Spo10021.1 (mRNA) | SpinachBase

Overview


Name	Spo10021.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 44520929 .. 44526671 (-)
Sequence length	372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGTTCTGTCAAAACAAAAAGGCAGGGGCATTTATGTTGCATTCTCGAGAGAAAGATGCAAGCACAGTGATGGCATTGGAGAAAGCTGGTTTGTATATTTAAGTAAGATTTGTTTAACTTTTTTTTAGCCCTTTAATTTTCTCTCATGAAAAAATGAAATCCTACTCTAATTTACAGTGAAGGTGTCGCTTCAATTGAATTTTTTTTTTTGTAATGAAAAGGTAACTGCTTCTCTAAACGTTCTGAAAAAAAATCTATATAAGGTTACATGCTATAAGCAGAATACATAGTACTATCATTAGAAATCCGTTTGAAGATAAATTTCATTCCATCGTTACCGCTTATTACAGTTTGATCTTTCACAATTCTGTTACTTCAATAATGATAATTTTGGGTTTGGATGTCCGAATTCTACGTTTCCTCTCTCAAATGGCAGTTTCAATTCATTTTTGCAAATTTTTGATTTTTGTTTAGTAATTTGAATAATTGTTTACTGTTCAATTGCAGGAATTGAATTCAACATAACTACGGCAACCACACAAAGAAATTGGGTAATTTTTTTCCTCAAAAATGATTTGTGTATTTTATTTTTGTCACGGTTGGTGTAATGATGTTTTTTGCGATTTTCTTTGTGTATCTGACAAATTAATTAAACAAGGTAAATGTACTCGTGTTTAATTGTTCTTTCTTTTTTCTCTGCTCAGTAATTTAGTCCCAATATGTATATGTATCAAATATTTCTTCTTCTCTTTCCCTTCTCAGTGTATGTTGTAGATTTGATTGAGAATTTTGATTTTGGGATGGAATTGGAAAATAAAACTTATGAAGACATTCATTTGAAGAAGATTATTTCTTTTATGATTTTTGTTGTGTTTATGGGTTTTAGATTGTATATGGCTGTAGGCAAAATTTTTTGGGTGTGTATTACTTAAAGTAAATGGTTCAAGAAATCTATGATTAATTTGAGTTCAAGGTGTTGTCTGCATTATGATTCACTCCTCCACAATATGAGTCAAAGGGTTATTTTTTTTATTATTGATATGATTCAACTACAGTACAATATTACCTAAATTATACGGTTTGGATGATTGATTTCTTAGTTGCACTATTTTATGTTGTAAATTGTCATTTTCTATTCTCTCGATCCTTGATAAGAAATGTGTTATTTACACCCAAGTAAACAAAACCTTATACGAAGTATTACTTGATAATTTAGATCCATTGTTAGTTTATTCAAGAATTGATCAAGATATTGCGTAAGGTCTTCAAATCATAGGTTAAGATACTCTAAATTTCAAGGTTCATGATGGCCTCGTGGAGTAATGATACATCACATAGCTAGAAACAATACTGAAAATAATACTAAAATACAATCGGGTTGTATGTTGAAAGTTGAAGTTTCTAGAATGGTTTAATTTGATAGGGATATTTTTTTTCCAGTACCGGTGGAGAATGCAAGATAATGGATCATATTTGCAAGTATTAAAATCATAGTCACATTCTTGATGGACAGATGTGGTACAATTATTTGAGTAACTATGATTCAAAGGACAGACATGAGGTGATTTGCTTTCAGTACTACCAAGCAGATTTTAAGGATGTTCACCCAAAAACACATCCGTCTCTTATCCTATTCAATGTCTTTTACTACTAGGTGTAATTCCTATTAAATCAGTCTTTGAGTATTAAGATTGTCTGCTCTTTTTCTTATTGTTCATACGGAGTATAATCTTACGATTCCAAGTATTTAATTTACGTATCTATCAACATCCTCTAATCATCATAGGCATGTGTATTTTATGTGAAAGAAATTGTGTGTGAAATAGTGATTGTAGAACCATTTTTATACTTTGTATACAATTTTTATACACGAAGTATTTTATTGTGAAATAGTGATTGTATTTATATTGTCTGATGTATAGCATTGAAAATACTTCGTGTGTTTTTTTTACTTGATCTCTAATATATCCAGGAATTAAACGGGAGTTATGTCCTTCATGAGAATACACATATTATAGGAGTTGTAGGAGATAAGAAATCACTCACTCCATAGTAATCAAAGCGGCAAACACGCAAATAGAAAGGAAGTGAGCTCATCCTAGCTAGACTACTGCCATGTTGTATTATTCATATTATTAATACAGAGTATTTTTTTTATATTTTTTTTTTTTTTTTTGATAAGGAAAGAAAACCCAGACAGACTACCTGACACTATCCTTTCGAATGGGTGAATTACAATGACTCCAAGGTAATGCAATACTTCTTTTAGAATAGAACTTACAATGAAACTACGTTCTAACCTCATACTACCCCAGCCCCAGTTCCAAGTAAACTTGGTGAATAGACTTCAGAGATAGACGATTAGTCAAAGATAGAGTATTTTTTTTATATGTTATCAGGTTCTTTCAATATCTTTTTTATATGTTAATACAGAGTATCTACAACCTTTTAAAAGTGAGAACCTTAGTTTAACCATTCATGCAATAGTATTATCTCTAAAAAGCCCTTCGTATGACCTACTTCTGTGTTCCTTACTCTCTCCCTTGCTTCTCCTTCACCTCCATACTCTGCTCTCAAAATCCGCCCTCCTTTTCATCCTCTCTTTGTTTTGCTATTGTCATCTAGGGTTTGTTATCGGGTTTGCCTTTCTTTCTCCCTCGCCTCTCATTCACCTCCAGCCTTTTCTCTGCAGATCTGCTGTCCATGGAGGCGCGGCCTTCTTCTTCGTTGTCGACATCTTCTGTTTTTGCTCGGTGGAAACCTACCGGAGATGTGGACCCAATGCATTGGGTCGCGTGCGTTGCGTTAGGAGTCTCCCAGAAATCAGATCTCGGGAGCGTGCCTGGGAGATTTCCTACTGTTGTTTTTAGGGAACTTTTTTTTTTCCGGAATCGGTTTGGTATCTGGGCCTTGGTGCGTTTCTCTTCCGTCCTTTATGTGGTTTACTGTTTATTTATCATCTGCAATTGTGGTTTACCCTGGGTTCGTTTATTGCTTGAACATGTTTTCTTGTTTCTTTTGTCTTAACATTGGCCCAAATTGTTCCAGATCTCTATGCATACGATGCCGTTTTGTTTATTTTATTTTATTTAGTGGGTATTGATTGTTTGGATCTGGTCGGGTTTGTTGTTATTGAGCTGGGTTGTTTTTATTATGATTTTTCGGGGTAGAGTTTGGAGCTTTTTGTGTTTTAAATGGTGTAATTTTATGCTTTTGATCTTATTGTCACAATGTCTGTGCTTGTGGTTGTGTGGAAGAATTTAGATTTTTGTTTTGGGAGGTTGATTTAGTGGATTCAATTAACCCGAAAAGTTCGAGAGGATTGGCTTCTCCTTTCTCCCGCCCGCCCGCCTTCCAATTCCTCTCTCCTTTCAATATCGCCGACGCCATTTTTGAAACCTTTAATTTCCCAGATCTCAATTCTCCTCGATTTCATCCTAATATGGAGAGATCTGGTGAATTTTCGATCAATTAAAAATATTCCCAAAAAAAGATGATTACGGTTCCATAATTCACTGCATTAACATCCTACTTAAACTATGGATTATTATTCGCTTATGGAAAAAATTGTGATTTTCCCGTAGTATCATTGATAGGTTGTTTCCTAGCAGTGTTAAGGTTGATTTCTCCTTACATTTTCAAAATTTTAATATCCAGCTATTAATGTTCGAATTCTATTTCTAATTGTGTTATTTTTTAAAATAAAAGTTAGGTTCTGCGCCGATGAGTTTGTTTGATGACGATTCTATATTCGCCGTCTTTATAATCGCATTTAGGTAATTTGATGCTTATAATTGCACTAATTTCCCATCATTGATGTACAGTTAGGTAGTCAAAGTGGGAAAGTTTTGTTGAATTAGTTGATTTTGAGAATAGTGAAAATTATTCACAAGAATCACAACAATCAGAAGAAGAAGGATCAAGTTTCGTTCTTCAATTGAATTTTAGTCTTATGGTTTAGATTTTAGTTAATTAGCGACTGAAACTTTGCAATGACTCTTGGATTGCTTTAAAAAATTATCCGGAAATGGGGTGATGTTGCTATAACTCGTGATTTGGCTATGATGAGATAAGCAGCTTCTCATTAATCAAATTATCAATGATGTTTAATTTCTTACAGGAATGACTAAATTGATCTGTAGTTGTAGGGTTACAGATCAAAGACATGTATGCAAACATCATAGGGCTTGTCGATTAATTATGCTTCGCTCTTCCTTTATATTTTGATTAAGATTTTTCTTCCTTTTCATCTTGTAATTTTCGTTTCCTTTTAAAGTCACAGTTTTATGCCCAGAGTATTATGGAGTATTTGTTTATGGATTTCGATGTCATGTTGTCCTTACTTTTCTTATTTATAATCTCTTATGGTTCACTCTGGACTTTGTTCACCAGGTCATTCCTGAAATGGTGAGTGTTTGAGTAGAACCAAATCTTCATATATCGAGCTCTTATTGATGGTTCTGCAAGAGCTGGCCAGGTAGCTAAAGCCTTTGGTCTTTATGGGATTTAAGGTCTAAGGTATGGAGTTATTGTATATCTAGAGATTAATTGGCTTGATATCTAGACTACCTGCTCAGTAACTCTAAAAGCCAAATGAAGCATACCTATATTGCAGTAGAATGTGAAGCCAGATCGAGTTGTGTTCAATGCACTTATCACCGCTTGTGGCCAATCTGGAGCAGCAAAACGCCCCTTTGTATACTCCAGCAATCTCCTGTTTCTTTTTTTTCTTTTTACCAGGAAAATGCAATAATATTATTGTTTACTACTACCATTCTGAGCTTCTTTTTCCTTACATTTTATTTTTAAAAATTTATTTGGGTTGTTGAGGGTCATTTAATGTCTGGAGGAGAATCATGTCCATGGCTCAAGCTTCAGGGTGAGAAATACTAGGGACAGTATGCGAGCTTGAGGTGAGAGTTTTGCCCATGGCTCAAATCCTCTCTATTTTCAAGATTACAGAGTTATATGTGAATATGTGCTCTTCCTTTTTTTCTTAACTTGTCTATCCTACTATTTTCTTAATCTTCTTGTCCCCTTCTTATAATTATTATTTTTTAATGCTTAATAATTTTGTATGTGATTGTGTTGATTGCAGTTCATAATTTAGCAGATTTTTGGTTGACAATTCTTTAAGATCAGTCATCTACTTTTTATTGGGTTTTTCTTTATTCTGGCCAGTCATCTATTTTTTATTGACAAAAGTAATTGCTGATTTATATAGCCTTTTGAATTTGCCTCGAGGAGTGAATTATTTGCCTCCTTAGATGCATATATTGTTATATGTGGTTGGATACTGCCTAATAGTGCATATTCCATCTAGATCATTCTCCTTAGTGCAAGTCTACTTTTTATACACCCTCTTTCCGTAATCTCATATATTCCTGACTTGTTGCTCTCTACCTTTAGATAAAGGGTTCTATCGCATCATACTTTGGGCTAGATGGCTTTGACTAAAAGATATAATTGATCCACTTATGATGTTTATACTGAACAATAAAGAGAATATTAAACTTACTCTTGTCCAGTTTCTGTGCCTGTTCTAGAATTTGAGAACTTTTATCAAAATGGACCAGCTGTGTTAGCAAGCTAGACAACCCTGCCCTGACAGATTTTTAGTATATCTGGTCTCAGACTATAATGAAGAATTTTACTTGGGCTCTTGTCCACTTTATCGTGTTTGTAATTTGTTGGTAGTTGTACTGTGATTATGGACGAATCTATATCTTTGCCGTGA

mRNA sequence

ATGGAGGGGTTCTGTCAAAACAAAAAGGCAGGGGCATTTATGTTGCATTCTCGAGAGAAAGATGCAAGCACAGTGATGGCATTGGAGAAAGCTGATCTGCTGTCCATGGAGGCGCGGCCTTCTTCTTCGTTGTCGACATCTTCTGTTTTTGCTCGGTGGAAACCTACCGGAGATGTGGACCCAATGCATTGGGTCGCGTGCGTTGCGTTAGGAGTCTCCCAGAAATCAGATCTCGGGAGCGTGCCTGGGAGATTTCCTACTGTTTTAGGTTCTGCGCCGATGAGTTTGTTTGATGACGATTCTATATTCGCCGTCTTTATAATCGCATTTAGTTGTACTGTGATTATGGACGAATCTATATCTTTGCCGTGA

Coding sequence (CDS)

ATGGAGGGGTTCTGTCAAAACAAAAAGGCAGGGGCATTTATGTTGCATTCTCGAGAGAAAGATGCAAGCACAGTGATGGCATTGGAGAAAGCTGATCTGCTGTCCATGGAGGCGCGGCCTTCTTCTTCGTTGTCGACATCTTCTGTTTTTGCTCGGTGGAAACCTACCGGAGATGTGGACCCAATGCATTGGGTCGCGTGCGTTGCGTTAGGAGTCTCCCAGAAATCAGATCTCGGGAGCGTGCCTGGGAGATTTCCTACTGTTTTAGGTTCTGCGCCGATGAGTTTGTTTGATGACGATTCTATATTCGCCGTCTTTATAATCGCATTTAGTTGTACTGTGATTATGGACGAATCTATATCTTTGCCGTGA

Protein sequence

MEGFCQNKKAGAFMLHSREKDASTVMALEKADLLSMEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTVLGSAPMSLFDDDSIFAVFIIAFSCTVIMDESISLP

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo10021	Spo10021	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo10021.1	Spo10021.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10021.1.CDS.4	Spo10021.1.CDS.4	CDS
Spo10021.1.CDS.3	Spo10021.1.CDS.3	CDS
Spo10021.1.CDS.2	Spo10021.1.CDS.2	CDS
Spo10021.1.CDS.1	Spo10021.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10021.1.exon.4	Spo10021.1.exon.4	exon
Spo10021.1.exon.3	Spo10021.1.exon.3	exon
Spo10021.1.exon.2	Spo10021.1.exon.2	exon
Spo10021.1.exon.1	Spo10021.1.exon.1	exon

Homology

[Close]

BLAST of Spo10021.1 vs. NCBI nr
Match: gi|902228612|gb|KNA21190.1| (hypothetical protein SOVF_045780 [Spinacia oleracea])

HSP 1 Score: 113.6 bits (283), Expect = 2.400e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

		  
Query: 36 MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTVL 90
          MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTV+
Sbjct: 1  MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTVV 54

[Close]

BLAST of Spo10021.1 vs. NCBI nr
Match: gi|902228611|gb|KNA21189.1| (hypothetical protein SOVF_045770 [Spinacia oleracea])

HSP 1 Score: 66.2 bits (160), Expect = 4.400e-8
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1

		  
Query: 1  MEGFCQNKKAGAFMLHSREKDASTVMALEKADL 34
          MEGFCQNKKAGAFMLHSREKDASTVMALEKA L
Sbjct: 1  MEGFCQNKKAGAFMLHSREKDASTVMALEKAGL 33

[Close]

BLAST of Spo10021.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNV0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045780 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.700e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1

		  
Query: 36 MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTVL 90
          MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTV+
Sbjct: 1  MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTVV 54

[Close]

BLAST of Spo10021.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQM3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045770 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.100e-8
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1

		  
Query: 1  MEGFCQNKKAGAFMLHSREKDASTVMALEKADL 34
          MEGFCQNKKAGAFMLHSREKDASTVMALEKA L
Sbjct: 1  MEGFCQNKKAGAFMLHSREKDASTVMALEKAGL 33

The following BLAST results are available for this feature:

BLAST of Spo10021.1 vs. NCBI nr
BLAST of Spo10021.1 vs. UniProtKB/TrEMBL
BLAST of Spo10021.1 vs. ExPASy Swiss-Prot
BLAST of Spo10021.1 vs. TAIR (Arabidopsis)

BLAST of Spo10021.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902228612\|gb\|KNA21190.1\|	2.4e-22	98.1	hypothetical protein SOVF_0457...	[more]
gi\|902228611\|gb\|KNA21189.1\|	4.4e-8	96.9	hypothetical protein SOVF_0457...	[more]

BLAST of Spo10021.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RNV0_SPIOL	1.7e-22	98.1	Uncharacterized protein OS=Spi...	[more]
A0A0K9RQM3_SPIOL	3.1e-8	96.9	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo10021.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo10021.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description