Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTGTTACAAACACTTTTGCCATTTTCAATTGCTTTCTTCTCCTTCATTTCTCTCTCTATATATACTTTCTCTCTCTACAAAATTAAGCTTAAAATTTGGGCATGGCTAACAAGTTTTCTTGTTAGCTTGTTACTACTCAAGTATCTCCAACAATCTCTAATTTGGATAATTTATTCCAGTATTGTTCGTCTTCTTTCTTAATTTCAAATGGGTATGAGCGCGTTTCCGGACTTAACCTCGCTGTCGCTAACGAAAACCGCCTCATTCGGTGCAATGCCGGCCGCCGCCTCCGAAGAGCGGCCGCAGAACAGGGGTTTCCCCTTTCTTGGTAGTTTTACCAGTAGACAACAAGAAGTAATTGAGGGGAAAGTGTGTGATTTTGTTGAAAAACATGGGGTTTCGGTTTCGGTTTCTAATATGGATCTCAATTCCAATGCAAGTTGTAAAGATGAAAACTTTTATGAAAATAATAACAATAATGATAATAGTAATAAAGTGGGTGGTTCTAAAGAAAGTAAGGCTTGTGCAAGAGGACATTGGCGACCTGCTGAAGATAGTAAGCTCAAAGAACTTGTTGCTATTTATGGCCCTCAGAATTGGAACCTCATTGCTGAGAAATTACAAGGAAGATCAGGTAATTCTTTCTTTAATTTAATCCCCTTTTCTAACCATTTGTTATTATTCAATCTCAAACCCAAAAAAAAAATTTAAATAAAAATACAAAGAAATGAGTAGTAATGATTTATGTACGGTCATAACAAAATTAATTGTGTTTGATAAATGTTGGTATTAATTCCCTATTCCATTTATCAAAGTTTTGGTCATAATCTTTATTTTCATTTTCATTTTCATTTTCATTTTCATTTTCATTTTGTAAAAATTTAATTATCAAAGGGTTGATCATAATAATAACGTTTGTATAAAATTGACAGGTAAAAGTTGCAGGTTAAGGTGGTTCAACCAACTAGACCCAAGGATAAACAGGAGAGCATTTACAGAAGAAGAGGAGGAAAGATTAATGCAAGCACATAGAGTGTACGGAAACAAATGGGCAATGATAGCACGACTATTTCCTGGAAGAACTGATAATGCTGTTAAAAATCATTGGCATGTTATCATGGCTAGGAAGTATCGAGAACAATCTAGTGCTTATAGACGTCGCCGTAATCTTATGGCTCATCATCAACAATATCAACAACATCAACAACAACAACCGTCATCGTCGTCGAGTTTTCCTCTTAATAACCAACATGATTTTAATAATGGGAGGAGATCGCCGTCGTCGTCGTCAATGGAAGATGATGAACAACCACCAAGCTCGTATAATACTTGTTATAATGGTGGGATTAATATTAACAACAACAACAACAACAACAACAACCAATGTTCTTCTTTCCCTAACAATGGTGGTAGTAATGGGTTTTGTGGTCATCCGCAGTCTCCTTTGGATTTCTTTTCAGGTGGGTTTTCTTCTTTTTATTATGTTTAATTTCTCTTTATTCTAGTCTTATTAATTCTCTCTAGGTTAAATTTATAAGCTCAATTTTATGTGTGTTGTTTACGGAGTATTAACACATTGCCTTGCACAAACAAAAGTTTAATGTCTAATTAGACTAGAGGTTATATGGAAGTTGTATTTTCAAGTAAAAAAAGTCACAAAGGCAATATAAATTACAAATACGAGGGGGAGATTTGAACATGTGACCTACTGTATTCAAAACCCCTTAGTTTTCATCATTAGGTCAATATCTCATTGATCGAGCTTATAAGTATTTGTCCTTACAGTAGTGTCGCATGAGTAATTAAAGATCAAAAACGGGGAAATGGAAAATTAGTACTATACTATGTAATACTCATTACTCTTGTAATTAGTTAAAGACTCTAAATCCAAGCACAAAAGGAAATTAAAGAAGTACTCCGTAAGAATAATGTGTTAGGTAAATAACGGTTAATACATAGCTAACTTAACTCTTTTAACCCCTACCAATTACCAAATGTAGGCATAGACTTTTACTTGGTCAATGTTAAGGAGAATAAAATCATCATACTAAATCTTAAAAAATAACCAAGATATGTGTATACTACGTACATGTTGTTTGCTGATCTCATAACACATTTATTCTTTGCTGTTAATTTTAGAAATGAGTTGTGTATTTATATTTGGATTTAATTTGTGTTGGGCAGGTCCAAATAACAATAACATGGTGAGCATGTTCAGTCAAAGCAGCTGTTTGGATAGGCCAATACAAATGCAAATCCAACAACAAGAGTCGTACTATTACTACTACTACAACAACAATAACTCTTCTTCTCTAATTTCACTGCCCCAAACAGACCCTTATTCTCTCTCCTCCTCACAATCCCCTTCATTTCAAGCAGCAAGATCAGATGATAATCCCAATTCATCTTCACCACCTTTCATAGATTTCCTTGGTGTTGGAGCTACTTAGTTTTTATTTTAATTAAATATATGTTAACCCTTAATTTAATTATTCCTAAAAACGTGTAGAAATTAGTTAGTGATCATTCGGGTTTTAAGTTCTTCGAAAAACATCTGATAAAATTGGGACGATTGATACCGAGAGATTTGATTGGATCATGAAGGTGGTCATGAATTGTGGTGTGTGTTTTTTAGATGAACTGAAAATTTACCATAAATGGTAAAAAAAAAGAAGTGGGAGTGATTCCTTGTATCAGTTAAATATGACAGTTTTTTTTTTATAATGATATGATATGTCATGATGGAATTTCGTTAATTTAAATTAAAAATGAGTAATAAAAAGTGTGCGGACCACTAGTGGGTTTGAAGTGATATTGGGAAAAAGAAGCAATCGTTGTCTGTGTTTTGTTGTTCTACAATGTAGATGGAGTATGTGGGTGTATGGATGGATAGAAGATCGTTTTAGTAAAAGAACCAACGGTCCAAATATGGTTATCTGTTAAGTTATAATCATGATTTTGTGTTGGAAAAGTAAAACCTGATCTCAGATGTGATGCTTTATTTAATTCACTTTGGACTACTTGACAAACCCCCCAAGAGTGACTTCTCTATCTCTCTTCTAGCTACTCGGGTATATTATGGGTCGGGTTGTATTTGAGTGACGCGTTATTAGCATTTTCTTGTTATGTTAATTAATGTAATTGATTAATGTAATCCGGGCAAAGATCCGTTTAAG TCTGTTACAAACACTTTTGCCATTTTCAATTGCTTTCTTCTCCTTCATTTCTCTCTCTATATATACTTTCTCTCTCTACAAAATTAAGCTTAAAATTTGGGCATGGCTAACAAGTTTTCTTGTTAGCTTGTTACTACTCAAGTATCTCCAACAATCTCTAATTTGGATAATTTATTCCAGTATTGTTCGTCTTCTTTCTTAATTTCAAATGGGTATGAGCGCGTTTCCGGACTTAACCTCGCTGTCGCTAACGAAAACCGCCTCATTCGGTGCAATGCCGGCCGCCGCCTCCGAAGAGCGGCCGCAGAACAGGGGTTTCCCCTTTCTTGGTAGTTTTACCAGTAGACAACAAGAAGTAATTGAGGGGAAAGTGTGTGATTTTGTTGAAAAACATGGGGTTTCGGTTTCGGTTTCTAATATGGATCTCAATTCCAATGCAAGTTGTAAAGATGAAAACTTTTATGAAAATAATAACAATAATGATAATAGTAATAAAGTGGGTGGTTCTAAAGAAAGTAAGGCTTGTGCAAGAGGACATTGGCGACCTGCTGAAGATAGTAAGCTCAAAGAACTTGTTGCTATTTATGGCCCTCAGAATTGGAACCTCATTGCTGAGAAATTACAAGGAAGATCAGGTAAAAGTTGCAGGTTAAGGTGGTTCAACCAACTAGACCCAAGGATAAACAGGAGAGCATTTACAGAAGAAGAGGAGGAAAGATTAATGCAAGCACATAGAGTGTACGGAAACAAATGGGCAATGATAGCACGACTATTTCCTGGAAGAACTGATAATGCTGTTAAAAATCATTGGCATGTTATCATGGCTAGGAAGTATCGAGAACAATCTAGTGCTTATAGACGTCGCCGTAATCTTATGGCTCATCATCAACAATATCAACAACATCAACAACAACAACCGTCATCGTCGTCGAGTTTTCCTCTTAATAACCAACATGATTTTAATAATGGGAGGAGATCGCCGTCGTCGTCGTCAATGGAAGATGATGAACAACCACCAAGCTCGTATAATACTTGTTATAATGGTGGGATTAATATTAACAACAACAACAACAACAACAACAACCAATGTTCTTCTTTCCCTAACAATGGTGGTAGTAATGGGTTTTGTGGTCATCCGCAGTCTCCTTTGGATTTCTTTTCAGGTCCAAATAACAATAACATGGTGAGCATGTTCAGTCAAAGCAGCTGTTTGGATAGGCCAATACAAATGCAAATCCAACAACAAGAGTCGTACTATTACTACTACTACAACAACAATAACTCTTCTTCTCTAATTTCACTGCCCCAAACAGACCCTTATTCTCTCTCCTCCTCACAATCCCCTTCATTTCAAGCAGCAAGATCAGATGATAATCCCAATTCATCTTCACCACCTTTCATAGATTTCCTTGGTGTTGGAGCTACTTAGTTTTTATTTTAATTAAATATATGTTAACCCTTAATTTAATTATTCCTAAAAACGTGTAGAAATTAGTTAGTGATCATTCGGGTTTTAAGTTCTTCGAAAAACATCTGATAAAATTGGGACGATTGATACCGAGAGATTTGATTGGATCATGAAGGTGGTCATGAATTGTGGTGTGTGTTTTTTAGATGAACTGAAAATTTACCATAAATGGTAAAAAAAAAGAAGTGGGAGTGATTCCTTGTATCAGTTAAATATGACAGTTTTTTTTTTATAATGATATGATATGTCATGATGGAATTTCGTTAATTTAAATTAAAAATGAGTAATAAAAAGTGTGCGGACCACTAGTGGGTTTGAAGTGATATTGGGAAAAAGAAGCAATCGTTGTCTGTGTTTTGTTGTTCTACAATGTAGATGGAGTATGTGGGTGTATGGATGGATAGAAGATCGTTTTAGTAAAAGAACCAACGGTCCAAATATGGTTATCTGTTAAGTTATAATCATGATTTTGTGTTGGAAAAGTAAAACCTGATCTCAGATGTGATGCTTTATTTAATTCACTTTGGACTACTTGACAAACCCCCCAAGAGTGACTTCTCTATCTCTCTTCTAGCTACTCGGGTATATTATGGGTCGGGTTGTATTTGAGTGACGCGTTATTAGCATTTTCTTGTTATGTTAATTAATGTAATTGATTAATGTAATCCGGGCAAAGATCCGTTTAAG ATGGGTATGAGCGCGTTTCCGGACTTAACCTCGCTGTCGCTAACGAAAACCGCCTCATTCGGTGCAATGCCGGCCGCCGCCTCCGAAGAGCGGCCGCAGAACAGGGGTTTCCCCTTTCTTGGTAGTTTTACCAGTAGACAACAAGAAGTAATTGAGGGGAAAGTGTGTGATTTTGTTGAAAAACATGGGGTTTCGGTTTCGGTTTCTAATATGGATCTCAATTCCAATGCAAGTTGTAAAGATGAAAACTTTTATGAAAATAATAACAATAATGATAATAGTAATAAAGTGGGTGGTTCTAAAGAAAGTAAGGCTTGTGCAAGAGGACATTGGCGACCTGCTGAAGATAGTAAGCTCAAAGAACTTGTTGCTATTTATGGCCCTCAGAATTGGAACCTCATTGCTGAGAAATTACAAGGAAGATCAGGTAAAAGTTGCAGGTTAAGGTGGTTCAACCAACTAGACCCAAGGATAAACAGGAGAGCATTTACAGAAGAAGAGGAGGAAAGATTAATGCAAGCACATAGAGTGTACGGAAACAAATGGGCAATGATAGCACGACTATTTCCTGGAAGAACTGATAATGCTGTTAAAAATCATTGGCATGTTATCATGGCTAGGAAGTATCGAGAACAATCTAGTGCTTATAGACGTCGCCGTAATCTTATGGCTCATCATCAACAATATCAACAACATCAACAACAACAACCGTCATCGTCGTCGAGTTTTCCTCTTAATAACCAACATGATTTTAATAATGGGAGGAGATCGCCGTCGTCGTCGTCAATGGAAGATGATGAACAACCACCAAGCTCGTATAATACTTGTTATAATGGTGGGATTAATATTAACAACAACAACAACAACAACAACAACCAATGTTCTTCTTTCCCTAACAATGGTGGTAGTAATGGGTTTTGTGGTCATCCGCAGTCTCCTTTGGATTTCTTTTCAGGTCCAAATAACAATAACATGGTGAGCATGTTCAGTCAAAGCAGCTGTTTGGATAGGCCAATACAAATGCAAATCCAACAACAAGAGTCGTACTATTACTACTACTACAACAACAATAACTCTTCTTCTCTAATTTCACTGCCCCAAACAGACCCTTATTCTCTCTCCTCCTCACAATCCCCTTCATTTCAAGCAGCAAGATCAGATGATAATCCCAATTCATCTTCACCACCTTTCATAGATTTCCTTGGTGTTGGAGCTACTTAG MGMSAFPDLTSLSLTKTASFGAMPAAASEERPQNRGFPFLGSFTSRQQEVIEGKVCDFVEKHGVSVSVSNMDLNSNASCKDENFYENNNNNDNSNKVGGSKESKACARGHWRPAEDSKLKELVAIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRNLMAHHQQYQQHQQQQPSSSSSFPLNNQHDFNNGRRSPSSSSMEDDEQPPSSYNTCYNGGININNNNNNNNNQCSSFPNNGGSNGFCGHPQSPLDFFSGPNNNNMVSMFSQSSCLDRPIQMQIQQQESYYYYYYNNNNSSSLISLPQTDPYSLSSSQSPSFQAARSDDNPNSSSPPFIDFLGVGAT Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo10789.1 vs. NCBI nr
Match: gi|902204364|gb|KNA14841.1| (hypothetical protein SOVF_103700 [Spinacia oleracea]) HSP 1 Score: 794.7 bits (2051), Expect = 7.800e-227 Identity = 405/406 (99.75%), Postives = 405/406 (99.75%), Query Frame = 1
BLAST of Spo10789.1 vs. NCBI nr
Match: gi|731343970|ref|XP_010683161.1| (PREDICTED: transcription factor MYB28-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 482.6 bits (1241), Expect = 6.600e-133 Identity = 298/446 (66.82%), Postives = 318/446 (71.30%), Query Frame = 1
BLAST of Spo10789.1 vs. NCBI nr
Match: gi|870855308|gb|KMT07041.1| (hypothetical protein BVRB_6g153700 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 329.7 bits (844), Expect = 7.100e-87 Identity = 191/292 (65.41%), Postives = 211/292 (72.26%), Query Frame = 1
BLAST of Spo10789.1 vs. NCBI nr
Match: gi|1000958298|ref|XP_015576776.1| (PREDICTED: myb-like protein AA [Ricinus communis]) HSP 1 Score: 284.6 bits (727), Expect = 2.600e-73 Identity = 206/451 (45.68%), Postives = 263/451 (58.31%), Query Frame = 1
BLAST of Spo10789.1 vs. NCBI nr
Match: gi|223538339|gb|EEF39946.1| (r2r3-myb transcription factor, putative [Ricinus communis]) HSP 1 Score: 276.9 bits (707), Expect = 5.500e-71 Identity = 202/447 (45.19%), Postives = 259/447 (57.94%), Query Frame = 1
BLAST of Spo10789.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5Q7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_103700 PE=4 SV=1) HSP 1 Score: 794.7 bits (2051), Expect = 5.400e-227 Identity = 405/406 (99.75%), Postives = 405/406 (99.75%), Query Frame = 1
BLAST of Spo10789.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EV62_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153700 PE=4 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 5.000e-87 Identity = 191/292 (65.41%), Postives = 211/292 (72.26%), Query Frame = 1
BLAST of Spo10789.1 vs. UniProtKB/TrEMBL
Match: B9S8Y5_RICCO (R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0837110 PE=4 SV=1) HSP 1 Score: 276.9 bits (707), Expect = 3.800e-71 Identity = 202/447 (45.19%), Postives = 259/447 (57.94%), Query Frame = 1
BLAST of Spo10789.1 vs. UniProtKB/TrEMBL
Match: F6HPQ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02600 PE=4 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 9.400e-70 Identity = 209/470 (44.47%), Postives = 253/470 (53.83%), Query Frame = 1
BLAST of Spo10789.1 vs. UniProtKB/TrEMBL
Match: B9HI82_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s08760g PE=4 SV=1) HSP 1 Score: 268.9 bits (686), Expect = 1.000e-68 Identity = 187/419 (44.63%), Postives = 240/419 (57.28%), Query Frame = 1
BLAST of Spo10789.1 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2) HSP 1 Score: 126.7 bits (317), Expect = 5.700e-28 Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 1
BLAST of Spo10789.1 vs. ExPASy Swiss-Prot
Match: MYB_HUMAN (Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2) HSP 1 Score: 125.2 bits (313), Expect = 1.700e-27 Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 1
BLAST of Spo10789.1 vs. ExPASy Swiss-Prot
Match: MYB_CHICK (Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=1 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.700e-27 Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 1
BLAST of Spo10789.1 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 2.800e-27 Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 1
BLAST of Spo10789.1 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=1 SV=2) HSP 1 Score: 124.0 bits (310), Expect = 3.700e-27 Identity = 52/105 (49.52%), Postives = 75/105 (71.43%), Query Frame = 1
BLAST of Spo10789.1 vs. TAIR (Arabidopsis)
Match: AT1G69560.1 (myb domain protein 105) HSP 1 Score: 231.1 bits (588), Expect = 1.200e-60 Identity = 117/154 (75.97%), Postives = 130/154 (84.42%), Query Frame = 1
BLAST of Spo10789.1 vs. TAIR (Arabidopsis)
Match: AT1G26780.2 (myb domain protein 117) HSP 1 Score: 227.6 bits (579), Expect = 1.300e-59 Identity = 123/181 (67.96%), Postives = 133/181 (73.48%), Query Frame = 1
BLAST of Spo10789.1 vs. TAIR (Arabidopsis)
Match: AT3G29020.2 (myb domain protein 110) HSP 1 Score: 201.4 bits (511), Expect = 1.000e-51 Identity = 90/123 (73.17%), Postives = 110/123 (89.43%), Query Frame = 1
BLAST of Spo10789.1 vs. TAIR (Arabidopsis)
Match: AT1G73410.1 (myb domain protein 54) HSP 1 Score: 193.4 bits (490), Expect = 2.800e-49 Identity = 86/108 (79.63%), Postives = 96/108 (88.89%), Query Frame = 1
BLAST of Spo10789.1 vs. TAIR (Arabidopsis)
Match: AT5G17800.1 (myb domain protein 56) HSP 1 Score: 191.0 bits (484), Expect = 1.400e-48 Identity = 109/202 (53.96%), Postives = 133/202 (65.84%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo10789.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo10789.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo10789.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo10789.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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