Spo25598.1 (mRNA) | SpinachBase

Overview


Name	Spo25598.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	60S ribosomal protein L44
Location	chr1 : 37412892 .. 37413209 (+)
Sequence length	318

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAACATCCCAAAAACGAAGAAAACCTACTGCAAGAACAAAGAGTGCAAGAAGCACACAACCCACAAAGTGACCCAATACAAGAAGGGCAAAGACAGTTTGGCTGCGCAGGGAAAACGCCGTTACGATCGCAAGCAATCTGGCTATGGCGGTCAGACTAAGCCTGTTTTCCACAAGAAGGCTAAGACTACCAAGAAGATTGTTCTGAGGCTTCAGTGTCAGTCGTGCAAGCATGTGTCGCAGCACCCAATTAAGCGTTGCAAGCACTTTGAGATTGGTGGTGATAAGAAGGGCAAGGGTACTACCTTGTTTTAG

mRNA sequence

ATGGTGAACATCCCAAAAACGAAGAAAACCTACTGCAAGAACAAAGAGTGCAAGAAGCACACAACCCACAAAGTGACCCAATACAAGAAGGGCAAAGACAGTTTGGCTGCGCAGGGAAAACGCCGTTACGATCGCAAGCAATCTGGCTATGGCGGTCAGACTAAGCCTGTTTTCCACAAGAAGGCTAAGACTACCAAGAAGATTGTTCTGAGGCTTCAGTGTCAGTCGTGCAAGCATGTGTCGCAGCACCCAATTAAGCGTTGCAAGCACTTTGAGATTGGTGGTGATAAGAAGGGCAAGGGTACTACCTTGTTTTAG

Coding sequence (CDS)

ATGGTGAACATCCCAAAAACGAAGAAAACCTACTGCAAGAACAAAGAGTGCAAGAAGCACACAACCCACAAAGTGACCCAATACAAGAAGGGCAAAGACAGTTTGGCTGCGCAGGGAAAACGCCGTTACGATCGCAAGCAATCTGGCTATGGCGGTCAGACTAAGCCTGTTTTCCACAAGAAGGCTAAGACTACCAAGAAGATTGTTCTGAGGCTTCAGTGTCAGTCGTGCAAGCATGTGTCGCAGCACCCAATTAAGCGTTGCAAGCACTTTGAGATTGGTGGTGATAAGAAGGGCAAGGGTACTACCTTGTTTTAG

Protein sequence

MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo25598	Spo25598	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo25598.1	Spo25598.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25598.1.exon.1	Spo25598.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo25598.1.CDS.1	Spo25598.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo25598.1 vs. NCBI nr
Match: gi|224094107|ref|XP_002310076.1| (hypothetical protein POPTR_0007s07730g [Populus trichocarpa])

HSP 1 Score: 213.4 bits (542), Expect = 1.900e-52
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. NCBI nr
Match: gi|590621608|ref|XP_007024824.1| (Zinc-binding ribosomal protein family protein [Theobroma cacao])

HSP 1 Score: 212.2 bits (539), Expect = 4.300e-52
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQ+CKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQACKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. NCBI nr
Match: gi|769803427|ref|XP_011625945.1| (PREDICTED: 60S ribosomal protein L44 isoform X2 [Amborella trichopoda])

HSP 1 Score: 211.8 bits (538), Expect = 5.600e-52
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNKECKKHT HKVTQYKKGKDSLA QGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAVQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. NCBI nr
Match: gi|901795705|gb|KMZ58640.1| (60S ribosomal protein L44 [Zostera marina])

HSP 1 Score: 211.1 bits (536), Expect = 9.500e-52
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNK+CKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKQCKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH+SQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. NCBI nr
Match: gi|460391881|ref|XP_004241547.1| (PREDICTED: 60S ribosomal protein L44 [Solanum lycopersicum])

HSP 1 Score: 210.3 bits (534), Expect = 1.600e-51
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCK+KECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH+SQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Match: A9PD13_POPTR (60S ribosomal protein L36a/L44 OS=Populus trichocarpa GN=POPTR_0007s07730g PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.300e-52
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Match: A0A061GCY8_THECC (Zinc-binding ribosomal protein family protein OS=Theobroma cacao GN=TCM_029290 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.000e-52
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQ+CKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQACKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Match: A0A0K9NRP7_ZOSMR (60S ribosomal protein L44 OS=Zostera marina GN=ZOSMA_22G01510 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.600e-52
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCKNK+CKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKQCKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH+SQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Match: K4C8M5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.100e-51
Identity = 100/105 (95.24%), Postives = 104/105 (99.05%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCK+KECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH+SQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHMSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Match: Q00508_CANMA (Ribosomal protein L41 OS=Candida maltosa PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.500e-51
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCK+KECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQ CKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 208.8 bits (530), Expect = 3.000e-53
Identity = 99/105 (94.29%), Postives = 103/105 (98.10%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKTKKTYCK+KEC+KHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQ CKHVSQHPIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 206.8 bits (525), Expect = 1.100e-52
Identity = 100/105 (95.24%), Postives = 101/105 (96.19%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNIPKTK TYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH SQ PIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.1 bits (440), Expect = 8.100e-43
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG  +
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104

[Close]

BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 172.9 bits (437), Expect = 1.800e-42
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNIPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG  L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]

BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 1.800e-42
Identity = 82/104 (78.85%), Postives = 91/104 (87.50%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNIPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTL 105
           KAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG  L
Sbjct: 61  KAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104

[Close]

BLAST of Spo25598.1 vs. TAIR (Arabidopsis)
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 206.8 bits (525), Expect = 6.300e-54
Identity = 100/105 (95.24%), Postives = 101/105 (96.19%), Query Frame = 1

		  
Query: 1   MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
           MVNIPKTK TYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61  KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTTLF 106
           KAKTTKKIVLRLQCQSCKH SQ PIKRCKHFEIGGDKKGKGT+LF
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105

[Close]

BLAST of Spo25598.1 vs. TAIR (Arabidopsis)
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein)

HSP 1 Score: 183.0 bits (463), Expect = 9.800e-47
Identity = 89/93 (95.70%), Postives = 89/93 (95.70%), Query Frame = 1

		  
Query: 1  MVNIPKTKKTYCKNKECKKHTTHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
          MVNIPKTK TYCKNKECKKHT HKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1  MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 61 KAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEI 94
          KAKTTKKIVLRLQCQSCKH SQ PIKRCKHFEI
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEI 93

The following BLAST results are available for this feature:

BLAST of Spo25598.1 vs. NCBI nr
BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
BLAST of Spo25598.1 vs. TAIR (Arabidopsis)

BLAST of Spo25598.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|224094107\|ref\|XP_002310076.1\|	1.9e-52	97.1	hypothetical protein POPTR_000...	[more]
gi\|590621608\|ref\|XP_007024824.1\|	4.3e-52	96.1	Zinc-binding ribosomal protein...	[more]
gi\|769803427\|ref\|XP_011625945.1\|	5.6e-52	96.1	PREDICTED: 60S ribosomal prote...	[more]
gi\|901795705\|gb\|KMZ58640.1\|	9.5e-52	95.2	60S ribosomal protein L44 [Zos...	[more]
gi\|460391881\|ref\|XP_004241547.1\|	1.6e-51	95.2	PREDICTED: 60S ribosomal prote...	[more]

BLAST of Spo25598.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A9PD13_POPTR	1.3e-52	97.1	60S ribosomal protein L36a/L44...	[more]
A0A061GCY8_THECC	3.0e-52	96.1	Zinc-binding ribosomal protein...	[more]
A0A0K9NRP7_ZOSMR	6.6e-52	95.2	60S ribosomal protein L44 OS=Z...	[more]
K4C8M5_SOLLC	1.1e-51	95.2	Uncharacterized protein OS=Sol...	[more]
Q00508_CANMA	1.5e-51	95.2	Ribosomal protein L41 OS=Candi...	[more]

BLAST of Spo25598.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
RL44_GOSHI	3.0e-53	94.2	60S ribosomal protein L44 OS=G...	[more]
RL36A_ARATH	1.1e-52	95.2	60S ribosomal protein L36a OS=...	[more]
RL44_PHARH	8.1e-43	77.8	60S ribosomal protein L44 OS=P...	[more]
RL44_COPC7	1.8e-42	78.8	60S ribosomal protein L44 OS=C...	[more]
RL44_COPCI	1.8e-42	78.8	60S ribosomal protein L44 OS=C...	[more]

BLAST of Spo25598.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT3G23390.1	6.3e-54	95.2	Zinc-binding ribosomal protein...	[more]
AT4G14320.2	9.8e-47	95.7	Zinc-binding ribosomal protein...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000552	Ribosomal protein L44e	PRODOM	PD002841		coord: 20..93 score: 3.0
IPR000552	Ribosomal protein L44e	GENE3D	3.10.450.80		coord: 2..95 score: 1.5
IPR000552	Ribosomal protein L44e	PANTHER	PTHR10369	60S RIBOSOMAL PROTEIN L36A/L44	coord: 1..105 score: 2.9E
IPR000552	Ribosomal protein L44e	PFAM	PF00935	Ribosomal_L44	coord: 19..94 score: 1.3
IPR000552	Ribosomal protein L44e	PROSITE	PS01172	RIBOSOMAL_L44E	coord: 63..74 scor
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 2..94 score: 3.3
None	No IPR available	PANTHER	PTHR10369:SF3	IP17351P	coord: 1..105 score: 2.9E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome