Spo10024.1 (mRNA)

Overview
NameSpo10024.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S17-like protein
Locationchr1 : 44554474 .. 44554914 (-)
Sequence length441
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGAGTTCGCACAAAAACCGTGAAGAAGTCCTCACGCCAAGTGATTGAGAAGTACTACTCAAAGATGACATTGGATTTCCACACCAACAAGAAGGTTCTAGAAGAGGTGGCCATCATCCCATCAAAGAGGCTGCGCAACAAGATCGCAGGATTCTCCACCCATCTGATGAAACGAATCCAGAAGGGCCCAGTTCGTGGGATCTCGCTCAAGTTGCAGGAAGAAGAGAGAGAAAGACGCATGGACTTCGTACCTGATGAATCCGCCATTAAAATCGACCACATCGAGGTTGATAAGGAGACCATTGATATGCTTGCTTCTCTTGGCATGGCTGATTTGCCCGGTGTTGTTCAGATGGTTGCTGAGCCAGCTCCTGTTGTTGCTGCCGCTGGTGGTTTTGGACGTGGTGGTGGTGCTGGTGGTGCCAGGAGGTACTGA

mRNA sequence

ATGGGTCGAGTTCGCACAAAAACCGTGAAGAAGTCCTCACGCCAAGTGATTGAGAAGTACTACTCAAAGATGACATTGGATTTCCACACCAACAAGAAGGTTCTAGAAGAGGTGGCCATCATCCCATCAAAGAGGCTGCGCAACAAGATCGCAGGATTCTCCACCCATCTGATGAAACGAATCCAGAAGGGCCCAGTTCGTGGGATCTCGCTCAAGTTGCAGGAAGAAGAGAGAGAAAGACGCATGGACTTCGTACCTGATGAATCCGCCATTAAAATCGACCACATCGAGGTTGATAAGGAGACCATTGATATGCTTGCTTCTCTTGGCATGGCTGATTTGCCCGGTGTTGTTCAGATGGTTGCTGAGCCAGCTCCTGTTGTTGCTGCCGCTGGTGGTTTTGGACGTGGTGGTGGTGCTGGTGGTGCCAGGAGGTACTGA

Coding sequence (CDS)

ATGGGTCGAGTTCGCACAAAAACCGTGAAGAAGTCCTCACGCCAAGTGATTGAGAAGTACTACTCAAAGATGACATTGGATTTCCACACCAACAAGAAGGTTCTAGAAGAGGTGGCCATCATCCCATCAAAGAGGCTGCGCAACAAGATCGCAGGATTCTCCACCCATCTGATGAAACGAATCCAGAAGGGCCCAGTTCGTGGGATCTCGCTCAAGTTGCAGGAAGAAGAGAGAGAAAGACGCATGGACTTCGTACCTGATGAATCCGCCATTAAAATCGACCACATCGAGGTTGATAAGGAGACCATTGATATGCTTGCTTCTCTTGGCATGGCTGATTTGCCCGGTGTTGTTCAGATGGTTGCTGAGCCAGCTCCTGTTGTTGCTGCCGCTGGTGGTTTTGGACGTGGTGGTGGTGCTGGTGGTGCCAGGAGGTACTGA

Protein sequence

MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQMVAEPAPVVAAAGGFGRGGGAGGARRY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo10024Spo10024gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo10024.1Spo10024.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10024.1.CDS.1Spo10024.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10024.1.exon.1Spo10024.1.exon.1exon


Homology
[Close]
BLAST of Spo10024.1 vs. NCBI nr
Match: gi|902228607|gb|KNA21185.1| (hypothetical protein SOVF_045730 [Spinacia oleracea])

HSP 1 Score: 275.0 bits (702), Expect = 7.500e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
           VAEPAPVVAAAGGFGRGGGAGGARRY
Sbjct: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 146
[Close]
BLAST of Spo10024.1 vs. NCBI nr
Match: gi|902224279|gb|KNA19745.1| (hypothetical protein SOVF_058020 [Spinacia oleracea])

HSP 1 Score: 266.9 bits (681), Expect = 2.000e-68
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
           VAEPAPVVAAAGGFGR  GAGGARRY
Sbjct: 121 VAEPAPVVAAAGGFGR--GAGGARRY 144
[Close]
BLAST of Spo10024.1 vs. NCBI nr
Match: gi|698524103|ref|XP_009758854.1| (PREDICTED: 40S ribosomal protein S17-like [Nicotiana sylvestris])

HSP 1 Score: 229.6 bits (584), Expect = 3.600e-57
Identity = 124/146 (84.93%), Postives = 132/146 (90.41%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D IEVDKET+DML++LGM+DLPGVV+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
            AEP   VAA   +GRG G  G R+Y
Sbjct: 121 AAEP-QAVAALPTYGRGAGGFGGRKY 145
[Close]
BLAST of Spo10024.1 vs. NCBI nr
Match: gi|870854935|gb|KMT06683.1| (hypothetical protein BVRB_7g158470 isoform A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 228.4 bits (581), Expect = 8.000e-57
Identity = 124/146 (84.93%), Postives = 129/146 (88.36%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIK DHIEVDKETIDMLASLGMADLPG+++M
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEFSAIKTDHIEVDKETIDMLASLGMADLPGLIEM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
                      G FGR  GAGG RRY
Sbjct: 121 TPGTIAYDTVPGAFGR--GAGGPRRY 144
[Close]
BLAST of Spo10024.1 vs. NCBI nr
Match: gi|731344855|ref|XP_010683628.1| (PREDICTED: 40S ribosomal protein S17-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 228.4 bits (581), Expect = 8.000e-57
Identity = 124/146 (84.93%), Postives = 129/146 (88.36%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIK DHIEVDKETIDMLASLGMADLPG+++M
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEFSAIKTDHIEVDKETIDMLASLGMADLPGLIEM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
                      G FGR  GAGG RRY
Sbjct: 121 TPGTIAYDTVPGAFGR--GAGGPRRY 144
[Close]
BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNU5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045730 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.200e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
           VAEPAPVVAAAGGFGRGGGAGGARRY
Sbjct: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 146
[Close]
BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJS5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_058020 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.400e-68
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
           VAEPAPVVAAAGGFGR  GAGGARRY
Sbjct: 121 VAEPAPVVAAAGGFGR--GAGGARRY 144
[Close]
BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C349_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g158470 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.600e-57
Identity = 124/146 (84.93%), Postives = 129/146 (88.36%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIK DHIEVDKETIDMLASLGMADLPG+++M
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEFSAIKTDHIEVDKETIDMLASLGMADLPGLIEM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
                      G FGR  GAGG RRY
Sbjct: 121 TPGTIAYDTVPGAFGR--GAGGPRRY 144
[Close]
BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C3N8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g158470 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.600e-57
Identity = 124/146 (84.93%), Postives = 129/146 (88.36%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIK DHIEVDKETIDMLASLGMADLPG+++M
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEFSAIKTDHIEVDKETIDMLASLGMADLPGLIEM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
                      G FGR  GAGG RRY
Sbjct: 121 TPGTIAYDTVPGAFGR--GAGGPRRY 144
[Close]
BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HDM8_SOLCH (Putative 40S ribosomal protein S17-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.600e-57
Identity = 126/146 (86.30%), Postives = 133/146 (91.10%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID IEVDKET+DML+SLGM+DLPGVV+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDLIEVDKETLDMLSSLGMSDLPGVVKQ 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
            AEP   VAA   FGRG G G  R+Y
Sbjct: 121 AAEP-QAVAALPTFGRGAG-GFGRKY 144
[Close]
BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 227.3 bits (578), Expect = 1.100e-58
Identity = 124/146 (84.93%), Postives = 133/146 (91.10%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D IEVDKET+DML++LGM+DLPGVV+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
            AEP   VAA   +GRGGG G  R+Y
Sbjct: 121 AAEP-QAVAALPSYGRGGG-GFGRKY 144
[Close]
BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 211.8 bits (538), Expect = 4.900e-54
Identity = 113/139 (81.29%), Postives = 124/139 (89.21%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID ++VDKET++MLASLGM+D+ G+ Q+
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 VAEPAPVVAAAGGFGRGGG 140
             + A   A    FGR  G
Sbjct: 121 ETQQAMAPAV---FGRPAG 136
[Close]
BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 211.5 bits (537), Expect = 6.400e-54
Identity = 116/146 (79.45%), Postives = 124/146 (84.93%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D PG+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGI--S 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
             EP   +A    F   GG    RRY
Sbjct: 121 AVEPQQAMAPIAAF---GGGRAPRRY 141
[Close]
BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 208.8 bits (530), Expect = 4.100e-53
Identity = 111/135 (82.22%), Postives = 119/135 (88.15%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGI--S 120

Query: 121 VAEPAPVVAAAGGFG 136
             EP   +A    FG
Sbjct: 121 AVEPQQAMAPIAAFG 133
[Close]
BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=2 SV=3)

HSP 1 Score: 205.7 bits (522), Expect = 3.500e-52
Identity = 114/146 (78.08%), Postives = 123/146 (84.25%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGI--S 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
             +P   +A    F   GG    RRY
Sbjct: 121 AVDPQQAMAPIPAF---GGGRAPRRY 141
[Close]
BLAST of Spo10024.1 vs. TAIR (Arabidopsis)
Match: AT3G10610.1 (Ribosomal S17 family protein)

HSP 1 Score: 211.8 bits (538), Expect = 2.700e-55
Identity = 113/139 (81.29%), Postives = 124/139 (89.21%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID ++VDKET++MLASLGM+D+ G+ Q+
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 VAEPAPVVAAAGGFGRGGG 140
             + A   A    FGR  G
Sbjct: 121 ETQQAMAPAV---FGRPAG 136
[Close]
BLAST of Spo10024.1 vs. TAIR (Arabidopsis)
Match: AT5G04800.1 (Ribosomal S17 family protein)

HSP 1 Score: 211.5 bits (537), Expect = 3.600e-55
Identity = 116/146 (79.45%), Postives = 124/146 (84.93%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D PG+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGI--S 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
             EP   +A    F   GG    RRY
Sbjct: 121 AVEPQQAMAPIAAF---GGGRAPRRY 141
[Close]
BLAST of Spo10024.1 vs. TAIR (Arabidopsis)
Match: AT2G05220.1 (Ribosomal S17 family protein)

HSP 1 Score: 208.8 bits (530), Expect = 2.300e-54
Identity = 111/135 (82.22%), Postives = 119/135 (88.15%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGI--S 120

Query: 121 VAEPAPVVAAAGGFG 136
             EP   +A    FG
Sbjct: 121 AVEPQQAMAPIAAFG 133
[Close]
BLAST of Spo10024.1 vs. TAIR (Arabidopsis)
Match: AT2G04390.1 (Ribosomal S17 family protein)

HSP 1 Score: 205.7 bits (522), Expect = 2.000e-53
Identity = 114/146 (78.08%), Postives = 123/146 (84.25%), Query Frame = 1 

		  

Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGI--S 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
             +P   +A    F   GG    RRY
Sbjct: 121 AVDPQQAMAPIPAF---GGGRAPRRY 141
The following BLAST results are available for this feature:
BLAST of Spo10024.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902228607|gb|KNA21185.1|7.5e-71100.hypothetical protein SOVF_0457... [more]
gi|902224279|gb|KNA19745.1|2.0e-6898.6hypothetical protein SOVF_0580... [more]
gi|698524103|ref|XP_009758854.1|3.6e-5784.9PREDICTED: 40S ribosomal prote... [more]
gi|870854935|gb|KMT06683.1|8.0e-5784.9hypothetical protein BVRB_7g15... [more]
gi|731344855|ref|XP_010683628.1|8.0e-5784.9PREDICTED: 40S ribosomal prote... [more]
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BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RNU5_SPIOL5.2e-71100.Uncharacterized protein OS=Spi... [more]
A0A0K9RJS5_SPIOL1.4e-6898.6Uncharacterized protein OS=Spi... [more]
A0A0J8C349_BETVU5.6e-5784.9Uncharacterized protein OS=Bet... [more]
A0A0J8C3N8_BETVU5.6e-5784.9Uncharacterized protein OS=Bet... [more]
A0A0V0HDM8_SOLCH5.6e-5786.3Putative 40S ribosomal protein... [more]
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BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS17_SOLLC1.1e-5884.940S ribosomal protein S17 OS=S... [more]
RS173_ARATH4.9e-5481.240S ribosomal protein S17-3 OS... [more]
RS174_ARATH6.4e-5479.440S ribosomal protein S17-4 OS... [more]
RS172_ARATH4.1e-5382.240S ribosomal protein S17-2 OS... [more]
RS171_ARATH3.5e-5278.040S ribosomal protein S17-1 OS... [more]
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BLAST of Spo10024.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT3G10610.12.7e-5581.2Ribosomal S17 family protein[more]
AT5G04800.13.6e-5579.4Ribosomal S17 family protein[more]
AT2G05220.12.3e-5482.2Ribosomal S17 family protein[more]
AT2G04390.12.0e-5378.0Ribosomal S17 family protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001210Ribosomal protein S17eGENE3D1.10.60.20coord: 1..62
score: 4.0
IPR001210Ribosomal protein S17eHAMAPMF_00511Ribosomal_S17ecoord: 1..63
score: 20
IPR001210Ribosomal protein S17ePANTHERPTHR1073240S RIBOSOMAL PROTEIN S17coord: 1..145
score: 1.2E
IPR001210Ribosomal protein S17ePFAMPF00833Ribosomal_S17ecoord: 1..116
score: 7.9
IPR001210Ribosomal protein S17eunknownSSF116820Rps17e-likecoord: 1..62
score: 9.55
IPR018273Ribosomal protein S17e, conserved sitePROSITEPS00712RIBOSOMAL_S17Ecoord: 41..56
scor

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome