Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGTAGCATATCGTCAAATATTATTCTACACAATCCATGCCCATCTATATATTATCCATTATAATTAGAAGCATAGTCATCAAAAGCAAATAAAAATGGCACAATTAAGAAAATTGGAGGGACAAGTAGAGGTGAATTGCTCAGCAGAAAAGTTATTTAAGATGAACATGGCTAAACAACCCAACATTCCCAACATATGTTTTAACATGTGTAGGGTTGAAGCTCATCAAGGCGATTGGGAAAGGGTTGGTAGCACCAGAAGATGGGACTATAACATTGGTATTTTTTCAATTTTTATTATGTTTACTCATTGAATATTTAATATATTTACAACATACTCCCTCTCTGTTTCATAATGTTCTTCACTTTTCCATTATGCGCGGTTTTCAGTGCACTACTTAGACCATTAATAGTTTTAATTTCGCATTAGAAAAAATTATTAAAAAAATGATATTTAGAAAATTTATATTAAAACGAATCCAATGATATCCACAAGATAATATTTTTACTCTTAATTATATTATTAATTACGGTCAAAGTTTTTATGAGGAACATTATGAAACAGATGGAGTATGTTCCAACGGTGGCAGATCTTCTCTATGCCCTGACCCAATACGGTAAATTTCATAGTGTGCTTTTAATTCCTTCCCTTAAAATTAGAGTGTAATTATGTTTATCTCTTATTGTATTGTTTAGTTATTTGTTGGTCTATCCCCTTAGTTAAACCGTTTAAGATGGACCACTCCACACCAAAATACCACTATATAAAAATGAAAGACCATATGCCAACACTTAATTTGAACTTATGTCGTACGAATTGAATTAATTTGAAATCTAATTATGATTGATTGCAACTGAACAGATGGAAAGTCACAATATCTGATAGAGAGGATTGAAATAAATGATGAGAAGAACAAGATTATACATCGTAGAGCGATCGATGGAGATATAATGAAAAATCAATACAAAACATTTGCAAGCACATTGTGTGTAATCCCAAAGGGAAATTCATGTTGTGTGGTGAAAATTAGTCTAGAGTATGAGAAGATGAATGAAGATGCACCGGAACCTCATCAATTGCTGCAATTTGGACTTGTTATATTCAAGGATCTCGCTTCTCACCTATCGAATGTTAATTGAATTAACTATGTCTTGACGACTTAGCCTAATGATTAAGACTGGGAGCTTGGTTAGAATTATACAATAGATCAAGATTTAAATCTCCCTTAATTTTATATTTGCCCTTATAGCTCATTCGGCAAAAGAAAAGCATATTAAGGACAACAAATTAAAGCCACCATTATATTGTCCTAGTTATGTGAGCTTTTTACTCAATAATTAAGTTTATATACATGTACTCTCCATTTTTTTTAAAATAGAAACTTATATACAACGACATTATGTGTAACACCAAGGTTATATTCTTACCAAATAGTTACTCGTTGTAATCAAATAGTTATGTATTTTAATTAAATAGTTAAAATAATTTTTTAGAAGAAATTAAATAGTTACCCTTTGTCATCTTACTACTATATACGAAGTATTTATTTTTGACATCAATTGTATTACGCGTATGTCGGTGTCATATAAGATCTACAGCCCCTGTGTTTCTACTACGTAATTGATAGTCATATATACATTCCATTTGATCAAAGGAACTTTTATTTTTACCATTAAGACCTAATTTGTTATCATGGTCTTACTATCTAATTAATTGTAAGATTACAATTTAAATCATAGTTACATGATTGTTACTTGTGTGGAAAACTTATTTTCTCAAAAAAAA AAAAGTAGCATATCGTCAAATATTATTCTACACAATCCATGCCCATCTATATATTATCCATTATAATTAGAAGCATAGTCATCAAAAGCAAATAAAAATGGCACAATTAAGAAAATTGGAGGGACAAGTAGAGGTGAATTGCTCAGCAGAAAAGTTATTTAAGATGAACATGGCTAAACAACCCAACATTCCCAACATATGTTTTAACATGTGTAGGGTTGAAGCTCATCAAGGCGATTGGGAAAGGGTTGGTAGCACCAGAAGATGGGACTATAACATTGATGGAAAGTCACAATATCTGATAGAGAGGATTGAAATAAATGATGAGAAGAACAAGATTATACATCGTAGAGCGATCGATGGAGATATAATGAAAAATCAATACAAAACATTTGCAAGCACATTGTGTGTAATCCCAAAGGGAAATTCATGTTGTGTGGTGAAAATTAGTCTAGAGTATGAGAAGATGAATGAAGATGCACCGGAACCTCATCAATTGCTGCAATTTGGACTTGTTATATTCAAGGATCTCGCTTCTCACCTATCGAATGTTAATTGAATTAACTATGTCTTGACGACTTAGCCTAATGATTAAGACTGGGAGCTTGGTTAGAATTATACAATAGATCAAGATTTAAATCTCCCTTAATTTTATATTTGCCCTTATAGCTCATTCGGCAAAAGAAAAGCATATTAAGGACAACAAATTAAAGCCACCATTATATTGTCCTAGTTATGTGAGCTTTTTACTCAATAATTAAGTTTATATACATGTACTCTCCATTTTTTTTAAAATAGAAACTTATATACAACGACATTATGTGTAACACCAAGGTTATATTCTTACCAAATAGTTACTCGTTGTAATCAAATAGTTATGTATTTTAATTAAATAGTTAAAATAATTTTTTAGAAGAAATTAAATAGTTACCCTTTGTCATCTTACTACTATATACGAAGTATTTATTTTTGACATCAATTGTATTACGCGTATGTCGGTGTCATATAAGATCTACAGCCCCTGTGTTTCTACTACGTAATTGATAGTCATATATACATTCCATTTGATCAAAGGAACTTTTATTTTTACCATTAAGACCTAATTTGTTATCATGGTCTTACTATCTAATTAATTGTAAGATTACAATTTAAATCATAGTTACATGATTGTTACTTGTGTGGAAAACTTATTTTCTCAAAAAAAA ATGGCACAATTAAGAAAATTGGAGGGACAAGTAGAGGTGAATTGCTCAGCAGAAAAGTTATTTAAGATGAACATGGCTAAACAACCCAACATTCCCAACATATGTTTTAACATGTGTAGGGTTGAAGCTCATCAAGGCGATTGGGAAAGGGTTGGTAGCACCAGAAGATGGGACTATAACATTGATGGAAAGTCACAATATCTGATAGAGAGGATTGAAATAAATGATGAGAAGAACAAGATTATACATCGTAGAGCGATCGATGGAGATATAATGAAAAATCAATACAAAACATTTGCAAGCACATTGTGTGTAATCCCAAAGGGAAATTCATGTTGTGTGGTGAAAATTAGTCTAGAGTATGAGAAGATGAATGAAGATGCACCGGAACCTCATCAATTGCTGCAATTTGGACTTGTTATATTCAAGGATCTCGCTTCTCACCTATCGAATGTTAATTGA MAQLRKLEGQVEVNCSAEKLFKMNMAKQPNIPNICFNMCRVEAHQGDWERVGSTRRWDYNIDGKSQYLIERIEINDEKNKIIHRRAIDGDIMKNQYKTFASTLCVIPKGNSCCVVKISLEYEKMNEDAPEPHQLLQFGLVIFKDLASHLSNVN Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo25738.1 vs. NCBI nr
Match: gi|902232445|gb|KNA22635.1| (hypothetical protein SOVF_032630 [Spinacia oleracea]) HSP 1 Score: 279.3 bits (713), Expect = 4.200e-72 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
BLAST of Spo25738.1 vs. NCBI nr
Match: gi|731344155|ref|XP_010683260.1| (PREDICTED: MLP-like protein 28 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 240.4 bits (612), Expect = 2.100e-60 Identity = 115/152 (75.66%), Postives = 132/152 (86.84%), Query Frame = 1
BLAST of Spo25738.1 vs. NCBI nr
Match: gi|731344153|ref|XP_010683259.1| (PREDICTED: MLP-like protein 34 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 177.6 bits (449), Expect = 1.700e-41 Identity = 84/154 (54.55%), Postives = 112/154 (72.73%), Query Frame = 1
BLAST of Spo25738.1 vs. NCBI nr
Match: gi|731344151|ref|XP_010683257.1| (PREDICTED: MLP-like protein 34 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 168.7 bits (426), Expect = 7.900e-39 Identity = 85/153 (55.56%), Postives = 111/153 (72.55%), Query Frame = 1
BLAST of Spo25738.1 vs. NCBI nr
Match: gi|902232446|gb|KNA22636.1| (hypothetical protein SOVF_032640 [Spinacia oleracea]) HSP 1 Score: 163.7 bits (413), Expect = 2.500e-37 Identity = 81/151 (53.64%), Postives = 112/151 (74.17%), Query Frame = 1
BLAST of Spo25738.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSY5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_032630 PE=4 SV=1) HSP 1 Score: 279.3 bits (713), Expect = 2.900e-72 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
BLAST of Spo25738.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C044_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154630 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 1.500e-60 Identity = 115/152 (75.66%), Postives = 132/152 (86.84%), Query Frame = 1
BLAST of Spo25738.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4J1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154620 PE=4 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 1.200e-41 Identity = 84/154 (54.55%), Postives = 112/154 (72.73%), Query Frame = 1
BLAST of Spo25738.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSY0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_032640 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 1.800e-37 Identity = 81/151 (53.64%), Postives = 112/151 (74.17%), Query Frame = 1
BLAST of Spo25738.1 vs. UniProtKB/TrEMBL
Match: A5AKK0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g05120 PE=3 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 9.800e-28 Identity = 63/152 (41.45%), Postives = 96/152 (63.16%), Query Frame = 1
BLAST of Spo25738.1 vs. ExPASy Swiss-Prot
Match: MLP34_ARATH (MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34 PE=2 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 4.400e-21 Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1
BLAST of Spo25738.1 vs. ExPASy Swiss-Prot
Match: MLP28_ARATH (MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 3.100e-19 Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 1
BLAST of Spo25738.1 vs. ExPASy Swiss-Prot
Match: MLP43_ARATH (MLP-like protein 43 OS=Arabidopsis thaliana GN=MLP43 PE=1 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.500e-18 Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = 1
BLAST of Spo25738.1 vs. ExPASy Swiss-Prot
Match: ML146_PAPSO (Major latex protein 146 OS=Papaver somniferum GN=MLP146 PE=2 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 4.500e-18 Identity = 56/146 (38.36%), Postives = 85/146 (58.22%), Query Frame = 1
BLAST of Spo25738.1 vs. ExPASy Swiss-Prot
Match: MLP31_ARATH (MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=2 SV=2) HSP 1 Score: 88.2 bits (217), Expect = 8.500e-17 Identity = 51/148 (34.46%), Postives = 80/148 (54.05%), Query Frame = 1
BLAST of Spo25738.1 vs. TAIR (Arabidopsis)
Match: AT1G70850.1 (MLP-like protein 34) HSP 1 Score: 102.4 bits (254), Expect = 2.500e-22 Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1
BLAST of Spo25738.1 vs. TAIR (Arabidopsis)
Match: AT1G70830.1 (MLP-like protein 28) HSP 1 Score: 96.3 bits (238), Expect = 1.800e-20 Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 1
BLAST of Spo25738.1 vs. TAIR (Arabidopsis)
Match: AT1G14930.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) HSP 1 Score: 94.4 bits (233), Expect = 6.700e-20 Identity = 52/150 (34.67%), Postives = 85/150 (56.67%), Query Frame = 1
BLAST of Spo25738.1 vs. TAIR (Arabidopsis)
Match: AT1G70890.1 (MLP-like protein 43) HSP 1 Score: 94.0 bits (232), Expect = 8.700e-20 Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = 1
BLAST of Spo25738.1 vs. TAIR (Arabidopsis)
Match: AT5G28010.1 (Polyketide cyclase/dehydrase and lipid transport superfamily protein) HSP 1 Score: 90.5 bits (223), Expect = 9.700e-19 Identity = 52/148 (35.14%), Postives = 84/148 (56.76%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25738.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25738.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25738.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25738.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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