Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAATGCTTTTTCCAATCAATTAAAGTTAGATTGAATAACAAAAGTCACAAAATCACCAACAATAATACTCCAATATTCACTACAACTCTCTCTCTCTCCTCTGTTCTCCAATACACTTGAATACCCTACCAACTCTTCTTTACGGCCAACATAAAACAACCATTCTTCTCTTACTTTTCTCTCTCTCAAATCTCAATCTATCCCTTTTTCTCTCTCTAAAATCTCAATCTATTACCGCAGAAGAACTGAAAATCTAAAATGGCTGACAACAAGGTGAATCCGATTGACAACGCAATGGGTCTGCTTCGTCTTCGTGTCGTTCGTGGTATTAATCTTGCTATTCGTGATGTTAAGAGTAGTGATCCTTATGTCGTTGTTCGTCTTGGCAAACAGGTACACTTCTATTTCATTCCTTTTATCTCATTTTCGATCTCTTTACCTCCATTGCTATTCCCCTCCTTCTGGAATTAATTTGAACCTGACAACTAATCTCACAAGGAGTATAGTCAGCTTGTTTTGTTTCTGCTTAATTTCTGTCATACTTCTATGTGTTAATTTTAATATAATTTTTTGGATTATCGATTACCCCCCCAAAAAAAGTCGGAATCTGAAAATGCACCGTTGAATAAAAATGAGAAGAAAAAACAGAAGTCGCTTTAAATTCTGCTTTAACTTATTTCGTGTCGGGCTAACTTCATTTAGACCAACTAATTAATCAATTTTATAACTTAATTACGCTTATTTAAAGTTAGTGGATGTTATAACCGACTCTTTCCGTGTATTTAAAAATCTTTGTCTTAATTGAAAAGTTAATTAATAAATATAGCCGGATTTTCTGGTTGAGCCAAACCCAACCTGAAACACTAGTTTGACATAGAGCTTTTAAAATATGTCATCTGGTCGGGTCTAGGTCGGGTCATAATCAGGTCAGATCATATCGGATTACTTTATCACTCTGGTTCAAAGCGGGTTGGTTTTCTGTAGGTCATATCGAGTTATTTTTTCTATTTCGGGTGCAAATCGAGTTAGGATCGATTCATGCTCAAATTGGGTTAAATTTTGAATTTTGGTCATTGCAGCAGTTAATGTTTGTCACGGTTAACATGGAAAAGAAAACCTTGTCTATAGAGGCGTACACGGTTCTCTAGTTTTCTAACGTAGGCACGAGGTAAAGCTTTGTATTAATTACGGATCGAGTAAACACTAAATAGGCTATTGATAAGTAATAAAGACATTGACAACACTTCAAAAAAACTTTTGACAATTTTATAATTTCACGTAACATTTAACTCCGTATACTATTATTTGATAGAGAAGATGACGTAAAAATTAGGACAAAGGACGAATTTTCCACGTGAAATGGGCCGTCTAGGTAGACGAAGTTCGTAACATAGAAGATGGTAAATGAAGTAATTTGACTGGAATCTGTGGATAAGGTAGTCAAACCTCAAACCTCATAATTATATTTTATATTATGCCCCTCTATTTGAATTGTCATAGATAGAGTCTGACTAATTGCTTAATTAATAAATCGGCGTTGTCAATAGTGTGACATTTGACATTAGTCCGGCCACTAATAACATTTCGCCTTCTGTTAATTGCTTAACTATCTACCTAAAATGGATTCTACTACATGTACACCTAGTGTACAATTCATTTTGTACACCATGTTTTTCTATTAGTTGAAATGACATGTTTACTGCTTTTCATTCTCATTTTTTAGTGGATTTGATAATGTGTCAACAAATTAATGGTGGTGTACATGAGAAACTTGTATACTAGGTGTACATGTAACCTTTTCCACCCAAAACACCCTGGTGCTTATTAGTAATTAATTGGGATAAATAACGGATTTTACAGTATTGGTTAAGTATTAAATTAATACTCTTGTTCATGTAATTCTTTCTCAGAAACTCAAGACTCGTATCATTAAGAAATCTCTTAATCCGGAGTGGAATGAAGATCTAACTCTCTGTGTTACGGATCCCAATGAATCACTTAAATTTGTAAGTACACTTAACTTTATACCAATTTCTTCATGTCTATCAAATGAAATGAAGCAAAACATAATGCAATCTTGCTTTTTTGTTGTTGATATTTTCCCGTTAATCATGGAAGCATTTTATGTGGCTCTAGATGTTTTTTTAACAAAATCTTTTTTCTAGATTAAAGCTGATCCTGTAATCAGCATTATGTAAAGTCTCAACTACGTAAACAATAGCTTTTGCTTATTCTTTTTGGCTTTCACTGGGACCCATACTTTTTAATCTGGACAATCTTGACACCTTTCTAGTTATGTGATGGATACGCGGCATATGCTTGTGATGTATAGATGTCAAAAACTGATCCGATCCGAATACCCGATTGAATTCGTAATCGATCATGGTCCAAAATTTTGGTAAAATAGATAATCCGAAACCCGACTTGTACTGGACCAGAAAAAATCGATAATCGATTTTAACCCGAGGTTGTATAACCTAAACCCGACGGAAAGATGATCGATAACTGAATTAACCCACTGAACAATGACCTTAGCCCGATTTTTACACATAACCTGTTAGTTACTTGACTTGTGGGATAAATATATTATGCTTGAATATTTGAGATGACCAAATCAGTTATCGACTTGATCTTAATCTACCGAGAGTGAACTCGGCCTAAATTTTAACCGACTCGAAAATTATTCGATCCGAACTTGACTCCAAGCCCGAGATTAACTGCTACAAATCCGATTTAAACCCGACTATATAAGACCCAAACCTGGAATTGGACCCGATCTGTATATGAAATGGGAAAAACCCGACATGGCCCGACCAAAAACCAACCCAAGTGATAAAATAACATGATATGACCCGATCATGACCCGAGATCACCCAACCCGGACCTGACCCGATGACTTTTTTTTGACAGCTTTGTGATGTAGACGTGATTTTATCCTAGACATCTTTCTAGTTTTGTGAAGCACCTAAGTAATTTCGAATTTTGACTAATTGTTGTTCATTTGTGTGTGAAATTGATCAGTTTGTTTACGACCATGACGTATTCTCCTTGGATGACAAAATGGGAGACGCAGAGTTTGATATCAAGCCATTTTTGGAAGCAGTGAAGATGAATCTTCAAGGTGTTCCAGATGGAATAGTCGTCACAAAAGTTAAACCAGACAGGGAAAACTGCATTGCAGAAGAAAGCTCGATTGTTTGGAAAGATGGTAAAGTTACTCAAAACATGTTTCTCAGACTTAGAAATGTTGAGTGTGGTGAGATCGAGCTCCAAGTTCAGTGGATTGATCTTCCCCGTTCTTGATTAATTTCCTAGCTAGTCTAGTCTGTTATTTGTACATATAGCAAACTCATCAACATATTATTGGGGTTTTTTGGATCTCATGTATGAGAGAGTTTCGAATCTAGGATGCATAAAAACATGCAATAGTTTCATTAGTACTATTTTGATTTTAATGTAGCTGATTAAATTTTGTATGTGAGACTTTTAATGTTACTATTTGAAGATTGTTAATTATCTAGAAGATGTCGTGAGTTTGTTATTTACTACTCCCTCCGTCCCATAATATAGTGCCTGTTTTCCTAAAATGGTGTCCCTAAATGATGTGCCTATTTCTATTTTAAACCATTAATTTTTACTTTGAAAATTGTATTTTTTGACTTTTATTCAACCCATGTGCTTGATTTTTGTCTTTTTTAGGCCTATTTATTATGTACACACCTTTAATCTCTAATTTCTCTCTCCATAAAAGCCAACTAACATGTACTTTATCTTGAAAGAACAAATAATTATTGTTTTTATTATCAATGTTATACTTTACCTTAATAACCGTGATTTTGGTCAAACGGGCA CAATGCTTTTTCCAATCAATTAAAGTTAGATTGAATAACAAAAGTCACAAAATCACCAACAATAATACTCCAATATTCACTACAACTCTCTCTCTCTCCTCTGTTCTCCAATACACTTGAATACCCTACCAACTCTTCTTTACGGCCAACATAAAACAACCATTCTTCTCTTACTTTTCTCTCTCTCAAATCTCAATCTATCCCTTTTTCTCTCTCTAAAATCTCAATCTATTACCGCAGAAGAACTGAAAATCTAAAATGGCTGACAACAAGGTGAATCCGATTGACAACGCAATGGGTCTGCTTCGTCTTCGTGTCGTTCGTGGTATTAATCTTGCTATTCGTGATGTTAAGAGTAGTGATCCTTATGTCGTTGTTCGTCTTGGCAAACAGAAACTCAAGACTCGTATCATTAAGAAATCTCTTAATCCGGAGTGGAATGAAGATCTAACTCTCTGTGTTACGGATCCCAATGAATCACTTAAATTTTTTGTTTACGACCATGACGTATTCTCCTTGGATGACAAAATGGGAGACGCAGAGTTTGATATCAAGCCATTTTTGGAAGCAGTGAAGATGAATCTTCAAGGTGTTCCAGATGGAATAGTCGTCACAAAAGTTAAACCAGACAGGGAAAACTGCATTGCAGAAGAAAGCTCGATTGTTTGGAAAGATGGTAAAGTTACTCAAAACATGTTTCTCAGACTTAGAAATGTTGAGTGTGGTGAGATCGAGCTCCAAGTTCAGTGGATTGATCTTCCCCGTTCTTGATTAATTTCCTAGCTAGTCTAGTCTGTTATTTGTACATATAGCAAACTCATCAACATATTATTGGGGTTTTTTGGATCTCATGTATGAGAGAGTTTCGAATCTAGGATGCATAAAAACATGCAATAGTTTCATTAGTACTATTTTGATTTTAATGTAGCTGATTAAATTTTGTATGTGAGACTTTTAATGTTACTATTTGAAGATTGTTAATTATCTAGAAGATGTCGTGAGTTTGTTATTTACTACTCCCTCCGTCCCATAATATAGTGCCTGTTTTCCTAAAATGGTGTCCCTAAATGATGTGCCTATTTCTATTTTAAACCATTAATTTTTACTTTGAAAATTGTATTTTTTGACTTTTATTCAACCCATGTGCTTGATTTTTGTCTTTTTTAGGCCTATTTATTATGTACACACCTTTAATCTCTAATTTCTCTCTCCATAAAAGCCAACTAACATGTACTTTATCTTGAAAGAACAAATAATTATTGTTTTTATTATCAATGTTATACTTTACCTTAATAACCGTGATTTTGGTCAAACGGGCA ATGGCTGACAACAAGGTGAATCCGATTGACAACGCAATGGGTCTGCTTCGTCTTCGTGTCGTTCGTGGTATTAATCTTGCTATTCGTGATGTTAAGAGTAGTGATCCTTATGTCGTTGTTCGTCTTGGCAAACAGAAACTCAAGACTCGTATCATTAAGAAATCTCTTAATCCGGAGTGGAATGAAGATCTAACTCTCTGTGTTACGGATCCCAATGAATCACTTAAATTTTTTGTTTACGACCATGACGTATTCTCCTTGGATGACAAAATGGGAGACGCAGAGTTTGATATCAAGCCATTTTTGGAAGCAGTGAAGATGAATCTTCAAGGTGTTCCAGATGGAATAGTCGTCACAAAAGTTAAACCAGACAGGGAAAACTGCATTGCAGAAGAAAGCTCGATTGTTTGGAAAGATGGTAAAGTTACTCAAAACATGTTTCTCAGACTTAGAAATGTTGAGTGTGGTGAGATCGAGCTCCAAGTTCAGTGGATTGATCTTCCCCGTTCTTGA MADNKVNPIDNAMGLLRLRVVRGINLAIRDVKSSDPYVVVRLGKQKLKTRIIKKSLNPEWNEDLTLCVTDPNESLKFFVYDHDVFSLDDKMGDAEFDIKPFLEAVKMNLQGVPDGIVVTKVKPDRENCIAEESSIVWKDGKVTQNMFLRLRNVECGEIELQVQWIDLPRS Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo03897.1 vs. NCBI nr
Match: gi|902231731|gb|KNA22377.1| (hypothetical protein SOVF_034620 [Spinacia oleracea]) HSP 1 Score: 346.7 bits (888), Expect = 2.400e-92 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
BLAST of Spo03897.1 vs. NCBI nr
Match: gi|731319218|ref|XP_010670143.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 304.3 bits (778), Expect = 1.300e-79 Identity = 143/170 (84.12%), Postives = 156/170 (91.76%), Query Frame = 1
BLAST of Spo03897.1 vs. NCBI nr
Match: gi|698418773|ref|XP_009783267.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD13 [Nicotiana sylvestris]) HSP 1 Score: 257.7 bits (657), Expect = 1.400e-65 Identity = 115/162 (70.99%), Postives = 144/162 (88.89%), Query Frame = 1
BLAST of Spo03897.1 vs. NCBI nr
Match: gi|848882413|ref|XP_012841534.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD13 [Erythranthe guttata]) HSP 1 Score: 256.5 bits (654), Expect = 3.200e-65 Identity = 110/170 (64.71%), Postives = 146/170 (85.88%), Query Frame = 1
BLAST of Spo03897.1 vs. NCBI nr
Match: gi|697121761|ref|XP_009614861.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD13 [Nicotiana tomentosiformis]) HSP 1 Score: 256.1 bits (653), Expect = 4.200e-65 Identity = 115/162 (70.99%), Postives = 143/162 (88.27%), Query Frame = 1
BLAST of Spo03897.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RU82_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_034620 PE=4 SV=1) HSP 1 Score: 346.7 bits (888), Expect = 1.600e-92 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
BLAST of Spo03897.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CYM6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g039490 PE=4 SV=1) HSP 1 Score: 304.3 bits (778), Expect = 9.300e-80 Identity = 143/170 (84.12%), Postives = 156/170 (91.76%), Query Frame = 1
BLAST of Spo03897.1 vs. UniProtKB/TrEMBL
Match: A0A022R310_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014822mg PE=4 SV=1) HSP 1 Score: 256.5 bits (654), Expect = 2.200e-65 Identity = 110/170 (64.71%), Postives = 146/170 (85.88%), Query Frame = 1
BLAST of Spo03897.1 vs. UniProtKB/TrEMBL
Match: W9RFG5_9ROSA (Putative ADP-ribosylation factor GTPase-activating protein AGD11 OS=Morus notabilis GN=L484_017365 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 6.500e-65 Identity = 113/162 (69.75%), Postives = 143/162 (88.27%), Query Frame = 1
BLAST of Spo03897.1 vs. UniProtKB/TrEMBL
Match: B9T6Z1_RICCO (ARF GTPase activator, putative OS=Ricinus communis GN=RCOM_0076880 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 4.200e-64 Identity = 113/162 (69.75%), Postives = 142/162 (87.65%), Query Frame = 1
BLAST of Spo03897.1 vs. ExPASy Swiss-Prot
Match: CAR4_ARATH (Protein C2-DOMAIN ABA-RELATED 4 OS=Arabidopsis thaliana GN=CAR4 PE=1 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 2.500e-62 Identity = 106/162 (65.43%), Postives = 136/162 (83.95%), Query Frame = 1
BLAST of Spo03897.1 vs. ExPASy Swiss-Prot
Match: CAR5_ARATH (Protein C2-DOMAIN ABA-RELATED 5 OS=Arabidopsis thaliana GN=CAR5 PE=2 SV=1) HSP 1 Score: 231.9 bits (590), Expect = 5.300e-60 Identity = 103/168 (61.31%), Postives = 139/168 (82.74%), Query Frame = 1
BLAST of Spo03897.1 vs. ExPASy Swiss-Prot
Match: CAR3_ARATH (Protein C2-DOMAIN ABA-RELATED 3 OS=Arabidopsis thaliana GN=CAR3 PE=3 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 9.300e-57 Identity = 96/162 (59.26%), Postives = 133/162 (82.10%), Query Frame = 1
BLAST of Spo03897.1 vs. ExPASy Swiss-Prot
Match: CAR1_ARATH (Protein C2-DOMAIN ABA-RELATED 1 OS=Arabidopsis thaliana GN=CAR1 PE=1 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 9.300e-57 Identity = 100/165 (60.61%), Postives = 133/165 (80.61%), Query Frame = 1
BLAST of Spo03897.1 vs. ExPASy Swiss-Prot
Match: CAR2_ARATH (Protein C2-DOMAIN ABA-RELATED 2 OS=Arabidopsis thaliana GN=CAR2 PE=3 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 3.500e-56 Identity = 102/161 (63.35%), Postives = 132/161 (81.99%), Query Frame = 1
BLAST of Spo03897.1 vs. TAIR (Arabidopsis)
Match: AT3G17980.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 239.6 bits (610), Expect = 1.400e-63 Identity = 106/162 (65.43%), Postives = 136/162 (83.95%), Query Frame = 1
BLAST of Spo03897.1 vs. TAIR (Arabidopsis)
Match: AT1G48590.2 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 231.9 bits (590), Expect = 3.000e-61 Identity = 103/168 (61.31%), Postives = 139/168 (82.74%), Query Frame = 1
BLAST of Spo03897.1 vs. TAIR (Arabidopsis)
Match: AT1G73580.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 221.1 bits (562), Expect = 5.300e-58 Identity = 96/162 (59.26%), Postives = 133/162 (82.10%), Query Frame = 1
BLAST of Spo03897.1 vs. TAIR (Arabidopsis)
Match: AT1G66360.1 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 219.2 bits (557), Expect = 2.000e-57 Identity = 102/161 (63.35%), Postives = 132/161 (81.99%), Query Frame = 1
BLAST of Spo03897.1 vs. TAIR (Arabidopsis)
Match: AT5G37740.2 (Calcium-dependent lipid-binding (CaLB domain) family protein) HSP 1 Score: 213.0 bits (541), Expect = 1.400e-55 Identity = 100/175 (57.14%), Postives = 133/175 (76.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03897.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03897.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03897.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo03897.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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