Spo22507.1 (mRNA)

Overview
NameSpo22507.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionSmall nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)
LocationSpoScf_01311 : 141877 .. 145173 (-)
Sequence length856
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCTGATGACCTGTTTCGACAGCTCTACCTGCGATAAGGTCGAGAATGAAAACAGAAGGTGTTCCAAAATTCAAACAAAGGACCTTCAATTTCCCTCCGCTGGTATTTCCCCACTCTCTCTCTCTTTTCTGCAGGTACTTCCTCAACTTTGCGCTTGTTTGTTTGTTGATTATTATGATATTTCAAAGTATCTTTTATGTATATTGGGATCTCATGCTTCTATTTTAACTTTCTCTCTAGGGTTTTATTAGTATTTTCTAGGGTTTTTCTTGTTCTTTGGTGCTCCAATTGTGCACTTTGTTGGTCAAATTGTTACATTTGCTGAAGTTTTCTGCTTTTGTTCAACCTTGTAATGTCTGAACTTTTTAGATTTCACTAGAACACTGCTGATTTCTCTGGGGTATTTTATCGAGCTGGTGGGTGGTTTTTTTGTGCCTTTGTGTGGCTAAGTTTTGACTTGTTTCTTAACAGATCAATCAGATCCTCTCTTCCTAAATGTGTTTTAGTTCTAACTTATTAATGTTACTCATAGCTAATTGGTGGTAGATTGAAAGTTCGAGACTAGGATATATAGATTGCAAATTAAATTAATGCGGTTTCCGTTCATGAATTCTCAATTGACTGATAAATTCTTTGTAAGGATAGTCCAAATTTCTTTGACCAATAAGCCCACAGTTTATTCAGAATTATCAACTCAATCCACGGAATTACGGTGTATTTGGTTTGCTGCCTTCTGTTGTGGATATCTCATATGGTTTATGTTGGATCATCTTTAAGTGATAAAATAATCAAAGTGATTCCCATTACTTTTATCGTTTATTAACTTTACTTCTCTAAGCTGGAAACTGAAATTGCTATTTGGCCCATTTATCCTCAGGAATTCAGGATAACACGGCGTTCTTGACTGTGAATCTAAATGGCGGTGAGCACTTACTTTTTGTCACATTTGTGATGTCTAATGCTTTAATGAATCAATTAAGTAGATTAATTGGTCTAATTTGATTGATGAAATTTTAATGTTTTTATGTCCCTGATGGCAATCATGAGGAGAAACATTTTCACTATGCTTTTACTCAATCCACTACATAGTGTGGTCGTGTGGGGAATTGGGGACGGAATATTGAAATTTCTCACTTCCATTTGGCCTTCTTATTACTCATTTTATGCTGGCTTCTTGGTCATTCATTATGATTAGCACCCCCAATTTCCCAAACATATTTGGATTACAGAATTTCTCCTGCTCAATGCAATAGTATCCTTATAATTTAAATCGAGTTAGGTGATGTCATGGTATGCTTAAATAATTGACCAACTTGCCTTCTTAACTTTATCTATTGACTTATACGGAATACATTATGCTCTTCTTCTGCCCCCTTATGACTGTGCGAGTGCCGAGTGGTATGTGTGGGATGCTGAAATGCAACTGTTGCAAGTCCTTGCAGTTTTGCGTGTAGCATTGCTTGTATGGACCTAATTGTCTGAAAACGCATACTTCTGTTTGGCCCACTTATACGGGGAAGGAAGGAGAGTGGTTACGTTGGTATTTTGTGATTAGTTTCAGTTTCAGGTGTGTTAGATTTTCCACCAGATTGTTGTCTGTTTTATATTTTGACTGTCATGATGAAACCTTTTCTTTAATAGTTGTGCTCCTTTGCAGACCGTCCCAGTTAACCCAAAACCTTTCTTGAACAATTTAACTGGAAAACCTGTCATCGTGAAGTTGAAGTGGGGAATGGAGTATAAAGGTAATTTTCCCGTGATCAGGAAATCTAATTTTGATGTTTTGAGTTTTTTTTCCTTTTTATTTCTCTTCAGTTTCATGACGTTCTCTTAAACTATCTTTCGCTTTCATTTTGGCTGGCAAGTCCAACGACTCAAAATTAGTTTTTACAGAAAAAGAAAGGGTGAAATTGCCATTTTCTTTTGTGTGAAGCATTTATTTGAGGTGTAACTGGTTAATTTCAATTGGCCACGGGGAAATATATGTGACAATGCTTTCATATGATCTTTTGCAGGTTATCTTGTGTCTGTTGATGGCTACATGAACCTACAGGTGCTTACTGAAAACCATTTTGTTTGACTGCATTTCAATGATACTTGTTCTGAACTAGTGGATGATTTTCTTTGTGTTGTATAAACTTGTATTGTTTAATATCATAGTTGCTTATCTTTTACATTGATGACTTGCCTGCAGCTGGCAAATACTGAAGAGTATATTGAAGGCCAGAAGACTGGAGATCTTGGAGAGATCCTCATCAGGTTATCAATGTTTTCTTTCAGTATCTACTGTTATCGCAAAGTGAAAATTCTTAGTACAGGATTGCACCTCTGATCTTTTTAGCAATATGGAGTACAATGTCTGCAACTTCTGAATTGTGCTTCGAAGTTAGAATACACAAACATTTTGCAACTGGTTCCATCTATTTTAATTGGTATAACCAGCTGGTGTTGGGGTGACTTGTTATACTTTTGAGTTTTGAGGGATGGGTTATATACTTATATATGTTGGGAGGTGACTTTTGCATTGTGTTGGAGTGATTTCTTATTTATTGGGAGGCTCCTTTCTGCATGCCTCGTCCACAAATCAGGTGAGATTGAGCTTATGAGATTGGTGCTGTGGTATGATGGTTTTATAGAGTAAATATTGTCTGATTTGCATTCGCTCATAACAGACGATGAACATCAATTCTTCTGATCTAGTCTTTCATGTTAACTTGTTGCTGAGTTTGTTTAGTTTACATGTTTTTTATTTCATCCCCAAGCTCCAGAATCTAACACCACCTTGTATTTCTGGGGTATTATTTCCCATAGGTGCAACAATGTCCTATATCTTCGGGGTGTTCCTGAGGACGAGGAGATAGAGGATGCTGATAAAGACTGACATACAAGCTTTTAGGATTGTTATATGTTGCAGATCTATCACAGCCAGCTCATGGGAGACGGATATATTAGGGCGTAGAAGTTACTGGCTAAGATGGGTGTGATACATGACATACAATTTACAGAGTGCGTATTATGTAAAAGAATCGCTTAATATGGCGTAACAAAATATTCGTACGAGTTTTATGGAAATGGAAATCTGGTTAGTTGGATGTTGTAGTTTATGACCTTTAAAGAGCTCCTTAATATCCCCAGAACTTGGGAGAATTCAGTCATATTGCTCCTTGCCTCCTTGGAAACCACCTAGATTTAAGAGATTCAGATAGGATACGTACTCCATTAAAAAGATTTCACATTTTCTAGAAATTACGTTCGGAATTTTTGATAAAGTACCCTTCTTCCCCCTTCTAACAAAC

mRNA sequence

GACCTGATGACCTGTTTCGACAGCTCTACCTGCGATAAGGTCGAGAATGAAAACAGAAGGTGTTCCAAAATTCAAACAAAGGACCTTCAATTTCCCTCCGCTGGTATTTCCCCACTCTCTCTCTCTTTTCTGCAGGAATTCAGGATAACACGGCGTTCTTGACTGTGAATCTAAATGGCGACCGTCCCAGTTAACCCAAAACCTTTCTTGAACAATTTAACTGGAAAACCTGTCATCGTGAAGTTGAAGTGGGGAATGGAGTATAAAGGTTATCTTGTGTCTGTTGATGGCTACATGAACCTACAGCTGGCAAATACTGAAGAGTATATTGAAGGCCAGAAGACTGGAGATCTTGGAGAGATCCTCATCAGGTGCAACAATGTCCTATATCTTCGGGGTGTTCCTGAGGACGAGGAGATAGAGGATGCTGATAAAGACTGACATACAAGCTTTTAGGATTGTTATATGTTGCAGATCTATCACAGCCAGCTCATGGGAGACGGATATATTAGGGCGTAGAAGTTACTGGCTAAGATGGGTGTGATACATGACATACAATTTACAGAGTGCGTATTATGTAAAAGAATCGCTTAATATGGCGTAACAAAATATTCGTACGAGTTTTATGGAAATGGAAATCTGGTTAGTTGGATGTTGTAGTTTATGACCTTTAAAGAGCTCCTTAATATCCCCAGAACTTGGGAGAATTCAGTCATATTGCTCCTTGCCTCCTTGGAAACCACCTAGATTTAAGAGATTCAGATAGGATACGTACTCCATTAAAAAGATTTCACATTTTCTAGAAATTACGTTCGGAATTTTTGATAAAGTACCCTTCTTCCCCCTTCTAACAAAC

Coding sequence (CDS)

ATGGCGACCGTCCCAGTTAACCCAAAACCTTTCTTGAACAATTTAACTGGAAAACCTGTCATCGTGAAGTTGAAGTGGGGAATGGAGTATAAAGGTTATCTTGTGTCTGTTGATGGCTACATGAACCTACAGCTGGCAAATACTGAAGAGTATATTGAAGGCCAGAAGACTGGAGATCTTGGAGAGATCCTCATCAGGTGCAACAATGTCCTATATCTTCGGGGTGTTCCTGAGGACGAGGAGATAGAGGATGCTGATAAAGACTGA

Protein sequence

MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGEILIRCNNVLYLRGVPEDEEIEDADKD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo22507Spo22507gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo22507.1Spo22507.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22507.1.utr5p.2Spo22507.1.utr5p.2five_prime_UTR
Spo22507.1.utr5p.1Spo22507.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22507.1.CDS.5Spo22507.1.CDS.5CDS
Spo22507.1.CDS.4Spo22507.1.CDS.4CDS
Spo22507.1.CDS.3Spo22507.1.CDS.3CDS
Spo22507.1.CDS.2Spo22507.1.CDS.2CDS
Spo22507.1.CDS.1Spo22507.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22507.1.utr3p.1Spo22507.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22507.1.exon.6Spo22507.1.exon.6exon
Spo22507.1.exon.5Spo22507.1.exon.5exon
Spo22507.1.exon.4Spo22507.1.exon.4exon
Spo22507.1.exon.3Spo22507.1.exon.3exon
Spo22507.1.exon.2Spo22507.1.exon.2exon
Spo22507.1.exon.1Spo22507.1.exon.1exon


Homology
[Close]
BLAST of Spo22507.1 vs. NCBI nr
Match: gi|902200722|gb|KNA13809.1| (hypothetical protein SOVF_113340 [Spinacia oleracea])

HSP 1 Score: 184.9 bits (468), Expect = 6.100e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL
Sbjct: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVLYLRGVPEDEEIEDADKD
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 88
[Close]
BLAST of Spo22507.1 vs. NCBI nr
Match: gi|731312030|ref|XP_010672300.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 178.7 bits (452), Expect = 4.400e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQKTGDL
Sbjct: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQKTGDL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVL+LRGVPEDEEIEDAD D
Sbjct: 61 GEILIRCNNVLHLRGVPEDEEIEDADND 88
[Close]
BLAST of Spo22507.1 vs. NCBI nr
Match: gi|731378546|ref|XP_010668211.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 177.9 bits (450), Expect = 7.500e-42
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQKTGDL
Sbjct: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQKTGDL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVL+LRGVPEDEEI+DAD+D
Sbjct: 61 GEILIRCNNVLHLRGVPEDEEIDDADQD 88
[Close]
BLAST of Spo22507.1 vs. NCBI nr
Match: gi|719966333|ref|XP_010258634.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Nelumbo nucifera])

HSP 1 Score: 173.7 bits (439), Expect = 1.400e-40
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYI+GQ TG+L
Sbjct: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDAYMNLQLANTEEYIDGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVLYLRGVPEDEEIEDA++D
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAERD 88
[Close]
BLAST of Spo22507.1 vs. NCBI nr
Match: gi|951003969|ref|XP_014507745.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Vigna radiata var. radiata])

HSP 1 Score: 172.9 bits (437), Expect = 2.400e-40
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQ TG+L
Sbjct: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVLYLRGVPEDEEIEDA +D
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAAED 88
[Close]
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4D7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_004180 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.300e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL
Sbjct: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVLYLRGVPEDEEIEDADKD
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 88
[Close]
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FYC9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g006230 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.100e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQKTGDL
Sbjct: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQKTGDL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVL+LRGVPEDEEIEDAD D
Sbjct: 61 GEILIRCNNVLHLRGVPEDEEIEDADND 88
[Close]
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DVD8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015110 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.200e-42
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQKTGDL
Sbjct: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQKTGDL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVL+LRGVPEDEEI+DAD+D
Sbjct: 61 GEILIRCNNVLHLRGVPEDEEIDDADQD 88
[Close]
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Match: A0A0S3R856_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G478900 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.700e-40
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQ TG+L
Sbjct: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVLYLRGVPEDEEIEDA +D
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAAED 88
[Close]
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Match: I3SY08_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.700e-40
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MAT+PVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVD YMNLQLANTEEYIEGQ TG+L
Sbjct: 1  MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVLYLRGVPEDEEIEDA +D
Sbjct: 61 GEILIRCNNVLYLRGVPEDEEIEDAPED 88
[Close]
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Match: RUXF_ARATH (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.100e-40
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          MAT+PVNPKPFLNNLTGK VIVKLKWGMEYKG+L SVD YMNLQL NTEEYI+GQ TG+L
Sbjct: 1  MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVLY+RGVPEDEE+EDAD+D
Sbjct: 61 GEILIRCNNVLYVRGVPEDEELEDADQD 88
[Close]
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Match: RUXF_XENLA (Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.500e-34
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1 

		  

Query: 3  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 62
          ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVDGYMN+QLANTEEYI+G  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 63 ILIRCNNVLYLRGVPEDEE 82
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80
[Close]
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Match: RUXF_HUMAN (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.500e-34
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1 

		  

Query: 3  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 62
          ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVDGYMN+QLANTEEYI+G  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 63 ILIRCNNVLYLRGVPEDEE 82
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80
[Close]
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Match: RUXF_MOUSE (Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.500e-34
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1 

		  

Query: 3  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 62
          ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVDGYMN+QLANTEEYI+G  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 63 ILIRCNNVLYLRGVPEDEE 82
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80
[Close]
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Match: RUXF_BOVIN (Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 7.500e-34
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1 

		  

Query: 3  TVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGE 62
          ++P+NPKPFLN LTGKPV+VKLKWGMEYKGYLVSVDGYMN+QLANTEEYI+G  +G LGE
Sbjct: 2  SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61

Query: 63 ILIRCNNVLYLRGVPEDEE 82
          +LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80
[Close]
BLAST of Spo22507.1 vs. TAIR (Arabidopsis)
Match: AT4G30220.2 (small nuclear ribonucleoprotein F)

HSP 1 Score: 162.2 bits (409), Expect = 1.500e-40
Identity = 74/88 (84.09%), Postives = 82/88 (93.18%), Query Frame = 1 

		  

Query: 1  MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDL 60
          + T+PVNPKPFLNNLTGK VIVKLKWGMEYKG+L SVD YMNLQL NTEEYI+GQ TG+L
Sbjct: 9  LQTIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 68

Query: 61 GEILIRCNNVLYLRGVPEDEEIEDADKD 89
          GEILIRCNNVLY+RGVPEDEE+EDAD+D
Sbjct: 69 GEILIRCNNVLYVRGVPEDEELEDADQD 96
[Close]
BLAST of Spo22507.1 vs. TAIR (Arabidopsis)
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 112.5 bits (280), Expect = 1.400e-25
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 1 

		  

Query: 28 MEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGEILIRCNNVLYLRGVPEDEEIEDADK 87
          MEYKG+L SVD YMNLQL NTEEYI+GQ TG+LGEILIRCNNVLY+RGVPEDEE+EDAD+
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQ 60

Query: 88 D 89
          D
Sbjct: 61 D 61
[Close]
BLAST of Spo22507.1 vs. TAIR (Arabidopsis)
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 77.8 bits (190), Expect = 3.700e-15
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 

		  

Query: 8  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGEILIRC 67
          P  FL ++ GKPV+VKL  G++Y+G L  +DGYMN+ +  TEEY+ GQ     G+  +R 
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNTYGDAFVRG 74

Query: 68 NNVLYL 74
          NNVLY+
Sbjct: 75 NNVLYI 80
[Close]
BLAST of Spo22507.1 vs. TAIR (Arabidopsis)
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 77.0 bits (188), Expect = 6.400e-15
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1 

		  

Query: 8  PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGEILIRC 67
          P  FL ++ G+PV+VKL  G++Y+G L  +DGYMN+ +  TEEY+ GQ     G+  IR 
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74

Query: 68 NNVLYLRGV 77
          NNVLY+  V
Sbjct: 75 NNVLYISTV 83
The following BLAST results are available for this feature:
BLAST of Spo22507.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902200722|gb|KNA13809.1|6.1e-44100.hypothetical protein SOVF_1133... [more]
gi|731312030|ref|XP_010672300.1|4.4e-4296.5PREDICTED: probable small nucl... [more]
gi|731378546|ref|XP_010668211.1|7.5e-4295.4PREDICTED: probable small nucl... [more]
gi|719966333|ref|XP_010258634.1|1.4e-4093.1PREDICTED: probable small nucl... [more]
gi|951003969|ref|XP_014507745.1|2.4e-4094.3PREDICTED: probable small nucl... [more]
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BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R4D7_SPIOL4.3e-44100.Uncharacterized protein OS=Spi... [more]
A0A0J8FYC9_BETVU3.1e-4296.5Uncharacterized protein OS=Bet... [more]
A0A0J8DVD8_BETVU5.2e-4295.4Uncharacterized protein OS=Bet... [more]
A0A0S3R856_PHAAN1.7e-4094.3Uncharacterized protein OS=Vig... [more]
I3SY08_LOTJA1.7e-4093.1Uncharacterized protein OS=Lot... [more]
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BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RUXF_ARATH3.1e-4086.3Probable small nuclear ribonuc... [more]
RUXF_XENLA7.5e-3481.0Small nuclear ribonucleoprotei... [more]
RUXF_HUMAN7.5e-3481.0Small nuclear ribonucleoprotei... [more]
RUXF_MOUSE7.5e-3481.0Small nuclear ribonucleoprotei... [more]
RUXF_BOVIN7.5e-3481.0Small nuclear ribonucleoprotei... [more]
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BLAST of Spo22507.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT4G30220.21.5e-4084.0small nuclear ribonucleoprotei... [more]
AT2G14285.11.4e-2583.6Small nuclear ribonucleoprotei... [more]
AT2G43810.13.7e-1548.4Small nuclear ribonucleoprotei... [more]
AT3G59810.16.4e-1547.8Small nuclear ribonucleoprotei... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 11..73
score: 1.2
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 10..75
score: 3.3
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 8..77
score: 4.7
IPR016487Sm-like protein Lsm6/SmFPIRPIRSF006609snRNP_SmFcoord: 1..84
score: 1.5
NoneNo IPR availableGENE3D2.30.30.100coord: 11..77
score: 2.0
NoneNo IPR availablePANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..87
score: 2.9

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006397 mRNA processing
biological_process GO:0008380 RNA splicing
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003723 RNA binding