Spo19452.1 (mRNA) | SpinachBase

Overview


Name	Spo19452.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 34014922 .. 34016788 (-)
Sequence length	1683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAACCAACTGATGATATAATGTCAATGGACAAACCAACTGTTCTTGTTAATATTTTGGATAAAGTTTCAGGCAAAAACCTCATCTTTGAGGCTGCTCCTTTGCTCAAGACAACTGATATAGTCAAACAGGATCATCAGTTTGAACAATTTCGGAGCATTACTCTATCTGGTACTGACTGTTCTGCTGAGGTGGAGTACTTCGCACCGACTTTTGGTATGTTTGCCCAAGTTGAGGTCAAACTTTTTAAGTCGCGATTTGTGGGAAGTGAGAGCGATGAAGAGGTAGAGGTAGAGGTAGAGGAAGGGGAAGGGGAAGGTGAAGAGCTTGATGTATATGGGAAAATTTCTGCTGAGTATAAACTTTATGGCTCTGAAAAGCAAGTCCATAGCGTTACTCTTTTCGAGATTAAAAAGGGTTCTAATAAGCTTGGACAAGTAATATTGGGGTCTCCTATTTCCCTGTCTAGATCAGTGGTGCCGTTCCTGCATATTCAACTCTCACAATTTCCGTAGAAGTATGGGATGGTGCTAAGAATGAGATAGTTTTCGGGGGAAGTTGTGAGTTTGAAACTGATAACTATAGCAGGGAGCAAGACATCATTCGTGGTCCAGATTGTTTACATGCTCAAGTGTTTACTGAATGGAGGGAACCATTTATGCTGGATAAATCATATAACAAAATGGATAGGTTGGGATTGAACACTGTACGTCACTTCTCAATCCTGGTATGTTTTTTTTTCACTTTGTGCTTTCTCATTTTTCCTAGTATTTGATGATGTACTTTTTTCTGCTTTAAATTGACCTTTCCTTGTCACTTGTATGTTCAGCCCAACCCAGGAGAGTTCACGGCACATCGAGAAGTAGAGGTGTTCTCTATATTTGTAGGTCGGCCAAATGAGCAGAAGTTAAGTCTCCATGGCATGGTTAACTTTTACAGTAATTGGGGTCCGATTAATATCTTTGGAAGGGACAAGAATGAACCCTATATATTGTACCCTGGCTGCAACTTATTACCTCTAAAATTCCCCACGTATCTTCTCTCACCGGGGGACTTTTTTGGTATGTCAGTAAACCTTGAAGATGTTGAGGGTCATGTGTCGATCAAAGGAGAAGTGGTGTCCTTGGCAAGATTGCCTCTTGTGTTCTGTTATTAAAGGTGCAAATCATCATTGCTTTGCATCTGTTCATTACACGGTCTTCTCGTTTGCAGTTCACTGTGTACTTAAAGTTGGTTTCCTTTTCAAGGATCATCAACATTTTGCTGATGCTGATGCTGATGCTGATGCTGATGCTTGTAGCAAACTTCATGGGAGTATCGTTGCTCGCTATAAAAAGTATGGTGACAAAACATCTTATGAAAGATTATATTTCAGGAGTGTACTTTTTGAGAGGACTTTGGGAAATCCTTTAGAAAAGATAGGTAAGGATTTTGAGATGGAGCTTTCGAAACCTGTGGTTGTTGTTCCGTATGATTCTTCCTTGTTTATAGACGTAGATTTGAGTTGCCGATATGGTGGTTATACTCGCCTTATAAATGGCACTAGAGAATTTCAAATTGGCATTGGTGTTGGTGATGGTGTGACAATTAAAGGAGATAAAGTTGGCATCAATATCACTATGGCATGGAGCCGACCTCATTAATTAGTACTAGATTTGTTGCTTAATTTATAGTAGTAGTTTTGTTTCTCATGTCGTTTGTAATAACTTTATCTGTATGATGAATGTATAAATATGATATTCTTATGAAATCTATGATCACTGAAGATCTCCTTTATGTCTAGATTTCCTTGTGAAAGATGATCTGATCTGTGTAATCGTGCTGGGACTTTCCGTATAAACAGTGGCGGATCTTATAGGAGGG

mRNA sequence

ATGGACAAACCAACTGATGATATAATGTCAATGGACAAACCAACTGTTCTTGTTAATATTTTGGATAAAGTTTCAGGCAAAAACCTCATCTTTGAGGCTGCTCCTTTGCTCAAGACAACTGATATAGTCAAACAGGATCATCAGTTTGAACAATTTCGGAGCATTACTCTATCTGGTACTGACTGTTCTGCTGAGGTGGAGTACTTCGCACCGACTTTTGGTATGTTTGCCCAAGTTGAGGTCAAACTTTTTAAGTCGCGATTTGTGGGAAGTGAGAGCGATGAAGAGGTAGAGGTAGAGGTAGAGGAAGGGGAAGGGGAAGGTGAAGAGCTTGATGTATATGGGAAAATTTCTGCTGAGTATAAACTTTATGGCTCTGAAAAGCAAATCAGTGGTGCCGTTCCTGCATATTCAACTCTCACAATTTCCGTAGAAGTATGGGATGGTGCTAAGAATGAGATAGTTTTCGGGGGAAGTTGTGAGTTTGAAACTGATAACTATAGCAGGGAGCAAGACATCATTCGTGGTCCAGATTGTTTACATGCTCAAGTGTTTACTGAATGGAGGGAACCATTTATGCTGGATAAATCATATAACAAAATGGATAGGTTGGGATTGAACACTGTACGTCACTTCTCAATCCTGGTATCCCAACCCAGGAGAGTTCACGGCACATCGAGAAGTAGAGGTGTTCTCTATATTTGTAGGTCGGCCAAATGAGCAGAAGTTAAGTCTCCATGGCATGGTTAACTTTTACAGTAATTGGGGTCCGATTAATATCTTTGGAAGGGACAAGAATGAACCCTATATATTGTACCCTGGCTGCAACTTATTACCTCTAAAATTCCCCACGTATCTTCTCTCACCGGGGGACTTTTTTGGTATGTCAGTAAACCTTGAAGATGTTGAGGGTCATGTGTCGATCAAAGGAGAAGTGGTGTCCTTGGCAAGATTGCCTCTTGTGTTCTGTTATTAAAGGTGCAAATCATCATTGCTTTGCATCTGTTCATTACACGGTCTTCTCGTTTGCAGTTCACTGTGTACTTAAAGTTGGTTTCCTTTTCAAGGATCATCAACATTTTGCTGATGCTGATGCTGATGCTGATGCTGATGCTTGTAGCAAACTTCATGGGAGTATCGTTGCTCGCTATAAAAAGTATGGTGACAAAACATCTTATGAAAGATTATATTTCAGGAGTGTACTTTTTGAGAGGACTTTGGGAAATCCTTTAGAAAAGATAGGTAAGGATTTTGAGATGGAGCTTTCGAAACCTGTGGTTGTTGTTCCGTATGATTCTTCCTTGTTTATAGACGTAGATTTGAGTTGCCGATATGGTGGTTATACTCGCCTTATAAATGGCACTAGAGAATTTCAAATTGGCATTGGTGTTGGTGATGGTGTGACAATTAAAGGAGATAAAGTTGGCATCAATATCACTATGGCATGGAGCCGACCTCATTAATTAGTACTAGATTTGTTGCTTAATTTATAGTAGTAGTTTTGTTTCTCATGTCGTTTGTAATAACTTTATCTGTATGATGAATGTATAAATATGATATTCTTATGAAATCTATGATCACTGAAGATCTCCTTTATGTCTAGATTTCCTTGTGAAAGATGATCTGATCTGTGTAATCGTGCTGGGACTTTCCGTATAAACAGTGGCGGATCTTATAGGAGGG

Coding sequence (CDS)

ATGGACAAACCAACTGATGATATAATGTCAATGGACAAACCAACTGTTCTTGTTAATATTTTGGATAAAGTTTCAGGCAAAAACCTCATCTTTGAGGCTGCTCCTTTGCTCAAGACAACTGATATAGTCAAACAGGATCATCAGTTTGAACAATTTCGGAGCATTACTCTATCTGGTACTGACTGTTCTGCTGAGGTGGAGTACTTCGCACCGACTTTTGGTATGTTTGCCCAAGTTGAGGTCAAACTTTTTAAGTCGCGATTTGTGGGAAGTGAGAGCGATGAAGAGGTAGAGGTAGAGGTAGAGGAAGGGGAAGGGGAAGGTGAAGAGCTTGATGTATATGGGAAAATTTCTGCTGAGTATAAACTTTATGGCTCTGAAAAGCAAATCAGTGGTGCCGTTCCTGCATATTCAACTCTCACAATTTCCGTAGAAGTATGGGATGGTGCTAAGAATGAGATAGTTTTCGGGGGAAGTTGTGAGTTTGAAACTGATAACTATAGCAGGGAGCAAGACATCATTCGTGGTCCAGATTGTTTACATGCTCAAGTGTTTACTGAATGGAGGGAACCATTTATGCTGGATAAATCATATAACAAAATGGATAGGTTGGGATTGAACACTGTACGTCACTTCTCAATCCTGGTATCCCAACCCAGGAGAGTTCACGGCACATCGAGAAGTAGAGGTGTTCTCTATATTTGTAGGTCGGCCAAATGA

Protein sequence

MDKPTDDIMSMDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITLSGTDCSAEVEYFAPTFGMFAQVEVKLFKSRFVGSESDEEVEVEVEEGEGEGEELDVYGKISAEYKLYGSEKQISGAVPAYSTLTISVEVWDGAKNEIVFGGSCEFETDNYSREQDIIRGPDCLHAQVFTEWREPFMLDKSYNKMDRLGLNTVRHFSILVSQPRRVHGTSRSRGVLYICRSAK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo19452	Spo19452	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo19452.1	Spo19452.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19452.1.CDS.3	Spo19452.1.CDS.3	CDS
Spo19452.1.CDS.2	Spo19452.1.CDS.2	CDS
Spo19452.1.CDS.1	Spo19452.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19452.1.utr3p.1	Spo19452.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19452.1.exon.3	Spo19452.1.exon.3	exon
Spo19452.1.exon.2	Spo19452.1.exon.2	exon
Spo19452.1.exon.1	Spo19452.1.exon.1	exon

Homology

[Close]

BLAST of Spo19452.1 vs. NCBI nr
Match: gi|902178566|gb|KNA09165.1| (hypothetical protein SOVF_156040 [Spinacia oleracea])

HSP 1 Score: 364.4 bits (934), Expect = 1.500e-97
Identity = 197/234 (84.19%), Postives = 201/234 (85.90%), Query Frame = 1

		  
Query: 1   MDKPT---DDIMSMDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITL 60
           MDKP    DDIMSMDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITL
Sbjct: 1   MDKPXTGPDDIMSMDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITL 60

Query: 61  SGTDCSAEVEYFAPTFGMFAQVEVKLFKSRFVGSESDEEVEVEVE--EGEGEGEELDVYG 120
           SGTDCSAEVEYFAPTFGMFAQVEVKLFKSRFVGSESDEEVEVEVE  EGEGEGEELDVYG
Sbjct: 61  SGTDCSAEVEYFAPTFGMFAQVEVKLFKSRFVGSESDEEVEVEVEEGEGEGEGEELDVYG 120

Query: 121 KISAEYKLYGSEKQIS--------------GAVPAYSTLTISVEVWDGAKNEIVFGGSCE 180
           KISAEYKLYGSEKQ+               G V   S +++S  V     NEIVFGGSCE
Sbjct: 121 KISAEYKLYGSEKQVHSVTLFEIKKGSNKLGQVILGSPISLSRSV-----NEIVFGGSCE 180

Query: 181 FETDNYSREQDIIRGPDCLHAQVFTEWREPFMLDKSYNKMDRLGLNTVRHFSIL 216
           FETDNYSREQDIIRGPDCLHAQVFTEWREPFMLDKSYNKMDRLGLNTVRHFSIL
Sbjct: 181 FETDNYSREQDIIRGPDCLHAQVFTEWREPFMLDKSYNKMDRLGLNTVRHFSIL 229

[Close]

BLAST of Spo19452.1 vs. NCBI nr
Match: gi|902136507|gb|KNA04462.1| (hypothetical protein SOVF_199510 [Spinacia oleracea])

HSP 1 Score: 139.0 bits (349), Expect = 1.000e-29
Identity = 99/263 (37.64%), Postives = 136/263 (51.71%), Query Frame = 1

		  
Query: 6   DDIMSMDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITLSG---TDC 65
           DDIMSMD+P + ++I D+V G+ ++    PL+KT D+ KQ+H FEQF  + + G   + C
Sbjct: 117 DDIMSMDRPFIGLDIFDRVVGETIVNGFKPLVKTVDMAKQNHTFEQFNKLMVHGHHESGC 176

Query: 66  SAEVEYFAPTFGMFAQVEVKLFKSRFVGSESDEEVEVEVEEGEGEGEELDVYGKISAEYK 125
           SAE+EY A TFG+FA VEV+L K R       EE E   E+G        VYG ISA Y 
Sbjct: 177 SAELEYLALTFGVFATVEVQLIKGRGNKRRIGEEKE---EKG------FKVYGTISASYN 236

Query: 126 LYGSEKQISG-----------------------------AVPAYSTLTISVEVWDGAKNE 185
           L  SE +++                              AVPAYS+LTI VE+WD A  +
Sbjct: 237 LLCSESKVNRIMLFETKEDSNDFKWVRLGCPLALSRSVVAVPAYSSLTIQVELWDFATKK 296

Query: 186 IVFGGSCEFETDNYSREQDIIRGPDCLHAQVFTEWREPFMLDKSYNKMD-RLGLNT---- 225
           ++  GS +FET N+ R +  I G   L A+V   W +PF LD    K     G+++    
Sbjct: 297 LIVQGSNKFETTNH-RAEKTITGLSNLDAEVTIVWEKPFKLDDPVAKKSINCGIHSHFWA 356

[Close]

BLAST of Spo19452.1 vs. NCBI nr
Match: gi|902203370|gb|KNA14525.1| (hypothetical protein SOVF_105880 [Spinacia oleracea])

HSP 1 Score: 68.2 bits (165), Expect = 2.300e-8
Identity = 42/122 (34.43%), Postives = 74/122 (60.66%), Query Frame = 1

		  
Query: 11  MDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITLS--GTDCSAEVEY 70
           +DKP + ++I +K +GK+++  +  L+K+ D    D  FEQF  +++S  G+  SA V+Y
Sbjct: 95  LDKPFIAMDIREKTTGKSIVEGSTRLIKSID--NDDDVFEQFGKVSISSDGSGASATVDY 154

Query: 71  FAPTFGMFAQVEVKLFKSRF--VGSESDEEVEVEVEEGEGEGEELDVYGKISAEYKLYGS 129
            A  + +FA V + L  S    V  + +++ + E EE + E E L+VYGK++A + LY +
Sbjct: 155 LALRYAVFAAVRIDLLDSNADEVYDKPEDDDDDEDEEDKDEEEVLEVYGKVTANFSLYST 214

[Close]

BLAST of Spo19452.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPI2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_156040 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.100e-97
Identity = 197/234 (84.19%), Postives = 201/234 (85.90%), Query Frame = 1

		  
Query: 1   MDKPT---DDIMSMDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITL 60
           MDKP    DDIMSMDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITL
Sbjct: 1   MDKPXTGPDDIMSMDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITL 60

Query: 61  SGTDCSAEVEYFAPTFGMFAQVEVKLFKSRFVGSESDEEVEVEVE--EGEGEGEELDVYG 120
           SGTDCSAEVEYFAPTFGMFAQVEVKLFKSRFVGSESDEEVEVEVE  EGEGEGEELDVYG
Sbjct: 61  SGTDCSAEVEYFAPTFGMFAQVEVKLFKSRFVGSESDEEVEVEVEEGEGEGEGEELDVYG 120

Query: 121 KISAEYKLYGSEKQIS--------------GAVPAYSTLTISVEVWDGAKNEIVFGGSCE 180
           KISAEYKLYGSEKQ+               G V   S +++S  V     NEIVFGGSCE
Sbjct: 121 KISAEYKLYGSEKQVHSVTLFEIKKGSNKLGQVILGSPISLSRSV-----NEIVFGGSCE 180

Query: 181 FETDNYSREQDIIRGPDCLHAQVFTEWREPFMLDKSYNKMDRLGLNTVRHFSIL 216
           FETDNYSREQDIIRGPDCLHAQVFTEWREPFMLDKSYNKMDRLGLNTVRHFSIL
Sbjct: 181 FETDNYSREQDIIRGPDCLHAQVFTEWREPFMLDKSYNKMDRLGLNTVRHFSIL 229

[Close]

BLAST of Spo19452.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QB02_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_199510 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.300e-30
Identity = 99/263 (37.64%), Postives = 136/263 (51.71%), Query Frame = 1

		  
Query: 6   DDIMSMDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITLSG---TDC 65
           DDIMSMD+P + ++I D+V G+ ++    PL+KT D+ KQ+H FEQF  + + G   + C
Sbjct: 117 DDIMSMDRPFIGLDIFDRVVGETIVNGFKPLVKTVDMAKQNHTFEQFNKLMVHGHHESGC 176

Query: 66  SAEVEYFAPTFGMFAQVEVKLFKSRFVGSESDEEVEVEVEEGEGEGEELDVYGKISAEYK 125
           SAE+EY A TFG+FA VEV+L K R       EE E   E+G        VYG ISA Y 
Sbjct: 177 SAELEYLALTFGVFATVEVQLIKGRGNKRRIGEEKE---EKG------FKVYGTISASYN 236

Query: 126 LYGSEKQISG-----------------------------AVPAYSTLTISVEVWDGAKNE 185
           L  SE +++                              AVPAYS+LTI VE+WD A  +
Sbjct: 237 LLCSESKVNRIMLFETKEDSNDFKWVRLGCPLALSRSVVAVPAYSSLTIQVELWDFATKK 296

Query: 186 IVFGGSCEFETDNYSREQDIIRGPDCLHAQVFTEWREPFMLDKSYNKMD-RLGLNT---- 225
           ++  GS +FET N+ R +  I G   L A+V   W +PF LD    K     G+++    
Sbjct: 297 LIVQGSNKFETTNH-RAEKTITGLSNLDAEVTIVWEKPFKLDDPVAKKSINCGIHSHFWA 356

[Close]

BLAST of Spo19452.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4U5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105880 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.600e-8
Identity = 42/122 (34.43%), Postives = 74/122 (60.66%), Query Frame = 1

		  
Query: 11  MDKPTVLVNILDKVSGKNLIFEAAPLLKTTDIVKQDHQFEQFRSITLS--GTDCSAEVEY 70
           +DKP + ++I +K +GK+++  +  L+K+ D    D  FEQF  +++S  G+  SA V+Y
Sbjct: 95  LDKPFIAMDIREKTTGKSIVEGSTRLIKSID--NDDDVFEQFGKVSISSDGSGASATVDY 154

Query: 71  FAPTFGMFAQVEVKLFKSRF--VGSESDEEVEVEVEEGEGEGEELDVYGKISAEYKLYGS 129
            A  + +FA V + L  S    V  + +++ + E EE + E E L+VYGK++A + LY +
Sbjct: 155 LALRYAVFAAVRIDLLDSNADEVYDKPEDDDDDEDEEDKDEEEVLEVYGKVTANFSLYST 214

The following BLAST results are available for this feature:

BLAST of Spo19452.1 vs. NCBI nr
BLAST of Spo19452.1 vs. UniProtKB/TrEMBL
BLAST of Spo19452.1 vs. ExPASy Swiss-Prot
BLAST of Spo19452.1 vs. TAIR (Arabidopsis)

BLAST of Spo19452.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902178566\|gb\|KNA09165.1\|	1.5e-97	84.1	hypothetical protein SOVF_1560...	[more]
gi\|902136507\|gb\|KNA04462.1\|	1.0e-29	37.6	hypothetical protein SOVF_1995...	[more]
gi\|902203370\|gb\|KNA14525.1\|	2.3e-8	34.4	hypothetical protein SOVF_1058...	[more]

BLAST of Spo19452.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QPI2_SPIOL	1.1e-97	84.1	Uncharacterized protein OS=Spi...	[more]
A0A0K9QB02_SPIOL	7.3e-30	37.6	Uncharacterized protein OS=Spi...	[more]
A0A0K9R4U5_SPIOL	1.6e-8	34.4	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo19452.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo19452.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description