Spo10018.1 (mRNA) | SpinachBase

Overview


Name	Spo10018.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RING finger protein, putative
Location	chr1 : 44497399 .. 44505672 (-)
Sequence length	1387

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCATATTTGTGTGTCGTGTAAATTTCTTTGAAATTTATTTTTGAATGGAAAAACTGTCTTTCTCTTTCCTGTCTGTTCTTTTCACACCTTCAGGTTCGCCGGTTCGCCCTATATAGTCCTGCACTCCACCCGTCTACCCATCTTCCCCTCTTTCTCCCCTCTCCTAATTTTGGGATTTTGTTCAATAATTTATTAATTCCCCCCCAAATTTGCGTATTCTTGGTGCAAATTCATCATCCAGGTACTTTCTCCCTCCTGAATCTTCAATTTTGTCTCTTTTCTCCGGAGCATTTGAGATTTAGTAGCGTTGATTTCTTGTTCGATTTTTCTCAATTTGGTTAATCGAATTGGATCAAATGTTTGAATTTTTGGTTTCTAAGGTTTTTGATTTTTATTTATGTTGATTGGGTTTGTTGAACTTCTTCCGATTGACGTTTTAGGGTTTTGAACTTCTTCCGATTCTTGTTTTTGAAACAAAGTTTTAATTTTAGGGTTGGGGTGAAAGGAGGTGAAGTGGAATTACAGTTGGTTGTTTCGGAAGCTTAAAACAATTCAATCACTGTGATTAGTTTAGAATTATACTGCCACTCCCGCTCCCTTTTTGGAGTACGGGGTCGGTTCGGTTCAAACTCTTCGCTACTGGGTGAAAGATGCCTCTTCTGATGCTGCAAAGTTTATAGTTAATCGGGGTAAAGTATTGGAAAACCATGCAATCACTGTGATTAGTTAAGAATTATGCTGCAAAGTTTATAGTTAATCGGGGTAAAGTATTGGGAATTTCATTCATTTGAATCCAGTGATGGAACGATAAACAATTTAATATTGAATTACTGTTTCTCATGATTAGGGTTCTTAGGCCACAACATTTCATAGGTGGCGGCTCATATTTTTGTAGCATGAGCACCAGGAGTGCCAGCCGCAATTCCCAAATAAGGAAAATGGTGTTAGATGTTGACCTTAATGTGCCACCCGCTAATTTTGGTGAGGTTGGCACATCGAGCCACGTGGCTCCTGTTGTTGCACCAGTTCAAGCCGAGCAGCAACGTTCCGTACCACAAGTAGTGCCGATTGATGTGGATTCACTTGATGATGATGTTGTTTTATGCTCTCCTAGGGCCTTTGCGGAGGTAGACTTTTGCTTTTTGGTTGCTAGTTATGGTTGGGGATTCTTCTTGTTAACGTCTTTAATGGTTGATTGAAATGATTTTGCTTTTTTTTCCCTTTCTCTTATTCCAGGCCAAAAATAATTCAAGAAGGAATCAGACTAGAACTAATGTCGTTGACATTGATCGGGGTAAGGAATAATCCCCTTTCTTTACTTTTTTTTTCCCAAGTGAAGCACACATTTTCAAAATTTGTTTAGATTAGAGTTTATATCTCTCTCTTGGTTATGCTTTCTTTTAAGTGTGTAATGACATGTAATGATGTACAATGATAAGACAATCAACTAAAAGCTGTAGCAGAGTTCACTACTGTTCTCTACTTCCTGTAATCTCATCCTTCATGAACTTATTAGGTTTTGCTTGTCTCCTTATTGAGTTGCCAAATACTATGCTACTATATTTAAAGTTAAAAACTTGTTGTAATTTTAAGGGAGTAACTTTCCATGGTTATCTAATGGTTGCCAGTTACGACTTTGAAGTGGATGAGCATTTATCCTTGTAGACTGTCTGTATTAATATTCAAAATGAGGGTCTTTTGGTGTTCTTTTGTTCTTACATTGGGATACGGTGATGGAGATCTTAGTTCCTGAGTGATTCTCATGCGACACAGACTTTTTCTTGAAGTCCTTAATGGTAGGTGAAAAGAATAGGGGAGAAATGAGGTGTAGAGTGTACTTCAGCACTTTTACACTTACTAGGAAGCTAGACAGAATAAGGAGATGGGAGTTTCCCTTGACAAGTAATTGAGCAAACATCTTATTTTATGTCAACTAAGTTAACTGATGCAAACCCATACTTAATTCTTTCCTTTTAACGTGTATCAGATTTAGTGATGCATGCAATCATACCAGCGTATAGTCTGGAGTAGCACAGAGGCTATTACTGAGAGTATTTGTTAAAGTAGTCTAAAGGATATAATAGTGAAGGTGAAATTCGGAGGTTTTGTGTTCTGGAAGATTCTGAATTAATTCTGGTTCACAGACTTGGGAAATGTTAAGAGTTCAGAAGAGTTTGTGGGTTTATGTTTCCCAAATGATATATATGGCAAAGCTACTCTGGTTCACGTACATTGTGTTTTTGCATATCCAAATGTGGGTTCTGTCTGCTACATGTATTATCACTTGGTGTTTGCCTTCTTTTCCTTTACCAAACAACATTGTACTTACTTTTGTTGTATGTCTCTCTTTTCACTCTATTGGAATAGAGTCTTCTACCAGAAATGCAGCTAATCAACGTAACAAGCGGCAAAGAATCTCAACAACCCTACCTATTATCAACTGTGAATCATATGTAATTTCGGTAAGGCCCAGCACTGTCACAATAATCATCATATTTTTGCGAGTCTATATGTTTTCTGTACATGATTTCCTCTACTTAGTTGGATATTCATGTTTCTCATAACTGTTTGATCAAGTAACCAAAGTTTATAAAGTGCATGGGTTTACAAAGGAGAAATCATTTTAATTTTTCGACTCTTCTCCTTAGTGAAGTGCGCATTTTTTGTGTGTTTGTTAACACAATTTCTTGGCATGAATTATCAAGCTTGGATCGGTTTAAATTATTGCTCAACTTAACATGAAACATCGGGTTAGGGTTAGCCCAACAGACCGAATTTGTTTTTTCATGCTATTTAAGGGAATTTTGCTGATTAGTTTGAATAACCATATCTGTTACTCTTGAGATATCTACTTCACTATAAGAATTTATTGTAACTTCTATCATTCTATGGAATTTAAGAAAATGTTATACACACATTTCAAATTGACATAGTGATGATTCTATGATAAGGAGCCTAAATTGGATTTTGAAGAAGTTGCTCTCCATTTTGATACATACTTGGCCTGTTTATTGTGAAGTAGCAGGCTATGATACCTTCTGTCAAGGTATTAACAAAAACGATGTTTAAGACGCTGCTGTCAGAGAGCCTTTGGAAAGGCTTTTTGGATAAGCGTATGGTATGTCATGGACAAGGGAGATAAGTGTACTTTGTGAAAATTGTTAGATGTCTGGAGCTGTGTACTCATTTTCTTCAATTGTTGTATTTCATCGTCTCTCAATTATAATGTTATTTCTGTTAGATTAGTGTTTTGGCTGCATTATTTACGAGGCTACTTTTAGGTTTTTGATTTTTAGTTGTAGGTGTAATCTATGATGTTTGGATAAGGTTTATTTGTAGGTTTTAGTAGTAATTTTAAAGTGCCTGATTGCTGTTGGTTTGATGTTTTTTTTGTTTTTTTGGGGATATCAGAGTGGTTTTCCAGCGCAAAAAAGAAGCGTGGTCCCGCAACCGCCTCCTCCTCCTCCTCCGGAGCCTACTTTCAGTTGTCCTGTTTGCATCAGTCCATTGGTTGAAGAGGTGACAACAAAGTGCGGTCATATTTTCTGCAGGGCATGCATTAAGAAAGCAATATCTTCTCAAGGGAAGTGTCCTACCTGCAGGAGAAAGGTGACATTGAAAGATACAATCAGGATCTACCTACCTACAACTAGATAAACTTGAGGTTTGTTCCTATTTCCATTAGTGGCATTACCCGTCTTTCTGCTACCTTCCCATGTTATCAATGTACGCCCTGAATGAACATTTGTTAAATGAAACTTGTATGATGATTATGGGCTCTTATCATCTCAATTTCTGTTTTTAGGTCCCACGTCTTTGATTAGGTTCTATGTTTATCCAGCCCCTTGTTTTGGTATATAAAAATTATTGATGACCAGTGTTTGGCTTTCCAGGCTAAGATTTTGGGAGCTCTAGTTGTCCCCCCCCCCCCCCCCCCCCCCCCCNCCCACCCCACCCCACCCCACCATTACCACCACCACCACAATTTGATTGGTCTATTCTCGACTGGGAAACAATCAATTCACTAACACAACAATATATATTTTTTAGTTTATTTCATGGGGCTAAGTTTTACTACATTTGAAAATTGAAATATGATGAGAAGACGTGTATTTTTGTTGTGCTTTCTCTGGCTTATTCACTGAAATGCTAGTTCTCTTTACATCAAGGGAAAACAAATCAATTCACTAACAGAGAGGTTCTTTTTAAGTTTAATTCATGGGGCGAATGTTTAATATGTGGATATACAGTCTATCCCGGCCACCCAACCCAGCAGGGGTCAGGGGTGGGCCGGTATACACTCTTGAAATTCGACTAGAAGATGTGTATTTATGTTGTGCTTTTATCTGGCTTGTTGACCAGAATGTAGTCTTGCAGTTTTAGGTATATCCGGACATGCTAGAACATGATTTGGTGTTGAACTCGCATAAAGTTGACATTGGCCAAAATATAATGCTTTTGATTATTTGGCTAGTACTGGTTCTTAGCTGACATACTGTCAATAGTCTTTGTTTTTTTAGCAAGATTTTCTTTTTTTCTGTTATGCTAATCTCGTTGTGTTCTTTTCCTTTTATGCAATGTTGTTTAAATCGCCATTTGGATTGTAGGATCCAGTTTTAGCTTTAGGGTCTTGATGGTAGGGACAATTACAATCAGTCCAGGGACCCAGGGGAGAATCTTGATCCCAGAAACATTCTGACAATCTGGCTTTTAAGTATCAAAATGAGCCTACAAGTCACCTGCCTGCTCTCAAAGCCAAGAAAGATGACACGACCCAGCTTAAAAAACGCGCATCATTTTTTTTTCTTAGGTCTGTCTCCCACTCTTGTGAACCCCTAGTTAGTCTTCTTCCCATTCAGTTGAAACTTCTGCGTTCTCCTCGTTGCTGTATAAAACAATTTAGCAACTGGAAGATCAGAACTTTCTCTTTCTATTGCTGCGTCTATTCACCTCAAGTCTTAAATCTCAATTGAAGCTGTATAAATAAATCAGTCCAGGGGGCTGGATTGGTGGAATCTCGATCCCAGACACACTCTGTAAATCTTGCTTTTACGTATCAAAATGGGCGTACAGGCCACCTGTCTGCTCTCAAAGCCGAGAAAATTGGCACGGCCAACTCAAAAAACATACAGCATAATTTTTCTCTTAGTTCTGACTCTCGCTCTCGTGAAGCCCTAGCTGGCCTCCTTTCCATTTAAGGGAAGCTTGTTCCTTCTCCTCGTTGCTGTATAAATCAATTGAGCAACTGAAAGAAGATTAAATCTTTTGCGTTCTCCTTGTTGCTTTTATTCACTTAAAGTCTCAATTGAAGCTAGATGAATTGGCAACTTACTTCCATAGATTCTCAGTTGTTGGCTTGTTGCTCTCTTCCTCTACCTCCCTCGTTATGCTTAAGTATTTGATTAATTTGGTAGTTTCAGACCTTAGAATTGTCCAACTGAAAGGCCTGCGAATTACTTTTTGTACTTTCTAAACAAGCTGTGAATAATGTTTTTGCTCAATAGTCTGCGTTACTCTGCCGAAGTGTGACTCTAGCTCTCTGCTCAACTGAAAGGCTCACCCTATATTTGTAATGTTTACAAAATATTATTTGGTAAATTAAATAATACCAATTTCTCGATACTGCTCAGCTTAAAATAATGTCAAGTTTTACACCAAAAGAAAAAAGATCTGGAGCTTTGATTATGTAAATGGTTGGAATTATGGATACAACAAAGATTAAATTGTTGTTGCAACTTCTGATTGTGAAGAATTTTTGTAGAAAACTAATGCCTTTTACTCTTTGCACTATAGTCTAAGGACTTGTAGAGTAGTCCTATCCTATCCCTCTCTTACTGATCCGAATTTCGAAGTTGGTCCGCGACAACATTGCTGTATGTTGTTAGGGGTAGGTGGTGGCTTGGCATCCTCCCATGTGAGGCTTGTTTCTGTGGACATTTGTTTTTAGTTTAATCTGCTCGCTGAGTGCTAAGTTGTTTTTAAGGAAAAGAGGCAAATTAGCCCCATAAGTCAAGTGTCATGTGCAAATTAGCCTCATAACTTCAAATGTAGCAAATTAAGACCCCTAACTATTATACTAATGTTTTTGGTAGAGGATCTGCTTTAGCTGCATATCCACATTAGCTGCTGCCTGGTTCCGGTCTCCCCTAATTCCAAAAGCAACTTAGTAGTTATCTATATTTATTTTTCCGATCAAATTTCACTGGAAATAATATTTTTTGCTGAAACAAACATTGTACCCCCCCCCCCTATACATGTACTGTATTCAGTTGTATGAATTCCTTTTGTGGTCATTATTTCAATTCACTTTTCCCCCCAATTCCTCAATAACTTCATGATTGCAAACACCAATATGGCATTAGTTTGCAAAATATAGTTCCAATAAATCCTTGTTATCTCTTCCATCTACCCAGCAGCGAAGAAAATCTTCCATCTTAAAAATTGTTTGATAGCTGGCGTGTGTTAATTCCATTCTGTAACGTGGTTAACTCTTGGTTGCTTCGATATTATCTTGGTTATCTCGTGGTTGCTTCAATATTATCTTGTGGAATTTGGCTGGAAATAAATAATTTGGAGTTACTTGAACACTGCAATAGCTGTAGGGTTAATTTGCTACAATGAAAAGTTGTCATTTGCACATGACATTATGTTTATGGGGCTGGTTTATTACATGATTTGCTTGTTGGAAGCCTTTTTTGGTTCAAGTGTTAATGAAAAAATGAAATGTTGTCAATAAAGCGGAATGGAACTGTTTCGATCTGGTTCATTGTTTGAGTTATTTGGTTTGCCTTAAATTTTGGGTAATTTTTTTTAATCCCCCATTTCCTACCCCATCTGGACTTTTGTTGCCTCCAACACAAATTATGTTGCCTTTGTCTCCCTTGTCGCCCTTGTTACAGTGCTTTCGGCAGCTCAATGGGGGTGAAGAACAGCTAAGGGTGGTCTTGAGCTGAAATCGTGGTGGTATATTGAACACTATTTAATGTTAGATTCCCTTTCTAATGTTCTGAGATGTTGTACTAAATGACACTTATAATAAGATCAGTGGCATAGATTGCAGTATTGTGAATTTGTGATGGTACTTGCCATGTTTTTTTTAATTGTGTTGGCTTGCTTGTATGTGTTGTATAAAACTGAAGTTAGCTGCTCATGATGGTGATGGGTGTGGTCTCTTTGATGGAGAATGTGATTAATCCACAGAAATAGTTCCTGATTACTGGAACCTTACTAATGAGATAATTTGTTTTTGATGTGTAGATTTGTTCTATGTCTGTTGCTGTTTAAGTAGACGTTTTAGGTACATAATATTTTTGTTTGTTTGTGGCTTTAACTCTCCAAATAGGAGAAGGTTTAATCTCTTTGGAGACCTGTTCAATTGTTTGAAGGTGGTTTTGTATTAGACAAAGTTGGCCTTGTTGAAATTATGTGATGTTTTTCTTTTCTTTTTCTTTACCCGTTTTATTCCTTATTGATGGAATATCTTGTTTCTGAATATGTAGTTTTCTAATGCACCAGCATGCTGATCTTGTTATACAATTTTTGTCCTTTCTTTCTCTTACATACTTCACTGGTTTGCTCTTTTATTTGATTTTGTTGCATAATTATGCAATGCTTCTTCTACTTGGAGAGTGCAAAGCCTTTTTGTGCGAACAATTTGAAATCGTGGCCAGCTGCTTAAACGGGGCATTCTTTTGGAACACCAAACCTTATCCCGGATCTACTTTATTAGTGATAGTTTCATTATATTTGAAAATTTGTACTAAAAGCTCTTAATTTATTTATTTATTCTGGTCTTCTGTTTCATTTTTGAACAGACTCCTATATAATATGTCAAGGAGATTGTTGATGCTTTCTGAAGCTGGTGGTAGAGGTTAAAGAAGAAGTCACCGATCTCGAGCAAGTTATTGATGAACACAGCTATTTTAAAGGAAAAGGTGGGGGTAGTATCCCCCCTATGCCAATATCCGGGAATTTGTAAAGTGATGTCCTTTATATTGGTGGAACCTTTAGAATGCCCCAATTTAGATTTCTCATTCTTACTTCTCCTTTCTTTTAGTTTCAGCCTTGGGGCTTCAAGGTTACCTCATCCCGTTGGGTCATACTCATACTATCGCTGATATTGTCGGCAATGTCTTAGATGAGCTTATCAATATGAAATGTTGAAACATTCAATTTATAATGATTAGTTGGATTGGTTTTGGTGATGAATTTTGATACCATATTGGTTGCAATATTCCGTTCTTCCATCTTGTGTTGATTTTATTCAGATCGCC

mRNA sequence

ACCATATTTGTGTGTCGTGTAAATTTCTTTGAAATTTATTTTTGAATGGAAAAACTGTCTTTCTCTTTCCTGTCTGTTCTTTTCACACCTTCAGGTTCGCCGGTTCGCCCTATATAGTCCTGCACTCCACCCGTCTACCCATCTTCCCCTCTTTCTCCCCTCTCCTAATTTTGGGATTTTGTTCAATAATTTATTAATTCCCCCCCAAATTTGCGTATTCTTGGTGCAAATTCATCATCCAGGGTTCTTAGGCCACAACATTTCATAGGTGGCGGCTCATATTTTTGTAGCATGAGCACCAGGAGTGCCAGCCGCAATTCCCAAATAAGGAAAATGGTGTTAGATGTTGACCTTAATGTGCCACCCGCTAATTTTGGTGAGGTTGGCACATCGAGCCACGTGGCTCCTGTTGTTGCACCAGTTCAAGCCGAGCAGCAACGTTCCGTACCACAAGTAGTGCCGATTGATGTGGATTCACTTGATGATGATGTTGTTTTATGCTCTCCTAGGGCCTTTGCGGAGGCCAAAAATAATTCAAGAAGGAATCAGACTAGAACTAATGTCGTTGACATTGATCGGGAGTCTTCTACCAGAAATGCAGCTAATCAACGTAACAAGCGGCAAAGAATCTCAACAACCCTACCTATTATCAACTGTGAATCATATGTAATTTCGAGTGGTTTTCCAGCGCAAAAAAGAAGCGTGGTCCCGCAACCGCCTCCTCCTCCTCCTCCGGAGCCTACTTTCAGTTGTCCTGTTTGCATCAGTCCATTGGTTGAAGAGGTGACAACAAAGTGCGGTCATATTTTCTGCAGGGCATGCATTAAGAAAGCAATATCTTCTCAAGGGAAGTGTCCTACCTGCAGGAGAAAGGTGACATTGAAAGATACAATCAGGATCTACCTACCTACAACTAGATAAACTTGAGACTCCTATATAATATGTCAAGGAGATTGTTGATGCTTTCTGAAGCTGGTGGTAGAGGTTAAAGAAGAAGTCACCGATCTCGAGCAAGTTATTGATGAACACAGCTATTTTAAAGGAAAAGGTGGGGGTAGTATCCCCCCTATGCCAATATCCGGGAATTTGTAAAGTGATGTCCTTTATATTGGTGGAACCTTTAGAATGCCCCAATTTAGATTTCTCATTCTTACTTCTCCTTTCTTTTAGTTTCAGCCTTGGGGCTTCAAGGTTACCTCATCCCGTTGGGTCATACTCATACTATCGCTGATATTGTCGGCAATGTCTTAGATGAGCTTATCAATATGAAATGTTGAAACATTCAATTTATAATGATTAGTTGGATTGGTTTTGGTGATGAATTTTGATACCATATTGGTTGCAATATTCCGTTCTTCCATCTTGTGTTGATTTTATTCAGATCGCC

Coding sequence (CDS)

ATGAGCACCAGGAGTGCCAGCCGCAATTCCCAAATAAGGAAAATGGTGTTAGATGTTGACCTTAATGTGCCACCCGCTAATTTTGGTGAGGTTGGCACATCGAGCCACGTGGCTCCTGTTGTTGCACCAGTTCAAGCCGAGCAGCAACGTTCCGTACCACAAGTAGTGCCGATTGATGTGGATTCACTTGATGATGATGTTGTTTTATGCTCTCCTAGGGCCTTTGCGGAGGCCAAAAATAATTCAAGAAGGAATCAGACTAGAACTAATGTCGTTGACATTGATCGGGAGTCTTCTACCAGAAATGCAGCTAATCAACGTAACAAGCGGCAAAGAATCTCAACAACCCTACCTATTATCAACTGTGAATCATATGTAATTTCGAGTGGTTTTCCAGCGCAAAAAAGAAGCGTGGTCCCGCAACCGCCTCCTCCTCCTCCTCCGGAGCCTACTTTCAGTTGTCCTGTTTGCATCAGTCCATTGGTTGAAGAGGTGACAACAAAGTGCGGTCATATTTTCTGCAGGGCATGCATTAAGAAAGCAATATCTTCTCAAGGGAAGTGTCCTACCTGCAGGAGAAAGGTGACATTGAAAGATACAATCAGGATCTACCTACCTACAACTAGATAA

Protein sequence

MSTRSASRNSQIRKMVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRAFAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVISSGFPAQKRSVVPQPPPPPPPEPTFSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTTR

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo10018	Spo10018	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo10018.1	Spo10018.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10018.1.utr5p.2	Spo10018.1.utr5p.2	five_prime_UTR
Spo10018.1.utr5p.1	Spo10018.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10018.1.CDS.4	Spo10018.1.CDS.4	CDS
Spo10018.1.CDS.3	Spo10018.1.CDS.3	CDS
Spo10018.1.CDS.2	Spo10018.1.CDS.2	CDS
Spo10018.1.CDS.1	Spo10018.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10018.1.utr3p.2	Spo10018.1.utr3p.2	three_prime_UTR
Spo10018.1.utr3p.1	Spo10018.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10018.1.exon.6	Spo10018.1.exon.6	exon
Spo10018.1.exon.5	Spo10018.1.exon.5	exon
Spo10018.1.exon.4	Spo10018.1.exon.4	exon
Spo10018.1.exon.3	Spo10018.1.exon.3	exon
Spo10018.1.exon.2	Spo10018.1.exon.2	exon
Spo10018.1.exon.1	Spo10018.1.exon.1	exon

Homology

[Close]

BLAST of Spo10018.1 vs. NCBI nr
Match: gi|902235577|gb|KNA23985.1| (hypothetical protein SOVF_020040 isoform A [Spinacia oleracea])

HSP 1 Score: 377.1 bits (967), Expect = 2.000e-101
Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 1


		  
Query: 15  MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA 74
           MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA
Sbjct: 1   MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA 60

Query: 75  FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVISSGFPAQ 134
           FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVISSGFPAQ
Sbjct: 61  FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVISSGFPAQ 120

Query: 135 KRSVVPQPPPPPPPEPTFSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQGKCPTCRRK 194
           KRSVVPQ PPPPPPEPTFSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQGKCPTCRRK
Sbjct: 121 KRSVVPQ-PPPPPPEPTFSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQGKCPTCRRK 180

Query: 195 VTLKDTIRIYLPTTR 210
           VTLKDTIRIYLPTTR
Sbjct: 181 VTLKDTIRIYLPTTR 194

[Close]

BLAST of Spo10018.1 vs. NCBI nr
Match: gi|902235578|gb|KNA23986.1| (hypothetical protein SOVF_020040 isoform B [Spinacia oleracea])

HSP 1 Score: 360.5 bits (924), Expect = 1.900e-96
Identity = 194/227 (85.46%), Postives = 194/227 (85.46%), Query Frame = 1


		  
Query: 15  MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA 74
           MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA
Sbjct: 1   MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA 60

Query: 75  FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVIS------ 134
           FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVIS      
Sbjct: 61  FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVISQAMIPS 120

Query: 135 --------------------------SGFPAQKRSVVPQPPPPPPPEPTFSCPVCISPLV 194
                                     SGFPAQKRSVVPQ PPPPPPEPTFSCPVCISPLV
Sbjct: 121 VKVLTKTMFKTLLSESLWKGFLDKRMSGFPAQKRSVVPQ-PPPPPPEPTFSCPVCISPLV 180

Query: 195 EEVTTKCGHIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTTR 210
           EEVTTKCGHIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTTR
Sbjct: 181 EEVTTKCGHIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTTR 226

[Close]

BLAST of Spo10018.1 vs. NCBI nr
Match: gi|731368922|ref|XP_010696393.1| (PREDICTED: uncharacterized protein LOC104908920 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 249.2 bits (635), Expect = 6.300e-63
Identity = 144/218 (66.06%), Postives = 164/218 (75.23%), Query Frame = 1


		  
Query: 4   RSASRNSQIRKMVLDVDLNVPPANF-GEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDS 63
           ++A R SQ RKM LDVDLNVP ++   EVGTSSHV P V  VQA      P VVPIDVDS
Sbjct: 12  KAAVRCSQRRKMGLDVDLNVPLSDHCDEVGTSSHV-PAVPQVQA-----APLVVPIDVDS 71

Query: 64  LDDDVVLCSPRAFAEAKNNSRRNQTRT-NVVDIDRESSTRNAANQRNKRQRISTTLPIIN 123
           L++DVVL SPRAFA AKNNSRRNQTR+ NV D++  S++R AAN R KRQR+ T  PIIN
Sbjct: 72  LEEDVVLSSPRAFAAAKNNSRRNQTRSSNVADVEILSASRPAANNRCKRQRVPTNQPIIN 131

Query: 124 CESYVI-----------SSGFPAQKRSVVPQPPPPPPPEPTFSCPVCISPLVEEVTTKCG 183
           CE YVI              FP + RSV P PPPPPPPEP F+CPVC+ PLVEE+TTKCG
Sbjct: 132 CELYVIPDRNDSDVSGTGESFPGKTRSVAP-PPPPPPPEPVFNCPVCMGPLVEEMTTKCG 191

Query: 184 HIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTT 209
           HIFC+ACIKKAISSQ +CPTCRRKVT+KDTIRIYLP +
Sbjct: 192 HIFCKACIKKAISSQHRCPTCRRKVTMKDTIRIYLPAS 222

[Close]

BLAST of Spo10018.1 vs. NCBI nr
Match: gi|731368920|ref|XP_010696392.1| (PREDICTED: uncharacterized protein LOC104908920 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 249.2 bits (635), Expect = 6.300e-63
Identity = 144/218 (66.06%), Postives = 164/218 (75.23%), Query Frame = 1


		  
Query: 4   RSASRNSQIRKMVLDVDLNVPPANF-GEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDS 63
           ++A R SQ RKM LDVDLNVP ++   EVGTSSHV P V  VQA      P VVPIDVDS
Sbjct: 31  KAAVRCSQRRKMGLDVDLNVPLSDHCDEVGTSSHV-PAVPQVQA-----APLVVPIDVDS 90

Query: 64  LDDDVVLCSPRAFAEAKNNSRRNQTRT-NVVDIDRESSTRNAANQRNKRQRISTTLPIIN 123
           L++DVVL SPRAFA AKNNSRRNQTR+ NV D++  S++R AAN R KRQR+ T  PIIN
Sbjct: 91  LEEDVVLSSPRAFAAAKNNSRRNQTRSSNVADVEILSASRPAANNRCKRQRVPTNQPIIN 150

Query: 124 CESYVI-----------SSGFPAQKRSVVPQPPPPPPPEPTFSCPVCISPLVEEVTTKCG 183
           CE YVI              FP + RSV P PPPPPPPEP F+CPVC+ PLVEE+TTKCG
Sbjct: 151 CELYVIPDRNDSDVSGTGESFPGKTRSVAP-PPPPPPPEPVFNCPVCMGPLVEEMTTKCG 210

Query: 184 HIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTT 209
           HIFC+ACIKKAISSQ +CPTCRRKVT+KDTIRIYLP +
Sbjct: 211 HIFCKACIKKAISSQHRCPTCRRKVTMKDTIRIYLPAS 241

[Close]

BLAST of Spo10018.1 vs. NCBI nr
Match: gi|747083417|ref|XP_011089074.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 [Sesamum indicum])

HSP 1 Score: 198.4 bits (503), Expect = 1.300e-47
Identity = 113/204 (55.39%), Postives = 138/204 (67.65%), Query Frame = 1


		  
Query: 13  RKMVLDVDLN-VPPANF-GEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLC 72
           RK +LDVDLN VPP     + G SS        +QA Q+       PID+++ DDDVV+ 
Sbjct: 16  RKRMLDVDLNAVPPCESRDQEGPSSRTRS--QDMQAAQEGDTAVPPPIDLEAFDDDVVIS 75

Query: 73  SPRAFAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVISSG 132
           SPRAFAEAKNNSRRN+ RT VVD++ E       + RNKR+R+ T   IINC+ Y+   G
Sbjct: 76  SPRAFAEAKNNSRRNRGRTVVVDVESEE-----RSSRNKRRRVPTNQTIINCDLYINLEG 135

Query: 133 FPAQKR-----SVVPQPPPPPPPEPTFSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQ 192
                R     S +P  PPPPP EPTFSCPVC+ PLVEE++TKCGHIFC+ACIK AI++Q
Sbjct: 136 SSNSTRKSGQSSELPTVPPPPPQEPTFSCPVCMGPLVEEMSTKCGHIFCKACIKAAIAAQ 195

Query: 193 GKCPTCRRKVTLKDTIRIYLPTTR 210
            KCPTCRR+ T+KD IRIYLP TR
Sbjct: 196 SKCPTCRRRTTVKDIIRIYLPATR 212

[Close]

BLAST of Spo10018.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWS3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_020040 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 1.400e-101
Identity = 194/195 (99.49%), Postives = 194/195 (99.49%), Query Frame = 1


		  
Query: 15  MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA 74
           MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA
Sbjct: 1   MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA 60

Query: 75  FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVISSGFPAQ 134
           FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVISSGFPAQ
Sbjct: 61  FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVISSGFPAQ 120

Query: 135 KRSVVPQPPPPPPPEPTFSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQGKCPTCRRK 194
           KRSVVPQ PPPPPPEPTFSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQGKCPTCRRK
Sbjct: 121 KRSVVPQ-PPPPPPEPTFSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQGKCPTCRRK 180

Query: 195 VTLKDTIRIYLPTTR 210
           VTLKDTIRIYLPTTR
Sbjct: 181 VTLKDTIRIYLPTTR 194

[Close]

BLAST of Spo10018.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWU8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_020040 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.300e-96
Identity = 194/227 (85.46%), Postives = 194/227 (85.46%), Query Frame = 1


		  
Query: 15  MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA 74
           MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA
Sbjct: 1   MVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDVVLCSPRA 60

Query: 75  FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVIS------ 134
           FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVIS      
Sbjct: 61  FAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVISQAMIPS 120

Query: 135 --------------------------SGFPAQKRSVVPQPPPPPPPEPTFSCPVCISPLV 194
                                     SGFPAQKRSVVPQ PPPPPPEPTFSCPVCISPLV
Sbjct: 121 VKVLTKTMFKTLLSESLWKGFLDKRMSGFPAQKRSVVPQ-PPPPPPEPTFSCPVCISPLV 180

Query: 195 EEVTTKCGHIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTTR 210
           EEVTTKCGHIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTTR
Sbjct: 181 EEVTTKCGHIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTTR 226

[Close]

BLAST of Spo10018.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B6V8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g179750 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.400e-63
Identity = 144/218 (66.06%), Postives = 164/218 (75.23%), Query Frame = 1


		  
Query: 4   RSASRNSQIRKMVLDVDLNVPPANF-GEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDS 63
           ++A R SQ RKM LDVDLNVP ++   EVGTSSHV P V  VQA      P VVPIDVDS
Sbjct: 12  KAAVRCSQRRKMGLDVDLNVPLSDHCDEVGTSSHV-PAVPQVQA-----APLVVPIDVDS 71

Query: 64  LDDDVVLCSPRAFAEAKNNSRRNQTRT-NVVDIDRESSTRNAANQRNKRQRISTTLPIIN 123
           L++DVVL SPRAFA AKNNSRRNQTR+ NV D++  S++R AAN R KRQR+ T  PIIN
Sbjct: 72  LEEDVVLSSPRAFAAAKNNSRRNQTRSSNVADVEILSASRPAANNRCKRQRVPTNQPIIN 131

Query: 124 CESYVI-----------SSGFPAQKRSVVPQPPPPPPPEPTFSCPVCISPLVEEVTTKCG 183
           CE YVI              FP + RSV P PPPPPPPEP F+CPVC+ PLVEE+TTKCG
Sbjct: 132 CELYVIPDRNDSDVSGTGESFPGKTRSVAP-PPPPPPPEPVFNCPVCMGPLVEEMTTKCG 191

Query: 184 HIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTT 209
           HIFC+ACIKKAISSQ +CPTCRRKVT+KDTIRIYLP +
Sbjct: 192 HIFCKACIKKAISSQHRCPTCRRKVTMKDTIRIYLPAS 222

[Close]

BLAST of Spo10018.1 vs. UniProtKB/TrEMBL
Match: A0A068U6S8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016402001 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.200e-46
Identity = 112/219 (51.14%), Postives = 138/219 (63.01%), Query Frame = 1


		  
Query: 4   RSASRNSQIRKMVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRS---------VPQ 63
           R+ SR+ + RK  L+VDLN  P N            +V P    Q R          +P 
Sbjct: 7   RTYSRSQRRRKTGLNVDLNAVPPNDNR--------DLVGPSARSQSRDYETSWGAAPIPP 66

Query: 64  VVPIDVDSLDDDVVLCSPRAFAEAKNNSRRNQTRTNVVDIDR-ESSTRNAANQRNKRQRI 123
             PID++++DDDV++ SPRAFAEAKNNSRRN  R  VVD+D  E S+R   N RNK +R+
Sbjct: 67  C-PIDLEAIDDDVMISSPRAFAEAKNNSRRNHERVIVVDVDSDERSSRGTQNGRNKHRRV 126

Query: 124 STTLPIINCESYVISSGFPAQKRSVV------PQPPPPPPPEPTFSCPVCISPLVEEVTT 183
           S     INC+ Y+   G     R  V      P PPPPPP EPTF+CPVC+ PLVEE++T
Sbjct: 127 SANQTFINCDLYINLEGASNSGRDNVNSMVSQPLPPPPPPKEPTFNCPVCMGPLVEEMST 186

Query: 184 KCGHIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLP 207
           KCGHIFC+ACIK AI++Q KCPTCRRKVT KD IR+YLP
Sbjct: 187 KCGHIFCKACIKSAIAAQNKCPTCRRKVTTKDIIRVYLP 216

[Close]

BLAST of Spo10018.1 vs. UniProtKB/TrEMBL
Match: V4T950_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022263mg PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.400e-45
Identity = 110/212 (51.89%), Postives = 144/212 (67.92%), Query Frame = 1


		  
Query: 1   MSTRSAS---RNSQIRKMVLDVDLNVPPANFGE-VGTSSHVAPVVAPVQAEQQRSVPQVV 60
           MST++A    R  + RK VLD  LN PP    +  GTS  +      VQA QQ       
Sbjct: 1   MSTQAARAPVRGYRRRKAVLD--LNAPPCESRDREGTSIEIRS--EEVQASQQHQSILPA 60

Query: 61  PIDVDSLDDDVVLCSPRAFAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTT 120
           PIDV+++DDDV+  SPRAFAEAKNNSRRN+ R  VVD+D   +T    + RNKR+R+ T 
Sbjct: 61  PIDVEAIDDDVIESSPRAFAEAKNNSRRNRGRAIVVDVDSGRTTGLTHSNRNKRRRVPTN 120

Query: 121 LPIINCESYVISSGFPAQKRSVVPQPPPPPPPEPTFSCPVCISPLVEEVTTKCGHIFCRA 180
            PIIN  +   +S    ++ +  P PPPPPP EPTF+CP+C+ PLVEE++TKCGHIFC+A
Sbjct: 121 PPIINYINLESTSNL-MRENAGKPPPPPPPPKEPTFTCPICMGPLVEEMSTKCGHIFCKA 180

Query: 181 CIKKAISSQGKCPTCRRKVTLKDTIRIYLPTT 209
           CIK AI++Q KCPTCR+KVT+++ IR++LP T
Sbjct: 181 CIKSAIATQNKCPTCRKKVTVRELIRVFLPAT 207

[Close]

BLAST of Spo10018.1 vs. ExPASy Swiss-Prot
Match: SM3L1_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.400e-7
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1


		  
Query: 152 FSCPVCISPLVEEVTTKCGHIFCRACIKKAIS-SQGKCPTCRRKVTLKD 200
           F CP+CISP    + T+C HIFCRACI + +  S+  CP CR  +T  D
Sbjct: 633 FDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSD 681

[Close]

BLAST of Spo10018.1 vs. ExPASy Swiss-Prot
Match: RNF4_RAT (E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.100e-6
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 1


		  
Query: 148 PEPTFSCPVCI---SPLVEE----VTTKCGHIFCRACIKKAISSQGKCPTCRRKVTLKDT 206
           P  T SCP+C+   S +V+     V+T+CGH+FC  C++ ++ +   CPTCR+K+  K  
Sbjct: 130 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 189

[Close]

BLAST of Spo10018.1 vs. ExPASy Swiss-Prot
Match: RO52_HUMAN (E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.400e-6
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1


		  
Query: 153 SCPVCISPLVEEVTTKCGHIFCRACIKKAISSQGK-CPTCRRKVTLKD 200
           +CP+C+ P VE V+ +CGH FC+ CI +     G  CP CR++  LK+
Sbjct: 15  TCPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKN 62

[Close]

BLAST of Spo10018.1 vs. ExPASy Swiss-Prot
Match: TRAF6_RAT (TNF receptor-associated factor 6 OS=Rattus norvegicus GN=Traf6 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.200e-6
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1


		  
Query: 146 PPPEPTFSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQG-KCP 190
           PP E  + CP+C+  L E V T CGH FC+ACI K+I   G KCP
Sbjct: 62  PPLESKYECPICLMALREAVQTPCGHRFCKACITKSIRDAGHKCP 106

[Close]

BLAST of Spo10018.1 vs. TAIR (Arabidopsis)
Match: AT5G48655.2 (RING/U-box superfamily protein)

HSP 1 Score: 166.0 bits (419), Expect = 2.500e-41
Identity = 93/202 (46.04%), Postives = 129/202 (63.86%), Query Frame = 1


		  
Query: 8   RNSQIRKMVLDVDLNVPPANFGEVGTSSHVAPVVAPVQAEQQRSVPQVVPIDVDSLDDDV 67
           R ++ RK V  +DLN  P +  + GTS+ V  +  P+   Q    P    IDVD+++DDV
Sbjct: 10  RGNRRRKAV--IDLNAVPVD--QEGTSASVRTLTVPITPSQ----PAPTMIDVDAIEDDV 69

Query: 68  VLCSPRAFAEAKNNSRRNQTRTNVVDIDRESSTRNAANQRNKRQRISTTLPIINCESYVI 127
           +  S  AFAEAK+ SR  + R  +VD++   +TR  AN  NKR+RI ++  +I+CE   +
Sbjct: 70  IESSASAFAEAKSKSRNARRRPLMVDVESGGTTRFPANISNKRRRIPSSESVIDCEHASV 129

Query: 128 SSGFPAQKRSVVPQPPPPPPPEPTFSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQGK 187
           +       R    + P PPP EP F+CP+C+ P  EE++TKCGHIFC+ CIK AIS QGK
Sbjct: 130 NDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGK 189

Query: 188 CPTCRRKVTLKDTIRIYLPTTR 210
           CPTCR+KVT K+ IR++LPTTR
Sbjct: 190 CPTCRKKVTAKELIRVFLPTTR 203

[Close]

BLAST of Spo10018.1 vs. TAIR (Arabidopsis)
Match: AT3G07200.1 (RING/U-box superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 4.800e-29
Identity = 73/170 (42.94%), Postives = 105/170 (61.76%), Query Frame = 1


		  
Query: 46  AEQQRSVPQVVP----IDVDSL--DDDVVLCSPRAFAEAKNNSRRNQTRTNVVDIDRESS 105
           A+Q  +VPQ+V     I+V ++  DDDVV  +  AFA+AKN SR  +  + VVD++    
Sbjct: 30  ADQAPTVPQIVATPPRINVVAIEDDDDVVESTASAFAQAKNKSRSARRGSQVVDVESA-- 89

Query: 106 TRNAANQRNKRQRISTTLPIINCESYVISSGFPAQKRSVVPQPPPPPPPEPTFSCPVCIS 165
               AN+  +R+   T++  +           P + ++V      PP  EP FSCP+C+ 
Sbjct: 90  ---GANRSTRRRSDQTSVDSVELNK-------PRKSKAVA-----PPVEEPKFSCPICLC 149

Query: 166 PLVEEVTTKCGHIFCRACIKKAISSQGKCPTCRRKVTLKDTIRIYLPTTR 210
           P  +EV+TKCGHIFC+ CIK A+S Q KCPTCR+K+T+KD IR++LPTTR
Sbjct: 150 PFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVFLPTTR 182

[Close]

BLAST of Spo10018.1 vs. TAIR (Arabidopsis)
Match: AT5G05130.1 (DNA/RNA helicase protein)

HSP 1 Score: 55.8 bits (133), Expect = 3.600e-8
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1


		  
Query: 152 FSCPVCISPLVEEVTTKCGHIFCRACIKKAIS-SQGKCPTCRRKVTLKD 200
           F CP+CISP    + T+C HIFCRACI + +  S+  CP CR  +T  D
Sbjct: 614 FDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSD 662

[Close]

BLAST of Spo10018.1 vs. TAIR (Arabidopsis)
Match: AT1G18660.4 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 52.0 bits (123), Expect = 5.200e-7
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 1


		  
Query: 152 FSCPVCISPLVEEVTTKCGHIFCRACIKKAISSQGKCPTCR 193
           F C VC+  L E  TT CGH FCR+C+ +++    KCP CR
Sbjct: 194 FDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCR 234

The following BLAST results are available for this feature:

BLAST of Spo10018.1 vs. NCBI nr
BLAST of Spo10018.1 vs. UniProtKB/TrEMBL
BLAST of Spo10018.1 vs. ExPASy Swiss-Prot
BLAST of Spo10018.1 vs. TAIR (Arabidopsis)

BLAST of Spo10018.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902235577\|gb\|KNA23985.1\|	2.0e-101	99.4	hypothetical protein SOVF_0200...	[more]
gi\|902235578\|gb\|KNA23986.1\|	1.9e-96	85.4	hypothetical protein SOVF_0200...	[more]
gi\|731368922\|ref\|XP_010696393.1\|	6.3e-63	66.0	PREDICTED: uncharacterized pro...	[more]
gi\|731368920\|ref\|XP_010696392.1\|	6.3e-63	66.0	PREDICTED: uncharacterized pro...	[more]
gi\|747083417\|ref\|XP_011089074.1\|	1.3e-47	55.3	PREDICTED: E3 ubiquitin-protei...	[more]

BLAST of Spo10018.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RWS3_SPIOL	1.4e-101	99.4	Uncharacterized protein OS=Spi...	[more]
A0A0K9RWU8_SPIOL	1.3e-96	85.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8B6V8_BETVU	4.4e-63	66.0	Uncharacterized protein OS=Bet...	[more]
A0A068U6S8_COFCA	2.2e-46	51.1	Uncharacterized protein OS=Cof...	[more]
V4T950_9ROSI	1.4e-45	51.8	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo10018.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4


Match Name	E-value	Identity	Description
SM3L1_ARATH	6.4e-7	48.9	Putative SWI/SNF-related matri...	[more]
RNF4_RAT	1.1e-6	38.4	E3 ubiquitin-protein ligase RN...	[more]
RO52_HUMAN	5.4e-6	43.7	E3 ubiquitin-protein ligase TR...	[more]
TRAF6_RAT	9.2e-6	53.3	TNF receptor-associated factor...	[more]

BLAST of Spo10018.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT5G48655.2	2.5e-41	46.0	RING/U-box superfamily protein	[more]
AT3G07200.1	4.8e-29	42.9	RING/U-box superfamily protein	[more]
AT5G05130.1	3.6e-8	48.9	DNA/RNA helicase protein	[more]
AT1G18660.4	5.2e-7	48.7	zinc finger (C3HC4-type RING f...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 154..191 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 154..192 score: 13
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 140..201 score: 3.7
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 169..178 scor
None	No IPR available	PANTHER	PTHR23041	RING FINGER DOMAIN-CONTAINING	coord: 1..209 score: 4.5
None	No IPR available	PANTHER	PTHR23041:SF63	C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..209 score: 4.5
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 154..191 score: 8.3
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 153..198 score: 3.53

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding