

Query: 61  NTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLS 120
           ++KN+D       +I +D N    N  +   N  N+VKMPTAPWMK+PL LP DE+LDLS
Sbjct: 61  SSKNND-------KIEDDENGEYCNEATNSDN--NKVKMPTAPWMKAPLFLPSDEILDLS 120

Query: 121 KPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWV-- 180
           K N+ + K S  ++ K+DRSLTEKISGRKGKKV+ KIV KIERLQ  ++LVDT+KNWV  
Sbjct: 121 KSNETRNKTSNFQSHKSDRSLTEKISGRKGKKVVSKIVQKIERLQLGSDLVDTQKNWVGA 180

Query: 181 ------------DTQKNWDDVGGGFLLGDGGESKLARKLPWEKEEKLVFGRLKREKVVTE 240
                       DTQKNWD+ GGGFL+GDGGES+L RK+PWEK+EKLVF R+KREKVVT 
Sbjct: 181 QKNWVGAQKNWGDTQKNWDEFGGGFLVGDGGESRLGRKMPWEKDEKLVFRRMKREKVVTA 240

Query: 241 AELRLDEELLKRLRREASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRN 300
           AEL LDEELLKRLR+EASKMRKWVKV K G +Q VVDEVHSIWAN+ELVML FDLPLCRN
Sbjct: 241 AELGLDEELLKRLRKEASKMRKWVKVMKAGVTQTVVDEVHSIWANNELVMLKFDLPLCRN 300

Query: 301 MDRAREIVEMKTGGLVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGFTVDE 360
           MDRAREIVE KTGGLVVWSKKD+LVAYRG DY  RR SRK    V P   GQ        
Sbjct: 301 MDRAREIVEFKTGGLVVWSKKDSLVAYRGSDYRLRRCSRK--TYVGPVAGGQRYS----- 360

Query: 361 EKLDVNLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPR 420
                    S+Q Y+      E DS   GLLMD+NLG K TDR LYEREGDRLLDGLGPR
Sbjct: 361 ---------SKQGYERRNMVQENDSRPFGLLMDKNLGTKPTDRPLYEREGDRLLDGLGPR 420

Query: 421 FVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVL 480
           F+DWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVR QL DD+LTYLRK+ARPLPVHFVL
Sbjct: 421 FIDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRSQLTDDDLTYLRKVARPLPVHFVL 480

Query: 481 GRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIV 540
           GRNSKLQGLA AILKLWEKSV AKIAVKWGVPNTNNE M+SELK LTGGVLLLRNKFFIV
Sbjct: 481 GRNSKLQGLAAAILKLWEKSVIAKIAVKWGVPNTNNELMASELKRLTGGVLLLRNKFFIV 540

Query: 541 LYRGKDFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEF 600
           LYRGKDFLP NVA+AV+ER++EL QWQLHEE+ARLKA+ +L+ NDETSAD+S+VGTFSEF
Sbjct: 541 LYRGKDFLPCNVADAVVERDLELQQWQLHEEEARLKAAEILNTNDETSADKSVVGTFSEF 600

Query: 601 QHIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAW 660
           Q+I+TICRN H   +EA VK+EAEKE+LEKEL +QEHKLAILK+KI KAE++L KL+SA 
Sbjct: 601 QNIKTICRNAHINRDEAEVKLEAEKEKLEKELGRQEHKLAILKIKIAKAERELWKLNSAL 660

Query: 661 MSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVIS 720
             SEQEPDQELITEEERECFRKIGLKM+ +L LGRRGVFDGVIEG+HQHWKHRE+VKVIS
Sbjct: 661 NPSEQEPDQELITEEERECFRKIGLKMNRVLELGRRGVFDGVIEGLHQHWKHREVVKVIS 720

Query: 721 MQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGDLLNKRKAL 780
           MQ++FLQVL TA++LERES GILVCIEKLKKGHAIIIYRGKNYKRP+ FG +LL+KRKAL
Sbjct: 721 MQKTFLQVLCTAKTLERESDGILVCIEKLKKGHAIIIYRGKNYKRPVHFGENLLDKRKAL 780

Query: 781 KRSLEVQRLGSLKFFAYQRDKEIAELKLKLVDLKSRRNKN 807
           KRSLE+QRLGSL+FFAYQR+ EIA+LK+KL DL +RR+KN
Sbjct: 781 KRSLEMQRLGSLRFFAYQRNMEIADLKVKLDDLINRRSKN 795

[Close]

BLAST of Spo00178.1 vs. NCBI nr
Match: gi|731417743|ref|XP_010660411.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1 [Vitis vinifera])

HSP 1 Score: 800.8 bits (2067), Expect = 2.200e-228
Identity = 459/815 (56.32%), Postives = 567/815 (69.57%), Query Frame = 1


		  
Query: 1   MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQSRSF 60
           M    FLS S I     P    FPS+  S     + + NP+ ++S      S    + + 
Sbjct: 1   MSPALFLSLSPI-----PNHSQFPSNSNSLSNSSIRILNPQRIHSFKPPPIS---ATTTA 60

Query: 61  NTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLS 120
            T + D +I++                  +S +   +KMPTAPWMK PLLL P+EVLDLS
Sbjct: 61  TTNHPDHSISSQP----------------VSGTDAAIKMPTAPWMKGPLLLQPNEVLDLS 120

Query: 121 KPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWVDT 180
           K    KK    A A K DRSLTEK+SG +G K +KKI+  I +LQ ET+  D      +T
Sbjct: 121 KARP-KKVAGSAGAEKPDRSLTEKVSGGRGAKAMKKIMQSIVKLQ-ETHTSD------ET 180

Query: 181 QKNWDDVGGGFLL-GDGGE--SKLARKLPWEKEEKLVFGRLKREKVVTEAELRLDEELLK 240
           Q+N ++   G  L G GG+  S++  K+PW K EK+VF R K+EKVVT AEL LD  LL+
Sbjct: 181 QENTEEFEFGVSLEGIGGDENSRIGGKMPWLKTEKVVFRRTKKEKVVTAAELTLDPMLLE 240

Query: 241 RLRREASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEMK 300
           RLR EA KMRKWVKVKK G ++ VVD++H +W + EL M+ FD+PLCRNMDRAREI+E+K
Sbjct: 241 RLRGEAVKMRKWVKVKKAGVTESVVDQIHMVWKSDELAMVKFDMPLCRNMDRAREILEIK 300

Query: 301 TGGLVVWSKKDNLVAYRGCDYLSR----RWSRKGRVSVQPADDGQM--PGFTVDEEKLDV 360
           T GLV+WSKKD LV YRG +Y S     +  R G V+   A + ++    F  D    ++
Sbjct: 301 TRGLVIWSKKDTLVVYRGSNYQSTSKHFQKMRPGLVAGADASNSKLNQSNFEDDLTISEI 360

Query: 361 NLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWW 420
               S    K+  KD E+DSS  G+ M+  +  +  + SLYERE DRLLDGLGPRF+DWW
Sbjct: 361 KFHESTTGEKMGRKDGEEDSSPTGIFMEEMVDSQPVNGSLYEREADRLLDGLGPRFIDWW 420

Query: 421 YPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSK 480
            PKPLPVD DLLPEV+PGF+PPFRL PP+ R +L DDELTYLRKLA  LP HFVLGRN K
Sbjct: 421 RPKPLPVDADLLPEVLPGFRPPFRLSPPQTRSKLTDDELTYLRKLAYALPTHFVLGRNRK 480

Query: 481 LQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGK 540
           LQGLA AILKLWEKS+  KIA+KWG+PNT NE M++ELK LTGGVLLLRNKFFI+LYRGK
Sbjct: 481 LQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQMANELKCLTGGVLLLRNKFFIILYRGK 540

Query: 541 DFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQT 600
           DFLP  VAN ++ERE+E    Q+ EEDARLKA       D+  A+ S  GT SEFQ+I+T
Sbjct: 541 DFLPCRVANLIVEREMEFKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIET 600

Query: 601 ICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQ 660
             R +   N E  V++EAEKERLEKEL+KQE  L ILK KI ++ K L KL+SAW  ++ 
Sbjct: 601 EFRGLKDGNTEIEVELEAEKERLEKELKKQERNLFILKRKIERSAKVLAKLNSAWRPADH 660

Query: 661 EPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSF 720
           + D+E+ITEEERECFRKIG KMD+ L+LGRRGVFDGVIEG+HQHWKHRE+VKVI+MQRSF
Sbjct: 661 DADKEMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSF 720

Query: 721 LQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDF-GGDLLNKRKALKRSL 780
            QVLYTA+ LE ESGG+LV I+KLK+GHAIIIYRGKNY+RPI     +LL KR+AL RSL
Sbjct: 721 SQVLYTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSL 780

Query: 781 EVQRLGSLKFFAYQRDKEIAELKLKLVDLK--SRR 804
           E+QR+GSLKFFAYQR + I++LKLKL DL+  SRR
Sbjct: 781 EMQRIGSLKFFAYQRQQAISDLKLKLADLQKGSRR 783

[Close]

BLAST of Spo00178.1 vs. NCBI nr
Match: gi|731417747|ref|XP_010660413.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X2 [Vitis vinifera])

HSP 1 Score: 797.0 bits (2057), Expect = 3.100e-227
Identity = 454/806 (56.33%), Postives = 561/806 (69.60%), Query Frame = 1


		  
Query: 1   MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQSRSF 60
           M    FLS S I     P    FPS+  S     + + NP+ ++S      S    + + 
Sbjct: 1   MSPALFLSLSPI-----PNHSQFPSNSNSLSNSSIRILNPQRIHSFKPPPIS---ATTTA 60

Query: 61  NTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLS 120
            T + D +I++                  +S +   +KMPTAPWMK PLLL P+EVLDLS
Sbjct: 61  TTNHPDHSISSQP----------------VSGTDAAIKMPTAPWMKGPLLLQPNEVLDLS 120

Query: 121 KPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWVDT 180
           K    KK    A A K DRSLTEK+SG +G K +KKI+  I +LQ ET+  D      +T
Sbjct: 121 KARP-KKVAGSAGAEKPDRSLTEKVSGGRGAKAMKKIMQSIVKLQ-ETHTSD------ET 180

Query: 181 QKNWDDVGGGFLL-GDGGE--SKLARKLPWEKEEKLVFGRLKREKVVTEAELRLDEELLK 240
           Q+N ++   G  L G GG+  S++  K+PW K EK+VF R K+EKVVT AEL LD  LL+
Sbjct: 181 QENTEEFEFGVSLEGIGGDENSRIGGKMPWLKTEKVVFRRTKKEKVVTAAELTLDPMLLE 240

Query: 241 RLRREASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEMK 300
           RLR EA KMRKWVKVKK G ++ VVD++H +W + EL M+ FD+PLCRNMDRAREI+E+K
Sbjct: 241 RLRGEAVKMRKWVKVKKAGVTESVVDQIHMVWKSDELAMVKFDMPLCRNMDRAREILEIK 300

Query: 301 TGGLVVWSKKDNLVAYRGCDYLSR----RWSRKGRVSVQPADDGQM--PGFTVDEEKLDV 360
           T GLV+WSKKD LV YRG +Y S     +  R G V+   A + ++    F  D    ++
Sbjct: 301 TRGLVIWSKKDTLVVYRGSNYQSTSKHFQKMRPGLVAGADASNSKLNQSNFEDDLTISEI 360

Query: 361 NLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWW 420
               S    K+  KD E+DSS  G+ M+  +  +  + SLYERE DRLLDGLGPRF+DWW
Sbjct: 361 KFHESTTGEKMGRKDGEEDSSPTGIFMEEMVDSQPVNGSLYEREADRLLDGLGPRFIDWW 420

Query: 421 YPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSK 480
            PKPLPVD DLLPEV+PGF+PPFRL PP+ R +L DDELTYLRKLA  LP HFVLGRN K
Sbjct: 421 RPKPLPVDADLLPEVLPGFRPPFRLSPPQTRSKLTDDELTYLRKLAYALPTHFVLGRNRK 480

Query: 481 LQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGK 540
           LQGLA AILKLWEKS+  KIA+KWG+PNT NE M++ELK LTGGVLLLRNKFFI+LYRGK
Sbjct: 481 LQGLAAAILKLWEKSLIVKIAIKWGIPNTKNEQMANELKCLTGGVLLLRNKFFIILYRGK 540

Query: 541 DFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQT 600
           DFLP  VAN ++ERE+E    Q+ EEDARLKA       D+  A+ S  GT SEFQ+I+T
Sbjct: 541 DFLPCRVANLIVEREMEFKGCQIREEDARLKAIETSFVTDKPLANTSTTGTLSEFQNIET 600

Query: 601 ICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQ 660
             R +   N E  V++EAEKERLEKEL+KQE  L ILK KI ++ K L KL+SAW  ++ 
Sbjct: 601 EFRGLKDGNTEIEVELEAEKERLEKELKKQERNLFILKRKIERSAKVLAKLNSAWRPADH 660

Query: 661 EPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSF 720
           + D+E+ITEEERECFRKIG KMD+ L+LGRRGVFDGVIEG+HQHWKHRE+VKVI+MQRSF
Sbjct: 661 DADKEMITEEERECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSF 720

Query: 721 LQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDF-GGDLLNKRKALKRSL 780
            QVLYTA+ LE ESGG+LV I+KLK+GHAIIIYRGKNY+RPI     +LL KR+AL RSL
Sbjct: 721 SQVLYTAKLLESESGGVLVSIDKLKEGHAIIIYRGKNYRRPIKLVPKNLLTKREALNRSL 774

Query: 781 EVQRLGSLKFFAYQRDKEIAELKLKL 797
           E+QR+GSLKFFAYQR + I++LKLKL
Sbjct: 781 EMQRIGSLKFFAYQRQQAISDLKLKL 774

[Close]

BLAST of Spo00178.1 vs. NCBI nr
Match: gi|720047418|ref|XP_010270810.1| (PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 782.7 bits (2020), Expect = 6.100e-223
Identity = 450/821 (54.81%), Postives = 564/821 (68.70%), Query Frame = 1


		  
Query: 7   LSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQS--RSFNTKN 66
           +S  ++ L  +PF  S  S   + P+      N   LN +SS   +  L    +S    +
Sbjct: 1   MSSLSVALCLSPFPPSNTSHFSNNPSPSSTHPNISALNFVSSYHINPKLNDSFKSLRVLS 60

Query: 67  SDDNINADDEISEDNNTNNNNNGSTISNSSN--------------QVKMPTAPWMKSPLL 126
           S+ +  + D  +  ++ NNN++ S+ S SSN               +KMPTAPWMK P+L
Sbjct: 61  SETHTPSIDSSTSSSSRNNNSSNSSQSPSSNFAFLSEPPSRKDDATIKMPTAPWMKGPIL 120

Query: 127 LPPDEVLDLSKPNQRKKKISIA--EASKADRSLTEKISGRKGKKVIKKIVHKIERLQTET 186
           LP +EVLDLSK   RKK  S +  +    D+ LT+++SG +GK+ ++KI+  I RL+ ET
Sbjct: 121 LPANEVLDLSKTRTRKKSSSKSRDDDGNNDKWLTDRVSGGRGKQAMRKIMQGITRLRQET 180

Query: 187 NLVDTKKNWVDTQK-NWDDVGGGFLLGDGG-----ESKLARKLPWEKEEKLVFGRLKREK 246
           +  +++   V++ K   +++     LG  G     ESK   K+PW K E+LVF R+K+EK
Sbjct: 181 HNCNSE---VESHKFAEEELAFRVPLGPVGSEDEEESKSGGKMPWSKAERLVFPRMKKEK 240

Query: 247 VVTEAELRLDEELLKRLRREASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLP 306
           V T AEL L  E+LKRLR +A+KMRKWVKVKK G +Q VVDE+  IW N+EL M+NFD+P
Sbjct: 241 VATAAELTLPGEVLKRLRSDAAKMRKWVKVKKAGVTQAVVDEIKMIWRNNELAMINFDIP 300

Query: 307 LCRNMDRAREIVEMKTGGLVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGF 366
           LCRNMDRAREIVE+KTGGLVVWSKKD  V YRG +YLS         + Q +  G     
Sbjct: 301 LCRNMDRAREIVEIKTGGLVVWSKKDTHVVYRGSNYLS------SSEASQESHSG----- 360

Query: 367 TVDEEKLDVNLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDG 426
                     + Y+EQ +  ++  +E+           N+G+K  +R+LYERE DRLLDG
Sbjct: 361 ----------VEYAEQGWPFKSISVEE-----------NMGLKSINRTLYEREADRLLDG 420

Query: 427 LGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPV 486
           LGPRF+DWW  KPLPVD DLLPEVVP F+PPFRLCPP VR +L DDELTYLR LAR LP 
Sbjct: 421 LGPRFIDWWRQKPLPVDADLLPEVVPDFRPPFRLCPPNVRSKLTDDELTYLRSLARHLPT 480

Query: 487 HFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNK 546
           HF LGRN KLQGLA AILKLWEK++  KIAVKWG+PNT+NE M+ ELKHLTGGVL+LRNK
Sbjct: 481 HFALGRNKKLQGLAAAILKLWEKNIIVKIAVKWGIPNTDNEQMAWELKHLTGGVLILRNK 540

Query: 547 FFIVLYRGKDFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGT 606
           F I+LYRGKDFLP  VAN ++ERE+EL ++QL EE AR KA       DET    S +GT
Sbjct: 541 FLIILYRGKDFLPCGVANLIVEREMELSRFQLQEEGARFKAIESFHILDETLTSTSAIGT 600

Query: 607 FSEFQHIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKL 666
           FSEFQ IQ  C    + + +  +K  AEKE+LEKELRKQE  L ILK+KI K+ K+L KL
Sbjct: 601 FSEFQDIQKKCIWNDNKSRDIDIKTAAEKEKLEKELRKQERMLFILKMKIKKSAKELAKL 660

Query: 667 DSAWMSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELV 726
           + AW  SE   D+E+ITEEERECFRKIGLKMD  LVLGRRGVFDGVIEG+HQHWKHRE+V
Sbjct: 661 NLAWKHSEHVADREIITEEERECFRKIGLKMDKFLVLGRRGVFDGVIEGLHQHWKHREIV 720

Query: 727 KVISMQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGD-LLN 786
           KVI+MQRSF+QV+ TA+ LE ESGGILV +EKLKKGHAII+YRGKNY+RP+    D  L 
Sbjct: 721 KVITMQRSFIQVMDTAKLLEIESGGILVSVEKLKKGHAIILYRGKNYRRPLKLVPDNFLT 780

Query: 787 KRKALKRSLEVQRLGSLKFFAYQRDKEIAELKLKLVDLKSR 803
           KR+AL+RSLE+QR+GSLKFFAYQR + I  LK KL+DL+ R
Sbjct: 781 KREALQRSLEMQRIGSLKFFAYQRQQMILNLKHKLMDLQRR 786

[Close]

BLAST of Spo00178.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QG47_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_182920 PE=4 SV=1)

HSP 1 Score: 1573.5 bits (4073), Expect = 0.000e+0
Identity = 806/807 (99.88%), Postives = 806/807 (99.88%), Query Frame = 1


		  
Query: 1   MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQSRSF 60
           MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQ RSF
Sbjct: 1   MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQIRSF 60

Query: 61  NTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLS 120
           NTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLS
Sbjct: 61  NTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLS 120

Query: 121 KPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWVDT 180
           KPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWVDT
Sbjct: 121 KPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWVDT 180

Query: 181 QKNWDDVGGGFLLGDGGESKLARKLPWEKEEKLVFGRLKREKVVTEAELRLDEELLKRLR 240
           QKNWDDVGGGFLLGDGGESKLARKLPWEKEEKLVFGRLKREKVVTEAELRLDEELLKRLR
Sbjct: 181 QKNWDDVGGGFLLGDGGESKLARKLPWEKEEKLVFGRLKREKVVTEAELRLDEELLKRLR 240

Query: 241 REASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEMKTGG 300
           REASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEMKTGG
Sbjct: 241 REASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEMKTGG 300

Query: 301 LVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGFTVDEEKLDVNLTYSEQSY 360
           LVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGFTVDEEKLDVNLTYSEQSY
Sbjct: 301 LVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGFTVDEEKLDVNLTYSEQSY 360

Query: 361 KLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDG 420
           KLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDG
Sbjct: 361 KLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDG 420

Query: 421 DLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAIL 480
           DLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAIL
Sbjct: 421 DLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAIL 480

Query: 481 KLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVAN 540
           KLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVAN
Sbjct: 481 KLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVAN 540

Query: 541 AVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHIN 600
           AVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHIN
Sbjct: 541 AVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHIN 600

Query: 601 NEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITE 660
           NEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITE
Sbjct: 601 NEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITE 660

Query: 661 EERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARS 720
           EERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARS
Sbjct: 661 EERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARS 720

Query: 721 LERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGDLLNKRKALKRSLEVQRLGSLKF 780
           LERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGDLLNKRKALKRSLEVQRLGSLKF
Sbjct: 721 LERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGDLLNKRKALKRSLEVQRLGSLKF 780

Query: 781 FAYQRDKEIAELKLKLVDLKSRRNKNF 808
           FAYQRDKEIAELKLKLVDLKSRRNKNF
Sbjct: 781 FAYQRDKEIAELKLKLVDLKSRRNKNF 807

[Close]

BLAST of Spo00178.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CY95_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g027050 PE=4 SV=1)

HSP 1 Score: 1125.9 bits (2911), Expect = 0.000e+0
Identity = 596/820 (72.68%), Postives = 674/820 (82.20%), Query Frame = 1


		  
Query: 1   MKATFFLSPSNIQLISTPFLDSFPSSPFSFPTKPLILKNPKPLNSLSSNASSFFLQSRSF 60
           M A FF+SPSN QLISTPF + FPS      +KP ILK  KPLNSLSSNA+SFFLQ+ SF
Sbjct: 1   MTANFFISPSNFQLISTPFSEKFPSFNLPSTSKPHILKTQKPLNSLSSNATSFFLQNHSF 60

Query: 61  NTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLPPDEVLDLS 120
           ++KN+D       +I +D N    N  +   N  N+VKMPTAPWMK+PL LP DE+LDLS
Sbjct: 61  SSKNND-------KIEDDENGEYCNEATNSDN--NKVKMPTAPWMKAPLFLPSDEILDLS 120

Query: 121 KPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNWV-- 180
           K N+ + K S  ++ K+DRSLTEKISGRKGKKV+ KIV KIERLQ  ++LVDT+KNWV  
Sbjct: 121 KSNETRNKTSNFQSHKSDRSLTEKISGRKGKKVVSKIVQKIERLQLGSDLVDTQKNWVGA 180

Query: 181 ------------DTQKNWDDVGGGFLLGDGGESKLARKLPWEKEEKLVFGRLKREKVVTE 240
                       DTQKNWD+ GGGFL+GDGGES+L RK+PWEK+EKLVF R+KREKVVT 
Sbjct: 181 QKNWVGAQKNWGDTQKNWDEFGGGFLVGDGGESRLGRKMPWEKDEKLVFRRMKREKVVTA 240

Query: 241 AELRLDEELLKRLRREASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRN 300
           AEL LDEELLKRLR+EASKMRKWVKV K G +Q VVDEVHSIWAN+ELVML FDLPLCRN
Sbjct: 241 AELGLDEELLKRLRKEASKMRKWVKVMKAGVTQTVVDEVHSIWANNELVMLKFDLPLCRN 300

Query: 301 MDRAREIVEMKTGGLVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGFTVDE 360
           MDRAREIVE KTGGLVVWSKKD+LVAYRG DY  RR SRK    V P   GQ        
Sbjct: 301 MDRAREIVEFKTGGLVVWSKKDSLVAYRGSDYRLRRCSRK--TYVGPVAGGQRYS----- 360

Query: 361 EKLDVNLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPR 420
                    S+Q Y+      E DS   GLLMD+NLG K TDR LYEREGDRLLDGLGPR
Sbjct: 361 ---------SKQGYERRNMVQENDSRPFGLLMDKNLGTKPTDRPLYEREGDRLLDGLGPR 420

Query: 421 FVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVL 480
           F+DWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVR QL DD+LTYLRK+ARPLPVHFVL
Sbjct: 421 FIDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRSQLTDDDLTYLRKVARPLPVHFVL 480

Query: 481 GRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIV 540
           GRNSKLQGLA AILKLWEKSV AKIAVKWGVPNTNNE M+SELK LTGGVLLLRNKFFIV
Sbjct: 481 GRNSKLQGLAAAILKLWEKSVIAKIAVKWGVPNTNNELMASELKRLTGGVLLLRNKFFIV 540

Query: 541 LYRGKDFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEF 600
           LYRGKDFLP NVA+AV+ER++EL QWQLHEE+ARLKA+ +L+ NDETSAD+S+VGTFSEF
Sbjct: 541 LYRGKDFLPCNVADAVVERDLELQQWQLHEEEARLKAAEILNTNDETSADKSVVGTFSEF 600

Query: 601 QHIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAW 660
           Q+I+TICRN H   +EA VK+EAEKE+LEKEL +QEHKLAILK+KI KAE++L KL+SA 
Sbjct: 601 QNIKTICRNAHINRDEAEVKLEAEKEKLEKELGRQEHKLAILKIKIAKAERELWKLNSAL 660

Query: 661 MSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVIS 720
             SEQEPDQELITEEERECFRKIGLKM+ +L LGRRGVFDGVIEG+HQHWKHRE+VKVIS
Sbjct: 661 NPSEQEPDQELITEEERECFRKIGLKMNRVLELGRRGVFDGVIEGLHQHWKHREVVKVIS 720

Query: 721 MQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGDLLNKRKAL 780
           MQ++FLQVL TA++LERES GILVCIEKLKKGHAIIIYRGKNYKRP+ FG +LL+KRKAL
Sbjct: 721 MQKTFLQVLCTAKTLERESDGILVCIEKLKKGHAIIIYRGKNYKRPVHFGENLLDKRKAL 780

Query: 781 KRSLEVQRLGSLKFFAYQRDKEIAELKLKLVDLKSRRNKN 807
           KRSLE+QRLGSL+FFAYQR+ EIA+LK+KL DL +RR+KN
Sbjct: 781 KRSLEMQRLGSLRFFAYQRNMEIADLKVKLDDLINRRSKN 795

[Close]

BLAST of Spo00178.1 vs. UniProtKB/TrEMBL
Match: M5WXK2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016241mg PE=4 SV=1)

HSP 1 Score: 735.7 bits (1898), Expect = 6.000e-209
Identity = 431/834 (51.68%), Postives = 551/834 (66.07%), Query Frame = 1


		  
Query: 1   MKATFFLSPSNIQLISTPFLDSFPSSPF--------SFPTKPLILKNPKPLNSLSSNASS 60
           M AT FL+P +     T  L S  + PF        +  +KP   +NPKP N + S + +
Sbjct: 1   MPATLFLTPLSTLPNITHHLPSHSNPPFHSYNPISSALNSKPP--QNPKPTNPIPSKSPN 60

Query: 61  FFLQSRSFNTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPWMKSPLLLP 120
               S +  T NS          SE N           S++   +K PTAPWMK PLLL 
Sbjct: 61  SLSLSSTTTTPNSKAP-------SEPN-----------SSTDACIKAPTAPWMKGPLLLQ 120

Query: 121 PDEVLDLSKPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVD 180
           P EV+D SKP + KK  + A+A K D  L  K+ G +G K IK+IV  IERL       +
Sbjct: 121 PHEVIDFSKP-RNKKTHNNAKAEKPDTVLAGKLVGIRGDKAIKQIVQSIERLGPNQKTDE 180

Query: 181 TKKN------------------WVDTQKNWDDVG-GGFL--LGDGGESKLARKLPWEKEE 240
           T+K                   W +T K++ + G GG L  LG   +S+   K+PWE++E
Sbjct: 181 TQKGFGEFRIWDSLEGLGQNEKWDETHKDFVEFGIGGCLEGLGKAADSRFGGKMPWERDE 240

Query: 241 KLVFGRLKREKVVTEAELRLDEELLKRLRREASKMRKWVKVKKIGFSQDVVDEVHSIWAN 300
           ++VF R+K+++V + AEL L++ELL+RLR EA+KMRKWVKVKK G +Q +VD++  IW  
Sbjct: 241 RIVFQRIKKKRVASAAELSLEKELLERLRAEAAKMRKWVKVKKAGVTQAIVDDIKFIWKT 300

Query: 301 SELVMLNFDLPLCRNMDRAREIVEMKTGGLVVWSKKDNLVAYRGCDYLSRRWSRKGRVSV 360
           +EL M+ FD+PLCRNM RA+EIVE KTGG+VVW KKD LV YRGC+Y S   S K    +
Sbjct: 301 NELAMVKFDVPLCRNMHRAQEIVETKTGGMVVWGKKDTLVIYRGCNYQS---SSKFFPKM 360

Query: 361 QPADDGQMPGFTVD--EEKLDVNLTYSEQSY------KLETKDIEKDSSSDGLLMDRNLG 420
           +P    +    + D  +  L+ N +Y  +S+      K+  KD E+D    G   + ++ 
Sbjct: 361 RPCSADRQETLSSDHMQPDLEENSSYQYKSFESPVDEKMSRKDAEEDCIQSGTFQETSMS 420

Query: 421 IKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRP 480
            + T RSLYE+E DRLLDGLGPRF+DWW  KPLPVD DLLPEVVPGFK P R CPP  R 
Sbjct: 421 CQPTSRSLYEKEADRLLDGLGPRFIDWWMHKPLPVDADLLPEVVPGFKAPIRRCPPHTRS 480

Query: 481 QLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNE 540
           +L DDELT+LRK AR LP HFVLGRN KLQGLA AILKLWEKS+ AKIAVK+GVPNTNNE
Sbjct: 481 KLTDDELTFLRKFARSLPTHFVLGRNRKLQGLAAAILKLWEKSLIAKIAVKFGVPNTNNE 540

Query: 541 FMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVANAVIEREIELHQWQLHEEDARLKA 600
            M+ EL+     VL+LRNKF I+LYRGKDFLP  VA+ V +RE+EL +WQL+EE AR KA
Sbjct: 541 QMAYELR---ARVLILRNKFIILLYRGKDFLPCGVADLVAKREVELTRWQLYEEHARQKA 600

Query: 601 SGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEH 660
             +  F +      + VGT SEFQ IQT    +   N    +K+EAEKE+LE+ELR QE 
Sbjct: 601 --IETFCESGEPLVNTVGTLSEFQDIQTEYGELIKENKNVEIKLEAEKEQLERELRNQER 660

Query: 661 KLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRG 720
           K  IL  KI K+  +L KL+S    +EQ+ DQE++TEEE+EC R +GLKM + LVLGRRG
Sbjct: 661 KFFILNKKIEKSTNELSKLNSQRTPAEQDVDQEMMTEEEKECLRTVGLKMHSCLVLGRRG 720

Query: 721 VFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIII 780
           VF+GV+EG+HQHWKHRE+VKVI+MQ+ F QV++TA+ LE ESGGILV ++KLK+GHAIII
Sbjct: 721 VFNGVMEGLHQHWKHREVVKVITMQKLFRQVMHTAKLLEAESGGILVSVDKLKEGHAIII 780

Query: 781 YRGKNYKRPI-DFGGDLLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAELKLKL 797
           YRGKNY+RP+   GG+LL+KRKAL RSLE+QR+GSLKFFA QR +   +LKLKL
Sbjct: 781 YRGKNYRRPLMPTGGNLLSKRKALHRSLEMQRIGSLKFFASQRQQATLDLKLKL 805

[Close]

BLAST of Spo00178.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PGE0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03195 PE=4 SV=1)

HSP 1 Score: 733.0 bits (1891), Expect = 3.900e-208
Identity = 419/752 (55.72%), Postives = 535/752 (71.14%), Query Frame = 1


		  
Query: 60  FNTKNSDDNINADDEISEDNNTNNNNNGSTISNS--SNQVKMPTAPWMKSPLLLPPDEVL 119
           F++ NS  N     +  + N++ N N+  ++S +  +  +KMPT PWMK PLLL PDEVL
Sbjct: 13  FSSFNSTQN---PSKTQKGNHSFNKNSKFSVSKTHRNGPIKMPTPPWMKGPLLLQPDEVL 72

Query: 120 DLSKPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERLQTETNLVDTKKNW 179
           + SKP  ++   + ++A   +++L  K SG +GKKV+KKI+  +E+LQ    L DT+   
Sbjct: 73  NASKPTTKRSSNNNSKAP--EKALFGKESGVRGKKVMKKIIRDVEKLQGNGALDDTQIGK 132

Query: 180 VDTQK--NW-DDVGGGFLLGDGGESKLARKLPW-EKEEKLVFGRLKREKVVTEAELRLDE 239
            +  +  NW +++G      DG   K  RK+PW  +EEK+VF R+K+EKV+T+AE+ LD 
Sbjct: 133 FEEFEIGNWLEEIGS-----DGEVKKFDRKMPWVREEEKVVFRRMKKEKVLTQAEIILDN 192

Query: 240 ELLKRLRREASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREI 299
           +LL+RLR++A++MRKWVKV K G +QDVVDE+   W N+ELVML F +PLCRNMDRA EI
Sbjct: 193 DLLERLRKKATRMRKWVKVMKAGVTQDVVDEIRLAWGNNELVMLKFGVPLCRNMDRASEI 252

Query: 300 VEMKTGGLVVWSKKDNLVAYRGCDYLSRRW--SRKGRVSVQPADDGQMPGFTVDEEKLDV 359
           VEMKTGGLVVW KKD LV YRG ++    W  S   RV    A D      T+  EK + 
Sbjct: 253 VEMKTGGLVVWCKKDILVVYRGQNH----WLTSNGQRVFNNLASDNNT---TMSPEKSNA 312

Query: 360 NLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWW 419
           +      +++      ++D ++  ++            SLYERE DRLLDGLGPRF+DWW
Sbjct: 313 S------TWRRSLNGEDRDENNQPVV-----------GSLYERETDRLLDGLGPRFIDWW 372

Query: 420 YPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSK 479
             KPLPVD DLLPEVVPGFKPP RL PP+ RP+L D+ELT LRKLA PLP HFVLGRN  
Sbjct: 373 MRKPLPVDADLLPEVVPGFKPPTRLSPPKTRPKLTDEELTNLRKLAHPLPFHFVLGRNRN 432

Query: 480 LQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGK 539
           LQGLA +ILKLWEKS+ AKIA+KWGV NT+NE M++ELK LTGGVLLLRNKF I+ YRGK
Sbjct: 433 LQGLANSILKLWEKSLIAKIAIKWGVQNTDNEQMANELKDLTGGVLLLRNKFLIIFYRGK 492

Query: 540 DFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQT 599
           DFLP  VAN+V+ERE+ L + QL EE AR+K +      +E+ A  S VGT +EFQ IQT
Sbjct: 493 DFLPQGVANSVMEREMALRRCQLIEEGARVKVAETFQVANESLAKTSTVGTLAEFQDIQT 552

Query: 600 ICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQ 659
               +   NNE  ++IEA+KE LE+ELR QE KLAIL  KI K+ K L KL+S+W ++E 
Sbjct: 553 KYGVLEKENNELEIQIEAQKENLERELRNQERKLAILNGKIEKSAKKLAKLNSSWQTAEP 612

Query: 660 EPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSF 719
           + D E ITEEEREC RKIGLK+ + LVLGRRGVF+GVIEGVHQHWKHRE+VKVI+MQR+F
Sbjct: 613 DLDLETITEEERECLRKIGLKLSSCLVLGRRGVFNGVIEGVHQHWKHREVVKVITMQRAF 672

Query: 720 LQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGGD-LLNKRKALKRSL 779
           L+V+YTA+ L  ESGGILV +EKLK+GHAIIIYRGKNY+RP     D LL KR+AL+RS+
Sbjct: 673 LRVIYTAKMLVAESGGILVSVEKLKEGHAIIIYRGKNYRRPSKLMTDHLLTKREALQRSI 730

Query: 780 EVQRLGSLKFFAYQRDKEIAELKLKLVDLKSR 803
           E+QR+GSLKFFAYQR + I +LKLKL  L+ +
Sbjct: 733 ELQRIGSLKFFAYQRRQAILDLKLKLAKLEEQ 730

[Close]

BLAST of Spo00178.1 vs. UniProtKB/TrEMBL
Match: A0A103YGV6_CYNCS (RNA-binding, CRM domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_012761 PE=4 SV=1)

HSP 1 Score: 730.7 bits (1885), Expect = 1.900e-207
Identity = 412/765 (53.86%), Postives = 516/765 (67.45%), Query Frame = 1


		  
Query: 45  SLSSNASSFFLQSRSFNTKNSDDNINADDEISEDNNTNNNNNGSTISNSSNQVKMPTAPW 104
           ++ SNA +   +  S N +    +++       D     N N S   NS+ +    TAPW
Sbjct: 40  TMLSNALNLPKKIHSSNPQIHHSSLSVPTPEIHDKKHEFNPNPS---NSATK----TAPW 99

Query: 105 MKSPLLLPPDEVLDLSKPNQRKKKISIAEASKADRSLTEKISGRKGKKVIKKIVHKIERL 164
           MK PL+L P++V+D SKP  R K    +  +K ++SLT K+SG +GK  +KKI++ I+ L
Sbjct: 100 MKGPLVLEPNQVVDFSKPKHRNK----SSDNKDEKSLTHKVSGGRGKHAMKKILYSIDNL 159

Query: 165 QTETNLVDTKKNWVDTQKNWDDVGGGFLLG------DGGESK-LARKLPWEKEEKLVFGR 224
           + E+  +       DTQ N   +     LG      DGG+ +   RKLPWE+EE++VF R
Sbjct: 160 EQESQELR------DTQNNLQQIEFDLSLGKLDEDSDGGDKRWFRRKLPWEREERMVFRR 219

Query: 225 LKREKVVTEAELRLDEELLKRLRREASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVML 284
           +K+EKV T AEL LD  LL+RLR EA KMR WVKVKK+G ++ VV+++  IW   EL ML
Sbjct: 220 MKKEKVTTAAELSLDVRLLERLRGEARKMRNWVKVKKVGVNEGVVEQIRLIWNTDELAML 279

Query: 285 NFDLPLCRNMDRAREIVEMKTGGLVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDG 344
            FD+PLCRNMDRAREIVE+KTGG VVWSKKD L  YRGC++     S  G   +      
Sbjct: 280 KFDMPLCRNMDRAREIVEIKTGGFVVWSKKDTLAIYRGCNHKEMHTSFDGGQELNSCKTS 339

Query: 345 QMPGFTVDEEKLDVNLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGD 404
            + G     +K  ++ TY            +  + +DG          +   SLYERE D
Sbjct: 340 YLGGVPFLRDKFGMDSTY------------QMVAGNDG-----KEETMVVQGSLYEREAD 399

Query: 405 RLLDGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLA 464
           RLLDGLGPRFVDWW PKPLP+D D+LPE+VPG+KPP R CP   R +L DDELT+LR+LA
Sbjct: 400 RLLDGLGPRFVDWWMPKPLPIDADMLPELVPGYKPPSRRCPMNARSKLTDDELTHLRRLA 459

Query: 465 RPLPVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVL 524
            PLP HFVLGRN  LQGLA AILKLWEK   AKIAVKWG+PNT NE M+SELK LTGGVL
Sbjct: 460 YPLPTHFVLGRNRNLQGLAAAILKLWEKCHIAKIAVKWGIPNTRNEQMASELKVLTGGVL 519

Query: 525 LLRNKFFIVLYRGKDFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDFNDETSADR 584
           LLRNKF+I+LYRGKDFLP  VA+ V +REI L  +QL EE AR        + DE  +D 
Sbjct: 520 LLRNKFYIILYRGKDFLPPGVADLVADREIALKSFQLQEEAARTHTIETFHYIDEPLSDS 579

Query: 585 SIVGTFSEFQHIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEK 644
           S VGT  EFQ IQ+  +      +EA V++E EK +LEKE+R QE K  ILK+KI K  K
Sbjct: 580 STVGTLQEFQSIQSKHQGFKPRTSEAEVQVETEKLKLEKEIRNQERKYFILKMKIDKVSK 639

Query: 645 DLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWK 704
           +L KL+S+W   E   D+E+IT EEREC RK+GLKMD+ LVLGRRGVFDGVIEG+HQHWK
Sbjct: 640 ELEKLNSSWEPIEPNEDREIITSEERECLRKMGLKMDSTLVLGRRGVFDGVIEGLHQHWK 699

Query: 705 HRELVKVISMQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDFGG 764
           HRE+VKVI+MQR+F ++LYTA+SLE ESGGILV IEKLK G+AII+YRGKNYKRP+ F  
Sbjct: 700 HREIVKVITMQRAFSRILYTAQSLEAESGGILVSIEKLKLGYAIIMYRGKNYKRPLKFSR 759

Query: 765 DLLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAELKLKLVDLKSR 803
           +LL+KR+AL++SLE+QR+GSLKFFA  R + I ELK KL  LK R
Sbjct: 760 NLLSKREALRKSLEMQRIGSLKFFANMRQQAIYELKCKLDVLKHR 770

[Close]

BLAST of Spo00178.1 vs. ExPASy Swiss-Prot
Match: CRS1_ORYSJ (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 7.100e-155
Identity = 308/602 (51.16%), Postives = 396/602 (65.78%), Query Frame = 1


		  
Query: 201 LARKLPW----EKEEKLVFGRLKREKVVTEAELRLDEELLKRLRREASKMRKWVKVKKIG 260
           + R +PW    ++E K+V  R K+ +V T AE  L+   L+RLRR A    +W + KK G
Sbjct: 121 IRRAVPWAAARDEETKVVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAG 180

Query: 261 FSQDVVDEVHSIWANS-ELVMLNFDLPLCRNMDRAREIVEMKTGGLVVWSKKDNLVAYRG 320
            + +VV+EV   WA   EL  +    PL R MDRAREI+E+KTGGLVVW++      YRG
Sbjct: 181 ITDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRG 240

Query: 321 CDYLSRRWSRKGRVSVQPADDGQMPGFTVDEEKLDVNLTYSEQSYKLETKDIEKDSSSDG 380
             YL      +  V+              +EE   V         K  +KD    + +D 
Sbjct: 241 SSYLENAKRHRDFVNY-------------NEELSPVTSNNPTSQGKYWSKDETLTNDNDE 300

Query: 381 LLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFR 440
                +  IK T   LYERE +RLLD LGPRF+DWW+  PLPVD DLLPEVVP FK PFR
Sbjct: 301 ADDKDDKPIKGT---LYEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFR 360

Query: 441 LCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKW 500
            CPP VRP L D+ELTYLRK ARPLP HFVLGRN+KLQGLA AILKLWEKS+ AK+AVK 
Sbjct: 361 QCPPGVRPALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKV 420

Query: 501 GVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVANAVIEREIELHQWQLH 560
           G+ NTN+E M+  LK LTGG ++LRNK +I++YRGKDFLPG VA +VIERE ++H  Q  
Sbjct: 421 GIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDFLPGGVAESVIERESQVHDQQAK 480

Query: 561 EEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHINNEAAVKIEAEKERLE 620
           EE+ARLK +  L      S++RS VGTF E+Q             N   +++EA+K RLE
Sbjct: 481 EEEARLKMADSLQMIVGLSSERSYVGTFREYQDFHD-SHARRTTENNFRIQLEAKKHRLE 540

Query: 621 KELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKMDN 680
           KEL+ QE +L++L  KI ++ + L KL S+W  S+++ D+EL+TEEER  FRKIGLKMD 
Sbjct: 541 KELKDQEWRLSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDE 600

Query: 681 ILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARSLERESGGILVCIEKL 740
            ++LGRRGVF+GVIE +HQHWKH+E+VKVI+ Q    Q+ YT+  LE E+GG L+ IE+ 
Sbjct: 601 HVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERF 660

Query: 741 KKGHAIIIYRGKNYKRPIDFG-GDLLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAELKL 797
              HAII+YRGKNY+RP      +LL KR+AL+RS+EVQR GS+K+FA +R K I ELK 
Sbjct: 661 TTSHAIILYRGKNYRRPTKSAPSNLLTKREALQRSIEVQRRGSMKYFAQERKKSIDELKR 705

[Close]

BLAST of Spo00178.1 vs. ExPASy Swiss-Prot
Match: CRS1_MAIZE (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 1.500e-133
Identity = 247/410 (60.24%), Postives = 307/410 (74.88%), Query Frame = 1


		  
Query: 390 SLYEREGDRLLDGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDE 449
           +LYERE +RLLD LGPRFVDWW+  PLPVD DLLPE VPG K P+RLCPP VRP L D+E
Sbjct: 297 TLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLADEE 356

Query: 450 LTYLRKLARPLPVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSEL 509
           LTYLRKLAR LP HF LGRN++LQGLA AILKLWEKS+ AKIAVK G+ NTNNE M+  L
Sbjct: 357 LTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMAWNL 416

Query: 510 KHLTGGVLLLRNKFFIVLYRGKDFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDF 569
           KHLTGG ++LRNK FI+LYRGKDFLPG VA  VI+RE ++H  Q+ EE+ARLKA   L  
Sbjct: 417 KHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKAVDSLQM 476

Query: 570 NDETSADRSIVGTFSEFQ--HIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAI 629
             E S + S+ GTF E+Q  H + +  N    N+   +++EAEK RLEKEL+  E KL++
Sbjct: 477 VGELSEESSL-GTFREYQGFHAKFVHENTE--NSNTMIELEAEKYRLEKELKDHEWKLSV 536

Query: 630 LKLKIVKAEKDLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDG 689
           L  KI ++ + L KL S+W  SEQ  D+E +TEEE+  FR+IG KMD +++LGRRG+FDG
Sbjct: 537 LNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDG 596

Query: 690 VIEGVHQHWKHRELVKVISMQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGK 749
           VIE +HQHWKH+E+VKVI+ Q    Q++Y A  LE E+GGIL+ +EKL   HAII+YRGK
Sbjct: 597 VIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRGK 656

Query: 750 NYKRPIDFG-GDLLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAELKLKL 797
           NY+RP      +LL KR+AL+RS+EVQR GS+K+F  +R K I ELK KL
Sbjct: 657 NYRRPAKSSFSNLLTKREALRRSIEVQRRGSMKYFVRERQKSILELKRKL 703

[Close]

BLAST of Spo00178.1 vs. ExPASy Swiss-Prot
Match: CRS1_ARATH (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=2)

HSP 1 Score: 473.8 bits (1218), Expect = 3.800e-132
Identity = 249/415 (60.00%), Postives = 310/415 (74.70%), Query Frame = 1


		  
Query: 390 SLYEREGDRLLDGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDE 449
           SLYERE DRLLDGLGPR++DWW  +P PVD DLLPEVV G+  P R CPP  R +L D+E
Sbjct: 306 SLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEE 365

Query: 450 LTYLRKLARPLPVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSEL 509
           LTYLR +A+PLP HFVLGRN  LQGLA AI+KLWEK + AKIA+KWG  NTNNE M+ EL
Sbjct: 366 LTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADEL 425

Query: 510 KHLTGGVLLLRNKFFIVLYRGKDFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDF 569
           ++LTGGVL+LRNK+ IVLYRGKDFL   VA+ V +RE  L ++Q  EE  R     +L+ 
Sbjct: 426 RYLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEV 485

Query: 570 --NDETSADRSIVGTFSEFQHIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAI 629
             N +   + +  GT  EFQ +Q     +   N E     EAEK RLEKEL+ QEHKL+I
Sbjct: 486 VTNGKQLKETNKSGTLLEFQELQRKFGEMDPRNLET----EAEKARLEKELKSQEHKLSI 545

Query: 630 LKLKIVKAEKDLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDG 689
           LK KI K+  +L KL+S W  SE + D E++T EEREC R+IGLKM++ LVLGRRGVF G
Sbjct: 546 LKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFG 605

Query: 690 VIEGVHQHWKHRELVKVISMQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGK 749
           V+EG+HQHWKHRE+ KVI+MQ+ F +V+YTA++LE ES G+L+ IEKLK+GHAI+IYRGK
Sbjct: 606 VMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGK 665

Query: 750 NYKRPID--FGGDLLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAELKLKLVDLK 801
           NYKRP       +LL KRKAL+RS+ +QRLGSLKFFAYQR++ I +LK+ LV+L+
Sbjct: 666 NYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLKVSLVNLQ 716

[Close]

BLAST of Spo00178.1 vs. ExPASy Swiss-Prot
Match: CFM3A_ARATH (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CFM3A PE=2 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.300e-111
Identity = 263/620 (42.42%), Postives = 362/620 (58.39%), Query Frame = 1


		  
Query: 187 VGGGFLLGDGGESKLARKLPWEK----EEKLVFGR--LKREKVVTEAELRLDEELLKRLR 246
           +GG  ++G  G+       PWEK    E+K +      K+E   + AE+ L E  L+RLR
Sbjct: 175 LGGENVIGSNGDVGF----PWEKMSAKEKKELEAEWTAKKENRYSLAEMTLPESELRRLR 234

Query: 247 ----REASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEM 306
               R ASKMR    ++  G +Q  VD +   W ++E+V L  +     NM +  EI+E 
Sbjct: 235 NLTFRTASKMR----IRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEK 294

Query: 307 KTGGLVVWSKKDNLVAYRGCDYL--SRRWSRKGRVSVQPA---DDGQMPGFTVDEEKLDV 366
           KTGGLV+W    ++  YRG  Y   S +W+++ R    P    ++       VD+    V
Sbjct: 295 KTGGLVIWRSGTSISLYRGVSYELPSGKWNKQRREETPPEAVIENHDETTTMVDKSDEKV 354

Query: 367 NLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWW 426
           +L   EQ    ET  +EK   +  ++              YE E D LLD LGPRF+DW 
Sbjct: 355 HLPQLEQ----ETTSVEKKDQTSPVVE-------------YEDELDELLDDLGPRFMDWP 414

Query: 427 YPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSK 486
              PLPVD DLLP  +P ++PPFR+ P  VR  L   E T LR+LAR +P HF LGR+ +
Sbjct: 415 GDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQ 474

Query: 487 LQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGK 546
           LQGLA A+++LWEKS+ AKIA+K GV +T +E M+ +LK LTGG++L RNK F+V YRGK
Sbjct: 475 LQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGK 534

Query: 547 DFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSI-VGTFSE-FQHI 606
           +FL   VA+A++E+E  +   Q  EE ARL+ S  L       A++ +  GT  E     
Sbjct: 535 NFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGETLDAT 594

Query: 607 QTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSS 666
               +N+   ++   VK E E  R E  +RK E KLA  + K++KAE+ L K++     +
Sbjct: 595 GKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPA 654

Query: 667 EQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQR 726
           EQ  D E IT+EER  FRK+GLKM   L+LGRRGVFDG +E +H HWK+RELVK+I   +
Sbjct: 655 EQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAK 714

Query: 727 SFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDF-GGDLLNKRKALKR 786
           +F  V   A +LE ESGGILV I+K+ KG+AII+YRG++YKRP      +LL KRKAL R
Sbjct: 715 TFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALAR 769

Query: 787 SLEVQRL-GSLKFFAYQRDK 788
           S+E+QR  G LK  +  + K
Sbjct: 775 SIELQRREGLLKHISTMQAK 769

[Close]

BLAST of Spo00178.1 vs. ExPASy Swiss-Prot
Match: CFM2_ARATH (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2 PE=1 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.100e-110
Identity = 255/606 (42.08%), Postives = 343/606 (56.60%), Query Frame = 1


		  
Query: 204 KLPWEKEEKLVFGRLKREKVVTEAELRLDEELLKRLRREASKMRKWVKVKKIGFSQDVVD 263
           K  W+KE ++   R K EKV + AEL L    L+RLR    ++ K +K+ K G ++ +V+
Sbjct: 141 KRVWKKETEME--RKKEEKVPSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVN 200

Query: 264 EVHSIWANSELVMLNFDLPLCRNMDRAREIVEMKTGGLVVWSKKDNLVAYRGCDYLSRRW 323
            +H  W  +E+V +  +     NM R  +++E KTGGLV+W     ++ YRG +Y    +
Sbjct: 201 GIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYF 260

Query: 324 SRKGRVSVQPADDGQM--PGFTVDEEKLDVNLTYSEQSYKLETKDIEKDSSSDGLLMDRN 383
                ++ + A        G     EK  +    +E S    T  + K   + G+     
Sbjct: 261 VSDRDLAHEAASGASSMDQGVVDSREKQSI----AESSAPSITNKMVKPMLTQGVGSPDK 320

Query: 384 LGIKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRV 443
           +  +L        E DRLL+GLGPRF DWW   PLPVDGDLLP VVP ++ PFRL P  V
Sbjct: 321 VRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGV 380

Query: 444 RPQLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTN 503
            P+L DDE+T +R+L RPLP HF LGRN  LQGLAVAI+KLWEK   AKIAVK GV NTN
Sbjct: 381 SPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTN 440

Query: 504 NEFMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVANAVIEREIE--------LHQWQ 563
           +E M+ ELK LTGG L+ R+K FIVLYRGKDFLP  V++A+ ER  +        +H  +
Sbjct: 441 SELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNK 500

Query: 564 LHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHINNEAAVKIEAEKER 623
           L E +  +K   V +  +  + D+          HIQT     H + +        ++  
Sbjct: 501 LTENEEEIKPRAVKEDIELEAKDQK--------DHIQT-----HQMKSR-------QRNS 560

Query: 624 LEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKM 683
            E  L K   KL++   K   AEK L  L++       + D+E IT +E+   RKIGLKM
Sbjct: 561 PEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKM 620

Query: 684 DNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARSLERESGGILVCIE 743
              L+LGRRGVFDG IE +H HWK+RELVK+I  + S       A  LE ESGGILV +E
Sbjct: 621 KPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVE 680

Query: 744 KLKKGHAIIIYRGKNYKRPIDFGGD-LLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAEL 799
            + KG+AII+YRGKNY+RP       LL+KR+ALKRS+E QR  SLK    +    I EL
Sbjct: 681 MVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEEL 720

[Close]

BLAST of Spo00178.1 vs. TAIR (Arabidopsis)
Match: AT5G16180.1 (ortholog of maize chloroplast splicing factor CRS1)

HSP 1 Score: 473.8 bits (1218), Expect = 2.100e-133
Identity = 249/415 (60.00%), Postives = 310/415 (74.70%), Query Frame = 1


		  
Query: 390 SLYEREGDRLLDGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDE 449
           SLYERE DRLLDGLGPR++DWW  +P PVD DLLPEVV G+  P R CPP  R +L D+E
Sbjct: 306 SLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEE 365

Query: 450 LTYLRKLARPLPVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSEL 509
           LTYLR +A+PLP HFVLGRN  LQGLA AI+KLWEK + AKIA+KWG  NTNNE M+ EL
Sbjct: 366 LTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADEL 425

Query: 510 KHLTGGVLLLRNKFFIVLYRGKDFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDF 569
           ++LTGGVL+LRNK+ IVLYRGKDFL   VA+ V +RE  L ++Q  EE  R     +L+ 
Sbjct: 426 RYLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEV 485

Query: 570 --NDETSADRSIVGTFSEFQHIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAI 629
             N +   + +  GT  EFQ +Q     +   N E     EAEK RLEKEL+ QEHKL+I
Sbjct: 486 VTNGKQLKETNKSGTLLEFQELQRKFGEMDPRNLET----EAEKARLEKELKSQEHKLSI 545

Query: 630 LKLKIVKAEKDLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDG 689
           LK KI K+  +L KL+S W  SE + D E++T EEREC R+IGLKM++ LVLGRRGVF G
Sbjct: 546 LKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFG 605

Query: 690 VIEGVHQHWKHRELVKVISMQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGK 749
           V+EG+HQHWKHRE+ KVI+MQ+ F +V+YTA++LE ES G+L+ IEKLK+GHAI+IYRGK
Sbjct: 606 VMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGK 665

Query: 750 NYKRPID--FGGDLLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAELKLKLVDLK 801
           NYKRP       +LL KRKAL+RS+ +QRLGSLKFFAYQR++ I +LK+ LV+L+
Sbjct: 666 NYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLKVSLVNLQ 716

[Close]

BLAST of Spo00178.1 vs. TAIR (Arabidopsis)
Match: AT3G23070.1 (CRM family member 3A)

HSP 1 Score: 403.3 bits (1035), Expect = 3.500e-112
Identity = 263/620 (42.42%), Postives = 362/620 (58.39%), Query Frame = 1


		  
Query: 187 VGGGFLLGDGGESKLARKLPWEK----EEKLVFGR--LKREKVVTEAELRLDEELLKRLR 246
           +GG  ++G  G+       PWEK    E+K +      K+E   + AE+ L E  L+RLR
Sbjct: 175 LGGENVIGSNGDVGF----PWEKMSAKEKKELEAEWTAKKENRYSLAEMTLPESELRRLR 234

Query: 247 ----REASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLPLCRNMDRAREIVEM 306
               R ASKMR    ++  G +Q  VD +   W ++E+V L  +     NM +  EI+E 
Sbjct: 235 NLTFRTASKMR----IRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEK 294

Query: 307 KTGGLVVWSKKDNLVAYRGCDYL--SRRWSRKGRVSVQPA---DDGQMPGFTVDEEKLDV 366
           KTGGLV+W    ++  YRG  Y   S +W+++ R    P    ++       VD+    V
Sbjct: 295 KTGGLVIWRSGTSISLYRGVSYELPSGKWNKQRREETPPEAVIENHDETTTMVDKSDEKV 354

Query: 367 NLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGDRLLDGLGPRFVDWW 426
           +L   EQ    ET  +EK   +  ++              YE E D LLD LGPRF+DW 
Sbjct: 355 HLPQLEQ----ETTSVEKKDQTSPVVE-------------YEDELDELLDDLGPRFMDWP 414

Query: 427 YPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPLPVHFVLGRNSK 486
              PLPVD DLLP  +P ++PPFR+ P  VR  L   E T LR+LAR +P HF LGR+ +
Sbjct: 415 GDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFALGRSRQ 474

Query: 487 LQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLRNKFFIVLYRGK 546
           LQGLA A+++LWEKS+ AKIA+K GV +T +E M+ +LK LTGG++L RNK F+V YRGK
Sbjct: 475 LQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFLVFYRGK 534

Query: 547 DFLPGNVANAVIEREIELHQWQLHEEDARLKASGVLDFNDETSADRSI-VGTFSE-FQHI 606
           +FL   VA+A++E+E  +   Q  EE ARL+ S  L       A++ +  GT  E     
Sbjct: 535 NFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLGETLDAT 594

Query: 607 QTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSS 666
               +N+   ++   VK E E  R E  +RK E KLA  + K++KAE+ L K++     +
Sbjct: 595 GKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPA 654

Query: 667 EQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQR 726
           EQ  D E IT+EER  FRK+GLKM   L+LGRRGVFDG +E +H HWK+RELVK+I   +
Sbjct: 655 EQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAK 714

Query: 727 SFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDF-GGDLLNKRKALKR 786
           +F  V   A +LE ESGGILV I+K+ KG+AII+YRG++YKRP      +LL KRKAL R
Sbjct: 715 TFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALAR 769

Query: 787 SLEVQRL-GSLKFFAYQRDK 788
           S+E+QR  G LK  +  + K
Sbjct: 775 SIELQRREGLLKHISTMQAK 769

[Close]

BLAST of Spo00178.1 vs. TAIR (Arabidopsis)
Match: AT3G01370.1 (CRM family member 2)

HSP 1 Score: 402.5 bits (1033), Expect = 6.100e-112
Identity = 255/606 (42.08%), Postives = 343/606 (56.60%), Query Frame = 1


		  
Query: 204 KLPWEKEEKLVFGRLKREKVVTEAELRLDEELLKRLRREASKMRKWVKVKKIGFSQDVVD 263
           K  W+KE ++   R K EKV + AEL L    L+RLR    ++ K +K+ K G ++ +V+
Sbjct: 141 KRVWKKETEME--RKKEEKVPSLAELTLPPAELRRLRTVGIRLTKKLKIGKAGITEGIVN 200

Query: 264 EVHSIWANSELVMLNFDLPLCRNMDRAREIVEMKTGGLVVWSKKDNLVAYRGCDYLSRRW 323
            +H  W  +E+V +  +     NM R  +++E KTGGLV+W     ++ YRG +Y    +
Sbjct: 201 GIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNYQYPYF 260

Query: 324 SRKGRVSVQPADDGQM--PGFTVDEEKLDVNLTYSEQSYKLETKDIEKDSSSDGLLMDRN 383
                ++ + A        G     EK  +    +E S    T  + K   + G+     
Sbjct: 261 VSDRDLAHEAASGASSMDQGVVDSREKQSI----AESSAPSITNKMVKPMLTQGVGSPDK 320

Query: 384 LGIKLTDRSLYEREGDRLLDGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRV 443
           +  +L        E DRLL+GLGPRF DWW   PLPVDGDLLP VVP ++ PFRL P  V
Sbjct: 321 VRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPLPVDGDLLPAVVPDYRRPFRLLPYGV 380

Query: 444 RPQLMDDELTYLRKLARPLPVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTN 503
            P+L DDE+T +R+L RPLP HF LGRN  LQGLAVAI+KLWEK   AKIAVK GV NTN
Sbjct: 381 SPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTN 440

Query: 504 NEFMSSELKHLTGGVLLLRNKFFIVLYRGKDFLPGNVANAVIEREIE--------LHQWQ 563
           +E M+ ELK LTGG L+ R+K FIVLYRGKDFLP  V++A+ ER  +        +H  +
Sbjct: 441 SELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPSAVSSAIEERRRQTMIMENSSVHGNK 500

Query: 564 LHEEDARLKASGVLDFNDETSADRSIVGTFSEFQHIQTICRNVHHINNEAAVKIEAEKER 623
           L E +  +K   V +  +  + D+          HIQT     H + +        ++  
Sbjct: 501 LTENEEEIKPRAVKEDIELEAKDQK--------DHIQT-----HQMKSR-------QRNS 560

Query: 624 LEKELRKQEHKLAILKLKIVKAEKDLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKM 683
            E  L K   KL++   K   AEK L  L++       + D+E IT +E+   RKIGLKM
Sbjct: 561 PEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYMLRKIGLKM 620

Query: 684 DNILVLGRRGVFDGVIEGVHQHWKHRELVKVISMQRSFLQVLYTARSLERESGGILVCIE 743
              L+LGRRGVFDG IE +H HWK+RELVK+I  + S       A  LE ESGGILV +E
Sbjct: 621 KPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVE 680

Query: 744 KLKKGHAIIIYRGKNYKRPIDFGGD-LLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAEL 799
            + KG+AII+YRGKNY+RP       LL+KR+ALKRS+E QR  SLK    +    I EL
Sbjct: 681 MVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEEL 720

[Close]

BLAST of Spo00178.1 vs. TAIR (Arabidopsis)
Match: AT3G18390.1 (CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 392.9 bits (1008), Expect = 4.800e-109
Identity = 295/818 (36.06%), Postives = 434/818 (53.06%), Query Frame = 1


		  
Query: 26  SPFSFPTKPLILKNPKPLNSLSSNASSFFLQSRSFNT----KNSDDNINADDEISEDNNT 85
           +P +F   PL  ++  PL S S   SS  L +  F +     +    +     +     +
Sbjct: 4   APLNFTEMPL--RSSLPLTSSSRYCSSPSLHALLFYSLGVKPSRQQIVRPFSSLRTSERS 63

Query: 86  NNNNNGSTISNSSNQVKMPTAPWMKSPLLLPP-------DEVLDLSKPNQRKKKI-SIAE 145
           NN +N +   +  N    PT PW+      PP       D        N    +I S  E
Sbjct: 64  NNRSNNNRRLDQRNH--KPTPPWIDK---WPPSSSGAGGDHAGKKGGENNGGDRIRSAEE 123

Query: 146 ASKADRSLTEKISGRKG-KKVIKKIVHKIERLQTETNLVDTKKNWVD------------- 205
            ++A     EK  G+   ++++ ++ +       E ++ D +   ++             
Sbjct: 124 EAEAKLRYLEKDKGQNAIERIVLRLRNLGLGSDDEDDVEDDEGGGINGGDVKPVTGEERL 183

Query: 206 ---TQKNWDDVGGGFLLGDGGESKLARK--LPWEKEEK------------LVFGRLKREK 265
               ++ W  V    +L +G ES+   +  LPWEK E+            +   + +R +
Sbjct: 184 GDLLKREW--VRPDMMLAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAVMQKRRAR 243

Query: 266 VVTEAELRLDEELLKRLRREASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNFDLP 325
             + AEL +++  L+RLRR+   +R  + + K G +Q V+++++  W   ELV L F   
Sbjct: 244 APSLAELTVEDSELRRLRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEV 303

Query: 326 LCRNMDRAREIVEMKTGGLVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQMPGF 385
           L R+M  A EIVE +TGG+V+W     +V YRG DY       KG     P    QM G 
Sbjct: 304 LARDMKTAHEIVERRTGGMVIWRAGSVMVVYRGLDY-------KG----PPVISNQMAG- 363

Query: 386 TVDEEKLDVNLTYSEQSYKLETKDIEKDSSSDGLLMDRNLGIKLTDRSLYEREGD--RLL 445
              +E L V    S        KD   + S+  ++ D  +   +   ++ E E +   LL
Sbjct: 364 --PKETLFVPDVSSAGDEATNAKD---NQSAPLVIKDPIIKNPIRKENMTEEEVEFNSLL 423

Query: 446 DGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLARPL 505
           D LGPRF +WW    LPVD DLLP  +PG+K PFRL P  +R  L + E+T LRK+ + L
Sbjct: 424 DSLGPRFQEWWGTGVLPVDADLLPPTIPGYKTPFRLLPTGMRSNLTNAEMTNLRKIGKTL 483

Query: 506 PVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVLLLR 565
           P HF LGRN   QGLA AIL++WEKS+ AKIAVK G+ NTNN+ M+ E+K LTGGVLLLR
Sbjct: 484 PCHFALGRNRNHQGLAAAILQIWEKSLIAKIAVKRGIQNTNNKLMADEVKTLTGGVLLLR 543

Query: 566 NKFFIVLYRGKDFLPGNVANAVIEREIELHQWQLHEEDAR-LKASGVLDFNDETSADRSI 625
           NK++IV+YRGKDFLP +VA  + ER+    + Q  EE  R  +   V    D+  A+   
Sbjct: 544 NKYYIVIYRGKDFLPSSVAATLAERQELTKEIQDVEERVRNREIEAVQPVGDKVPAE--- 603

Query: 626 VGTFSEFQHIQTICRNVHHINNEAAVKIEAEKERLEKELRKQEHKLAILKLKIVKAEKDL 685
            GT +EF   Q         ++   +  EA +    + +++ +HKL + + K  +AEK L
Sbjct: 604 AGTLAEFYEAQARWGKEITPDHREKMIEEASRVANARVVKRIQHKLNLAQSKFQRAEKLL 663

Query: 686 GKLDSAWMSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVIEGVHQHWKHR 745
            K++++ + +  + DQE+I+EEER  FRK+GLKM   L +G RGVFDGVIE +H HWKHR
Sbjct: 664 SKIEASMIPNGPDYDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHR 723

Query: 746 ELVKVISMQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNYKRPIDF-GGD 797
           ELVK+IS Q++   V  TAR LE ESGG+LV IEK+ KG A+I YRGKNY+RPI     +
Sbjct: 724 ELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRN 783

[Close]

BLAST of Spo00178.1 vs. TAIR (Arabidopsis)
Match: AT4G29750.1 (CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 379.0 bits (972), Expect = 7.200e-105
Identity = 248/598 (41.47%), Postives = 333/598 (55.69%), Query Frame = 1


		  
Query: 220 REKVVTEAELRLDEELLKRLRREASKMRKWVKVKKIGFSQDVVDEVHSIWANSELVMLNF 279
           R+    EAE  + E  LKRLR  A +M + VKV   G +Q +V+ +H  W   E+V L F
Sbjct: 233 RKSNTVEAERIVPEHELKRLRNVALRMVERVKVGSAGITQALVEAIHEKWEVDEVVKLKF 292

Query: 280 DLPLCRNMDRAREIVEMKTGGLVVWSKKDNLVAYRGCDYLSRRWSRKGRVSVQPADDGQM 339
             P   NM R  E++E KTGGLV+W    ++V YRG  Y                     
Sbjct: 293 SEPYSLNMKRTHEVLEKKTGGLVIWRSGSSVVLYRGISY--------------------- 352

Query: 340 PGFTVDEEKLDVNLTYSEQSYKLETKDIEKD-SSSDGLLMDRNLGIKLTDRSLYER-EGD 399
                   KL    T+ +Q+      +I +   + D +  D N    +    L E  E +
Sbjct: 353 --------KLKCVQTFIKQNNLEANPEIHRSVEARDYVQEDGNYPKNVPKEQLSELCELN 412

Query: 400 RLLDGLGPRFVDWWYPKPLPVDGDLLPEVVPGFKPPFRLCPPRVRPQLMDDELTYLRKLA 459
            LLD +GPRF DW    P PVD DLLP  V G++ PFR+ P  V+P L + E+T +R+LA
Sbjct: 413 DLLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPFRILPQGVKPCLSNTEMTEMRRLA 472

Query: 460 RPLPVHFVLGRNSKLQGLAVAILKLWEKSVFAKIAVKWGVPNTNNEFMSSELKHLTGGVL 519
           R  P HF LGR+ +LQGLA A++KLW KS  AKIA+K GV NT NE M+ ELK LT GVL
Sbjct: 473 RTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIKRGVENTRNERMAEELKRLTRGVL 532

Query: 520 LLRNKFFIVLYRGKDFLPGNVANAVIEREIELHQ-WQLHEEDARLKASGVLDFNDETSAD 579
           + RNK +IV YRG DF+P  VA A+ ER+ E+ +  Q  E+ AR  AS       +  + 
Sbjct: 533 VSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQAKEDQAREMASTRATLTSQAKSP 592

Query: 580 RS--IVGTFSEFQHIQTICRNVHHINNEAAVKIEAEKE-----RLEKELRKQEHKLAILK 639
           ++  + GT +E     TI  +     N ++V IE  K      +    +R  E +L   K
Sbjct: 593 KTQLLAGTLAE-----TIAASSRWAPNASSVDIEELKRESASIKRAALIRDLELRLLYGK 652

Query: 640 LKIVKAEKDLGKLDSAWMSSEQEPDQELITEEERECFRKIGLKMDNILVLGRRGVFDGVI 699
            K+ +AE+DL K+      SE   D E+ITEEER  +RKIGL MD  L+LGRR V+DG I
Sbjct: 653 QKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGLSMDPFLLLGRREVYDGTI 712

Query: 700 EGVHQHWKHRELVKVISMQRSFLQVLYTARSLERESGGILVCIEKLKKGHAIIIYRGKNY 759
           E +H HWKHRELVKVI   +S  QV + A SLE ESGG+LV ++K  KG+AII+YRGKNY
Sbjct: 713 ENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKGYAIILYRGKNY 772

Query: 760 KRPIDF-GGDLLNKRKALKRSLEVQRLGSLKFFAYQRDKEIAELKLKLVDLKSRRNKN 807
           + P      +LL ++KA  RS+E+QR  +LK+     ++ I  LK    D    RNK+
Sbjct: 773 QMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIELLKTGQDDDMETRNKS 796

The following BLAST results are available for this feature:

BLAST of Spo00178.1 vs. NCBI nr
BLAST of Spo00178.1 vs. UniProtKB/TrEMBL
BLAST of Spo00178.1 vs. ExPASy Swiss-Prot
BLAST of Spo00178.1 vs. TAIR (Arabidopsis)

BLAST of Spo00178.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902158642\|gb\|KNA06242.1\|	0.0e+0	99.8	hypothetical protein SOVF_1829...	[more]
gi\|731315878\|ref\|XP_010693304.1\|	0.0e+0	72.6	PREDICTED: chloroplastic group...	[more]
gi\|731417743\|ref\|XP_010660411.1\|	2.2e-228	56.3	PREDICTED: chloroplastic group...	[more]
gi\|731417747\|ref\|XP_010660413.1\|	3.1e-227	56.3	PREDICTED: chloroplastic group...	[more]
gi\|720047418\|ref\|XP_010270810.1\|	6.1e-223	54.8	PREDICTED: chloroplastic group...	[more]

BLAST of Spo00178.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QG47_SPIOL	0.0e+0	99.8	Uncharacterized protein OS=Spi...	[more]
A0A0J8CY95_BETVU	0.0e+0	72.6	Uncharacterized protein OS=Bet...	[more]
M5WXK2_PRUPE	6.0e-209	51.6	Uncharacterized protein OS=Pru...	[more]
A0A0B0PGE0_GOSAR	3.9e-208	55.7	Uncharacterized protein OS=Gos...	[more]
A0A103YGV6_CYNCS	1.9e-207	53.8	RNA-binding, CRM domain-contai...	[more]

BLAST of Spo00178.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
CRS1_ORYSJ	7.1e-155	51.1	Chloroplastic group IIA intron...	[more]
CRS1_MAIZE	1.5e-133	60.2	Chloroplastic group IIA intron...	[more]
CRS1_ARATH	3.8e-132	60.0	Chloroplastic group IIA intron...	[more]
CFM3A_ARATH	6.3e-111	42.4	CRM-domain containing factor C...	[more]
CFM2_ARATH	1.1e-110	42.0	CRM-domain containing factor C...	[more]

BLAST of Spo00178.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G16180.1	2.1e-133	60.0	ortholog of maize chloroplast ...	[more]
AT3G23070.1	3.5e-112	42.4	CRM family member 3A	[more]
AT3G01370.1	6.1e-112	42.0	CRM family member 2	[more]
AT3G18390.1	4.8e-109	36.0	CRS1 / YhbY (CRM) domain-conta...	[more]
AT4G29750.1	7.2e-105	41.4	CRS1 / YhbY (CRM) domain-conta...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	GENE3D	3.30.110.60		coord: 444..535 score: 4.4E-23coord: 231..322 score: 1.2E-13coord: 658..753 score: 1.6
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 231..314 score: 1.3E-17coord: 659..745 score: 5.4E-20coord: 446..529 score: 6.6
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 445..529 score: 1.7E-6coord: 658..745 score: 5.9E-19coord: 231..314 score: 4.
IPR001890	RNA-binding, CRM domain	PROFILE	PS51295	CRM	coord: 656..756 score: 18.358coord: 229..325 score: 15.23coord: 443..540 score: 14
IPR001890	RNA-binding, CRM domain	unknown	SSF75471	YhbY-like	coord: 657..753 score: 2.88E-22coord: 445..535 score: 2.49E-16coord: 230..322 score: 1.31
None	No IPR available	unknown	Coil	Coil	coord: 222..242 score: -coord: 600..638 scor
None	No IPR available	PANTHER	PTHR31846	FAMILY NOT NAMED	coord: 203..806 score:
None	No IPR available	PANTHER	PTHR31846:SF10	CHLOROPLASTIC GROUP IIA INTRON SPLICING FACILITATOR CRS1, CHLOROPLASTIC	coord: 203..806 score:

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding