Spo09971.1 (mRNA) | SpinachBase

Overview


Name	Spo09971.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Ubiquitin-like protein ATG12
Location	chr1 : 45017257 .. 45022947 (+)
Sequence length	1608

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGTTCAAAGAGTCGGACTTTCTTCGAGAATTTCCGGCAAATTCACTGCTCCACCTTTCGACGTATTCTTGATTGAAGCTTTCCCCATGGCTTCCGAATCCCCCAGCGCTGTTCGAAAAGGTTCAAATCCTCAATTACCACTGCTAAATCCAAACTTTACTGTTGATTATATTTCCCCTTAATATTTGATCTCTCTTTAATTTCTCTCTTTTTTCGTGCTATTTTTTGGTGTATTGCAGTCGTGATTCACTTGAGGGCAACTGGTGATGCTCCCATACTCAAGCAACAAAAATTCAAGGTCTTGTTTGTTTTTCTTTTCGGGTTTATTGTTGTTGTTAAATTCCAATTTTATTGTTTCTCGTTGAATTGTTTTTTCCTTTATTGGAAGACCTAGAAATGTACTGCTAATTGAAGAAGAGGGACACCAATTTCTTTATTCTTGGAATAATTTTATTGGGAAGATAGCGAATCAAGAAAAAAACATATATTGAATGACAAATTTTTGGTATTAGACTGATCAAGAATTCACGGAGAGTGGTATACACTGGCATTCTTATACATCATCCCGAACTAGGGGCGGCATCGGTGCATCGCAAGCGTTTTACTTTTATGGTTCTTTGAAATTAGGGTTACTGACTCCGTTGTGATCAAGGTGAAGCGATCATCTTGGAAATTGAGCTGTTTGGAGGGGCTTGACAAGAATACAACTGTGATACTATATGAGAGAAAAGGCATAGTAAAATAAGTTATAGGTATATTGGCTTATATTAGGAATTAGTTCTGTGAACCGTGGTTTCAGAGCTATTTGATCATGAAATTATGGATGTTTGCTTAGAGGAACTTATGGGATGACTGACACTGTAAAAAGGAGAAGTGCAATGTAGTATGTTTAGTCGAAGAACAAGGCATATTATTTTGTTTATATGTTGTTTATGATACAATTATCCTGACGTCACTTTGTTATTCATTTCTCTCGAGAATTAACAAATGGTGAATTGCTTTTTTCATTTGATTTCGTGGTCATATTTGCTTTTAGGTTATCAGTGTAGTGGAGTGGTTGAGCTGAGGTAGACAGCTAGATTATTTTTCTACTTTGATGCCGCATATTTCTGCCTGTAACAATGTGCTAGTGTGCTACTGTGTAGTCCTGGGCATAACGACACAATAAAGTTTGATGAGAAGAGAGAACACGAGGAATTACCACACAAACAATATTGACTGAGTGCACTTTAGGAACTGTTGAGGATCTTTTCAATTTATTGTCAGTAGCACTTGCATCAAAGACAATCATTGAGAAAAATGGCATTGCTAATTTACTAGGGGTACTTAAGTTGGATCAATTAGACTGAAGGATGAAAGAGGCCATTTACTTATGCTGTCATTGAGTATCATTCATTTATCAAATATGGCACTCTGTTAAGGTTGTGGTCATTGGAAAAGGTGTTGAAGTTGTGCTATGAACTAACATAGCTGGGACAGATTTAAGAGATAGATTGAGAAAAGAAAAGGGAAGAAGATGAAGTTTGATTGATTATAAAATCAGGAAAGCAGCAATAATATATGGAAGTTACAAGCATTTGAGAGACTTGTTCTCTCCCAAAATGCAAAACAAACTAACAATAAGCTCTCAATAATATTCAGCATGATTCCCCTCTCCCTAATATTCTCTATATATAAACAAACCCAAGCATGATCTATTGAGGTTGTTGTGATCATTGGAAAAAGGTGTTGAAGTTTCTATAGGGGTCAGTGTTTTATGACTGCGGTAATACCTTTTGTAGTTTGTGTAGAGTATTGATAGCACATCTTATGTATTGGGCTGTCATATTGGGACCTTTGCTGCTACCATCGCTTTTAAGTTAGTCAATGCTAGTAACACCATCGTATTGATTAGATTGGGCAAGGCACTGCACATAACATTTTTTAGTCCGGGAAGGGCGCTGGGAGCCTGGGACTACCTCAAACCCTTTATTTTATAAAAAAAATTATACTTCGTAATTGGTCTAGAAGATGGTTAAGATATTAGTCATCAGTTTCAGGTGATGACTGAATTGTAAGTGCTTTTGTTTTTAGTTTATTTTTAATTATGCTGCAGAATGAACACTGACCAGTTTACATAGGCTCTCTACCTATTTGAATGCAAACTGTGGAAAACTGACAGGCAAAACTTATTGTGCAGATTTACATTCTCTGTAACCGAACATGAAAGGTTTAAAGATTTTAAATTTCCATGCTTTCATTCACGGTGTTATTATTTTACACTACAGAAACTGAGGATGCGTTTTAGCATTTACCATATATATTTATATATTGTGACATACGGAGTATGAAGGCTATGATAGCAGCTTTTAACGACTTCTCTTTCTCTATTTGACTTTTATGCTTTAACTTAGTACTAGTATTATTTTTTATTTAATCGTGGGTTAATGGCTTTTTTCTTTTTTATCTTCTCAGCATAGATTTTTACAGCCTGTCCCATACTGCTTATTAAAATTTCTTGTTTTTTCTTCACATAAGATGCCATCTGCATATGAGGTTTCCGTAAGACTTGTATAGTTATATGAATTTTTTATTATCCACGTTCAAAGCGCTAATGAGAAAGTATTGTCATGTCAGCAGAAAATTAAGGATGGGTTTGTTCTTGGCACCTTTATTTCTAAGAAATCATCTGTTATACTTGTATGTATTCTTTTGTGTGTGGTTTATCTGTTTTTTTAATTGATGAATGAGCAACAGTTTGCCTGATTTGTTGACTCTTCTCGTTATAGTTCTCTGTTATGCTTTCATTATCCTGAATACTGTTTATGTGTACGTCTTTCAGGTCTCTGGCACTGACAGGTTTGCTAGTGTTATTGATTTTCTACGTCGCCAACTTCATAAAGAAACCTTGGTAGGTGGCTTTTTATGTTGTTTGTTTTCCTCTTCCTAAGATAGATCGTTATATTTTTAGTTATGTGTATTTTTGCGCAGTTTGTGTACATCAACAGTGCCTTTTCTCCTAATCCAGATGAGTCGGTGATAGATCTCTACAATGTAAGTATTCTTTTTTCTTGATGGAAGCAAATGAGTTTGAGATCTTGGTAGGACTAGATATTGTTGGGATACTATTGCTATAAGTCCTCTTACACACAGAAGATCTAACAAATTTGATTTGCAATATATGTCACTAGTACTGTCATGTGTCCCCCTCCATGTTTGGGTTTGTTTTCAATTTTAGATGGTTCTTAATAGTATCAAAGGCGGAGTATTGTTTTAACAAACTACTTTATATGAAATTATGTGAACTTAGGTCCATCTAGGATTCTAGATAGCTACATGTTGTGTTCAAGATCAACAACCTTCACTAGCGTTTATATTCTTTAGAATTCCCAAAATATAGCCATATTGATGATTTTGATGAATTCTACTGTGTCAATAAGATTTGTATTGAAGAGTGTTAGTTTGATCTCATAACCTAGTATGTCAGAATTTGGTCGTCCACTTATATCCGGATTTGTAGAATCGGTTCCCTTGAAAGATGGGCCATGGCAGTAACTAGTGGGGTTAACTTCACTAGTCAATTGGTGCATGGAAAAGAACTTGATTTACCTCCAAATTGGTAGGCCTTACCATTGAATTCCTTCGCTGTGTCCTTACCTTCAGTTGTGGATAGCAGCCTATCAGGTGGCTTGAGAACCAGTAACCTGAATTATGAGGCTTAACTTAGTGCTCTTGCAGACCTTGTGTAGAGTGGATCTAGGTTAAAGCAAACAACTTTGGAGTTTTTGTTGCATGATTTTTTTATGCTTATAATTTTTTAGGAATCTAAGAGCCGTTTATAGCTAGTTGATTCCACCTCTTGCTTGATTGCATAGAGGGTTCATTTCAAATGTGAAGCTCCTTCGCAGTGTAGAGACCTCTAAAATAAGCTCCTAGAGTAGTTCTACTTCTTCCACGTACTTGTAAAACCTTTTGCACCAGTGTGAGAATCAGGTGTTCTTAGTTTTACATTGCAGCTTGTGTAAAAGAATTGCTTGCTGATTTTAGAAATAGTTTAGAAGTTTCGGGACACTGTAAAAGTTCTAGCTGAATAAGGTTAGGCATTGTCACAATTCAATGGGGTTAGATCTGCCAAATATAATGCTTAGTTTGATGACTGAAACACGGTGTTTCTTCTGTATATAACGGTGTCTTTCTCGTTCCAGACTAGCTGCAACTGCCTGAACCCGACTCACTCCCCACCAAAAAAAGAATAAAAGAAAAGAAAATAATACAGAGCCTTTTGCTGTGCTGAAACGACTTTCAATAAGCTAACTGTTGATTTCTTGTTGTAGAACTTTGGAATTGATGGTAAGCTGGTTGTCAATTATGCTTGTTCCATGGCTTGGGGCTGACTGTTGAATTGTTGATACAGCTATTTCATTTTACCGGTAAGCTTTTGAATGTTATGTAAATTCCTATGAAGAACCATGTTTGATAACAAGTTTGAAGCATACTTCCTGTATTTACAGTGATTTGTTGAATTGATCAGAAATGTACATTCGACGTGCTATATGTTCGATCTCTGAGGCCATGTATAGGGACACTGCTTCAGTTGTTGGTTGGTTGATAGATTGCGGAGTATGCTGTATGCTGACTCTCTCTCCCCTCTAAATGTGTCATTACAATAGCAAAATTTACATGATTTTAGTATTTATTTCACTTGTAAAGTTGACATGATTTCTGTTAATGTTTGTGGAAAGCAGAAGAATTTTCTTCCGGTTATGCATCCTGCTCGTCTTCCCTTTTTTTCTTGAGTCTGGTTGTTTTTCAGTTGAAAATAGTAGATCATTTCATAATTAATCCCGACTTTTCAGGCCCGTCTAAGGCCCATTTGGGCCCAATTCAGGCTGGGCTATTTTTATTTTTATATAATCAACATTTGGGTACTTGGGTTTGTTTCGTTGTACTTTGCAGTTTTGCTTCTCCTTTTTCACTAAACATTTGTTTCAATCAATATTTTATCATGATGGTTTGTCAAGCACATAATTTATCGTGTTTATGAGAATTGAAATATGCATTTTGGAGGCTTGATAAAACTTGAAATTTTGGTTCATTTTTTCTGAATCCGGATCCTCGGTCCCAAATCCGTGTCCCATCTAGTGTCCCAACTAATTCCATCGTGCACGCCCTTTAGTCATCCACCACCTTAAGAAATGTCATTTATAGCGTGATCAGTATTATTTTATTTGGGAAAATGAGGTTTATTTACCTATTGAGAATCTGAGAATGATTTTTTCATAAATCTCAAGCAAAAAGTTTGTTTTCAATAAGTAATCACCTACTGTTCATTGAAATTCCCTCACCTTAACCAACAAGTCACCAATTTTATCATAGTAAATGGAATTAATATAATTTTGTTGAGTTGGGACACTGAATAGGACATGGATTTGGGACAGAGGATCCACTAGCTTCAGCACATTTTCACTTCATTTTCCGGGTTATAGAAAACCCTTGCTTCATACGTACTTTGTATAATTCCTTTCAAGTAATCAGATGGTCTATTGTATTCGAGTTTAAATTTCGTCTACATTATTTTTCCTTTAAAATAATTTGATTTATATCCCATGCCGAATTAAGGTCGAGTTTTTGGTCCTATAATGTGAGCCAGTCCAATGACTATAGGATGCACCTGCACCTCCCAACCCCATGTCTGGTTAGCTGATCCCTGA

mRNA sequence

AATGTTCAAAGAGTCGGACTTTCTTCGAGAATTTCCGGCAAATTCACTGCTCCACCTTTCGACGTATTCTTGATTGAAGCTTTCCCCATGGCTTCCGAATCCCCCAGCGCTGTTCGAAAAGTCGTGATTCACTTGAGGGCAACTGGTGATGCTCCCATACTCAAGCAACAAAAATTCAAGGTCTCTGGCACTGACAGGTTTGCTAGTGTTATTGATTTTCTACGTCGCCAACTTCATAAAGAAACCTTGTTTGTGTACATCAACAGTGCCTTTTCTCCTAATCCAGATGAGTCGGTGATAGATCTCTACAATAACTTTGGAATTGATGGTAAGCTGGTTGTCAATTATGCTTGTTCCATGGCTTGGGGCTGACTGTTGAATTGTTGATACAGCTATTTCATTTTACCGTGATTTGTTGAATTGATCAGAAATGTACATTCGACGTGCTATATGTTCGATCTCTGAGGCCATGTATAGGGACACTGCTTCAGTTGTTGGTTGGTTGATAGATTGCGGAGTATGCTGTATGCTGACTCTCTCTCCCCTCTAAATGTGTCATTACAATAGCAAAATTTACATGATTTTAGTATTTATTTCACTTGTAAAGTTGACATGATTTCTGTTAATGTTTGTGGAAAGCAGAAGAATTTTCTTCCGGTTATGCATCCTGCTCGTCTTCCCTTTTTTTCTTGAGTCTGGTTGTTTTTCAGTTGAAAATAGTAGATCATTTCATAATTAATCCCGACTTTTCAGGCCCGTCTAAGGCCCATTTGGGCCCAATTCAGGCTGGGCTATTTTTATTTTTATATAATCAACATTTGGGTACTTGGGTTTGTTTCGTTGTACTTTGCAGTTTTGCTTCTCCTTTTTCACTAAACATTTGTTTCAATCAATATTTTATCATGATGGTTTGTCAAGCACATAATTTATCGTGTTTATGAGAATTGAAATATGCATTTTGGAGGCTTGATAAAACTTGAAATTTTGGTTCATTTTTTCTGAATCCGGATCCTCGGTCCCAAATCCGTGTCCCATCTAGTGTCCCAACTAATTCCATCGTGCACGCCCTTTAGTCATCCACCACCTTAAGAAATGTCATTTATAGCGTGATCAGTATTATTTTATTTGGGAAAATGAGGTTTATTTACCTATTGAGAATCTGAGAATGATTTTTTCATAAATCTCAAGCAAAAAGTTTGTTTTCAATAAGTAATCACCTACTGTTCATTGAAATTCCCTCACCTTAACCAACAAGTCACCAATTTTATCATAGTAAATGGAATTAATATAATTTTGTTGAGTTGGGACACTGAATAGGACATGGATTTGGGACAGAGGATCCACTAGCTTCAGCACATTTTCACTTCATTTTCCGGGTTATAGAAAACCCTTGCTTCATACGTACTTTGTATAATTCCTTTCAAGTAATCAGATGGTCTATTGTATTCGAGTTTAAATTTCGTCTACATTATTTTTCCTTTAAAATAATTTGATTTATATCCCATGCCGAATTAAGGTCGAGTTTTTGGTCCTATAATGTGAGCCAGTCCAATGACTATAGGATGCACCTGCACCTCCCAACCCCATGTCTGGTTAGCTGATCCCTGA

Coding sequence (CDS)

ATGGCTTCCGAATCCCCCAGCGCTGTTCGAAAAGTCGTGATTCACTTGAGGGCAACTGGTGATGCTCCCATACTCAAGCAACAAAAATTCAAGGTCTCTGGCACTGACAGGTTTGCTAGTGTTATTGATTTTCTACGTCGCCAACTTCATAAAGAAACCTTGTTTGTGTACATCAACAGTGCCTTTTCTCCTAATCCAGATGAGTCGGTGATAGATCTCTACAATAACTTTGGAATTGATGGTAAGCTGGTTGTCAATTATGCTTGTTCCATGGCTTGGGGCTGA

Protein sequence

MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSAFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo09971	Spo09971	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo09971.1	Spo09971.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09971.1.exon.1	Spo09971.1.exon.1	exon
Spo09971.1.exon.2	Spo09971.1.exon.2	exon
Spo09971.1.exon.3	Spo09971.1.exon.3	exon
Spo09971.1.exon.4	Spo09971.1.exon.4	exon
Spo09971.1.exon.5	Spo09971.1.exon.5	exon
Spo09971.1.exon.6	Spo09971.1.exon.6	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09971.1.utr5p.1	Spo09971.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09971.1.CDS.1	Spo09971.1.CDS.1	CDS
Spo09971.1.CDS.2	Spo09971.1.CDS.2	CDS
Spo09971.1.CDS.3	Spo09971.1.CDS.3	CDS
Spo09971.1.CDS.4	Spo09971.1.CDS.4	CDS
Spo09971.1.CDS.5	Spo09971.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09971.1.utr3p.1	Spo09971.1.utr3p.1	three_prime_UTR
Spo09971.1.utr3p.2	Spo09971.1.utr3p.2	three_prime_UTR

Homology

[Close]

BLAST of Spo09971.1 vs. NCBI nr
Match: gi|902221237|gb|KNA18840.1| (hypothetical protein SOVF_067150 [Spinacia oleracea])

HSP 1 Score: 191.8 bits (486), Expect = 5.400e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1

		  
Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS
Sbjct: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 94

[Close]

BLAST of Spo09971.1 vs. NCBI nr
Match: gi|731348093|ref|XP_010685319.1| (PREDICTED: ubiquitin-like protein ATG12 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 190.7 bits (483), Expect = 1.200e-45
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 1

		  
Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLH+ETLFVYINS
Sbjct: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHRETLFVYINS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 94

[Close]

BLAST of Spo09971.1 vs. NCBI nr
Match: gi|593266536|ref|XP_007135446.1| (hypothetical protein PHAVU_010G130300g [Phaseolus vulgaris])

HSP 1 Score: 175.3 bits (443), Expect = 5.200e-41
Identity = 81/94 (86.17%), Postives = 90/94 (95.74%), Query Frame = 1

		  
Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          M++ESPS+VRKVVIHLRATGDAPILKQ KFK++GTD+FA VIDFLRRQLH+ETLFVY+NS
Sbjct: 1  MSAESPSSVRKVVIHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRETLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDE VIDL+NNFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDELVIDLFNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Spo09971.1 vs. NCBI nr
Match: gi|1009111908|ref|XP_015865663.1| (PREDICTED: ubiquitin-like protein ATG12 [Ziziphus jujuba])

HSP 1 Score: 175.3 bits (443), Expect = 5.200e-41
Identity = 81/93 (87.10%), Postives = 89/93 (95.70%), Query Frame = 1

		  
Query: 2  ASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSA 61
          ++ESPS+VRKVV+HLRATGDAPILKQ KFK+ GTD+FA VIDFLRRQLH+ETLFVY+NSA
Sbjct: 3  STESPSSVRKVVVHLRATGDAPILKQAKFKILGTDKFAKVIDFLRRQLHRETLFVYVNSA 62

Query: 62 FSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          FSPNPDESVIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 63 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]

BLAST of Spo09971.1 vs. NCBI nr
Match: gi|1012234358|ref|XP_015939248.1| (PREDICTED: ubiquitin-like protein ATG12 [Arachis duranensis])

HSP 1 Score: 175.3 bits (443), Expect = 5.200e-41
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 1

		  
Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MA+ESPS+VRKVV+HLRATGDAPILKQ KFK++G D+FA VIDFLRRQLH+ETLFVY+NS
Sbjct: 1  MAAESPSSVRKVVVHLRATGDAPILKQSKFKIAGADKFAKVIDFLRRQLHRETLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDES+IDLY NFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESIIDLYTNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH85_SPIOL (Ubiquitin-like protein ATG12 OS=Spinacia oleracea GN=SOVF_067150 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.700e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1

		  
Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS
Sbjct: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 94

[Close]

BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUM8_BETVU (Ubiquitin-like protein ATG12 OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g170070 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.300e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 1

		  
Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLH+ETLFVYINS
Sbjct: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHRETLFVYINS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 94

[Close]

BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Match: V7AQ37_PHAVU (Ubiquitin-like protein ATG12 OS=Phaseolus vulgaris GN=PHAVU_010G130300g PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.600e-41
Identity = 81/94 (86.17%), Postives = 90/94 (95.74%), Query Frame = 1

		  
Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          M++ESPS+VRKVVIHLRATGDAPILKQ KFK++GTD+FA VIDFLRRQLH+ETLFVY+NS
Sbjct: 1  MSAESPSSVRKVVIHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRETLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDE VIDL+NNFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDELVIDLFNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Match: A0A061GCF0_THECC (Ubiquitin-like protein ATG12 (Fragment) OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.100e-41
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 1

		  
Query: 1   MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
           MA+ESP++VRKVV+HLRATGDAPILKQ KFK+ GTD+FA VIDFLRRQLH++TLFVY+NS
Sbjct: 21  MAAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNS 80

Query: 61  AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
           AFSPNPDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 81  AFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 114

[Close]

BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Match: A0A061GBK9_THECC (Ubiquitin-like protein ATG12 OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.100e-41
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 1

		  
Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MA+ESP++VRKVV+HLRATGDAPILKQ KFK+ GTD+FA VIDFLRRQLH++TLFVY+NS
Sbjct: 1  MAAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Match: ATG12_MEDTR (Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.600e-42
Identity = 79/93 (84.95%), Postives = 89/93 (95.70%), Query Frame = 1

		  
Query: 2  ASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSA 61
          A+ESP++VRKVV+HLRATGDAPILKQ KFK++GTD+FA VIDFLRRQLH+E+LFVY+NSA
Sbjct: 3  AAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVNSA 62

Query: 62 FSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          FSPNPDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 63 FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]

BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Match: AT12B_ARATH (Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.100e-42
Identity = 78/94 (82.98%), Postives = 90/94 (95.74%), Query Frame = 1

		  
Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MA+ESP++V+K+V+HLRATG APILKQ KFKVSG+D+FA+VIDFLRRQLH ++LFVY+NS
Sbjct: 1  MATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Match: AT12A_ARATH (Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana GN=ATG12A PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.000e-41
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 1

		  
Query: 3  SESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSAF 62
          S SPS+VRKVV+HLRATG APILKQ KFK+ GTD+FA VIDFLRRQLH ++LFVY+NSAF
Sbjct: 5  SSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNSAF 64

Query: 63 SPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          SPNPDESVIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 65 SPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]

BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Match: ATG12_ORYSI (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 6.800e-33
Identity = 60/85 (70.59%), Postives = 76/85 (89.41%), Query Frame = 1

		  
Query: 10 RKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSAFSPNPDES 69
          +KVV+H R+TG+AP LKQ KFK+ G ++F  +IDFLRRQ+H++T+F+Y+NSAFSPNPDE 
Sbjct: 9  KKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDEL 68

Query: 70 VIDLYNNFGIDGKLVVNYACSMAWG 95
          +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 69 IIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]

BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Match: ATG12_ORYSJ (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 6.800e-33
Identity = 60/85 (70.59%), Postives = 76/85 (89.41%), Query Frame = 1

		  
Query: 10 RKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSAFSPNPDES 69
          +KVV+H R+TG+AP LKQ KFK+ G ++F  +IDFLRRQ+H++T+F+Y+NSAFSPNPDE 
Sbjct: 9  KKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDEL 68

Query: 70 VIDLYNNFGIDGKLVVNYACSMAWG 95
          +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 69 IIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]

BLAST of Spo09971.1 vs. TAIR (Arabidopsis)
Match: AT3G13970.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 171.0 bits (432), Expect = 3.500e-43
Identity = 78/94 (82.98%), Postives = 90/94 (95.74%), Query Frame = 1

		  
Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MA+ESP++V+K+V+HLRATG APILKQ KFKVSG+D+FA+VIDFLRRQLH ++LFVY+NS
Sbjct: 1  MATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]

BLAST of Spo09971.1 vs. TAIR (Arabidopsis)
Match: AT1G54210.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 168.7 bits (426), Expect = 1.700e-42
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 1

		  
Query: 3  SESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSAF 62
          S SPS+VRKVV+HLRATG APILKQ KFK+ GTD+FA VIDFLRRQLH ++LFVY+NSAF
Sbjct: 5  SSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNSAF 64

Query: 63 SPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          SPNPDESVIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 65 SPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

The following BLAST results are available for this feature:

BLAST of Spo09971.1 vs. NCBI nr
BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
BLAST of Spo09971.1 vs. TAIR (Arabidopsis)

BLAST of Spo09971.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902221237\|gb\|KNA18840.1\|	5.4e-46	100.	hypothetical protein SOVF_0671...	[more]
gi\|731348093\|ref\|XP_010685319.1\|	1.2e-45	98.9	PREDICTED: ubiquitin-like prot...	[more]
gi\|593266536\|ref\|XP_007135446.1\|	5.2e-41	86.1	hypothetical protein PHAVU_010...	[more]
gi\|1009111908\|ref\|XP_015865663.1\|	5.2e-41	87.1	PREDICTED: ubiquitin-like prot...	[more]
gi\|1012234358\|ref\|XP_015939248.1\|	5.2e-41	85.1	PREDICTED: ubiquitin-like prot...	[more]

BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RH85_SPIOL	3.7e-46	100.	Ubiquitin-like protein ATG12 O...	[more]
A0A0J8BUM8_BETVU	8.3e-46	98.9	Ubiquitin-like protein ATG12 O...	[more]
V7AQ37_PHAVU	3.6e-41	86.1	Ubiquitin-like protein ATG12 O...	[more]
A0A061GCF0_THECC	8.1e-41	85.1	Ubiquitin-like protein ATG12 (...	[more]
A0A061GBK9_THECC	8.1e-41	85.1	Ubiquitin-like protein ATG12 O...	[more]

BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
ATG12_MEDTR	1.6e-42	84.9	Ubiquitin-like protein ATG12 O...	[more]
AT12B_ARATH	6.1e-42	82.9	Ubiquitin-like protein ATG12B ...	[more]
AT12A_ARATH	3.0e-41	84.7	Ubiquitin-like protein ATG12A ...	[more]
ATG12_ORYSI	6.8e-33	70.5	Ubiquitin-like protein ATG12 O...	[more]
ATG12_ORYSJ	6.8e-33	70.5	Ubiquitin-like protein ATG12 O...	[more]

BLAST of Spo09971.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT3G13970.1	3.5e-43	82.9	Ubiquitin-like superfamily pro...	[more]
AT1G54210.1	1.7e-42	84.7	Ubiquitin-like superfamily pro...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007242	Ubiquitin-like protein Atg12	PANTHER	PTHR13385	AUTOPHAGY PROTEIN 12	coord: 1..94 score: 3.0
IPR007242	Ubiquitin-like protein Atg12	PFAM	PF04110	APG12	coord: 11..94 score: 2.4
None	No IPR available	GENE3D	3.10.20.90		coord: 4..94 score: 1.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000045	autophagosome assembly
biological_process	GO:0000422	autophagy of mitochondrion
biological_process	GO:0006995	cellular response to nitrogen starvation
biological_process	GO:0006501	C-terminal protein lipidation
biological_process	GO:0015031	protein transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0034274	Atg12-Atg5-Atg16 complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0034045	phagophore assembly site membrane
molecular_function	GO:0019776	Atg8 ligase activity