Spo05875.1 (mRNA)

Overview
NameSpo05875.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1 (1.97.1.12) (PSI-A) (PsaA)
Locationchr1 : 49019666 .. 49020521 (-)
Sequence length246
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCATTTAGCAGGACTACTAGGACTTGGGTCTCTTTCTTGGGCGGGTCATCAAATCCATGTATCTTTACCGATTAACCAATTTCTAAATGCTGGAGTAGATCCTAAAGAGATACCGCTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCTCAACTTTATGGCTAGTAGTGGAGTAGTGGGAGGTTACCACGTTTACTGGGTAATTAATGGGTAGTTAAAATGACATTTAGAGGGGTTAATGAACCGCAACTCTGCAAGTACCAAGTACCAAGGCCCACGGCCCGCGTGCGCGTATGTGTTGTGTGTCCACCCATGCCACTCACATGCTTTCTTAAGCAAATGTTTCCCTCAAGTCCCCAAATATAAACATTGAAAGTAGTTGGTGTTTTTCAATGTGGGACTTTTCACCTTCCCACTTTTCCCCACTCATTTTCTTTTGTATTCTCACTGGGACTTCCTAAACATATTTTGCAGTTTTTGCAAGAGCGCGCTGCTTGAATTCTGCAGCAGATAAATGTGGCAACAGATGTCCAGAATGCAGGCATCTAATACCAATCAGGTAATAAATAATAATAACCCAAATTAGCAGTTAAAACTAAATTAATGTCAGGAATTGTTTTATGCATACAAATATGCAATAGTTGATGATTTTTTGTGTGTGCAGGAATTGCACTATAAACACAGGGCTTTGGAACACCATACAGCTTCTATTCCCAGCCGAAATCGGGCCGATGGTAGCAGCTGCAACGTCGAGCAGTACAGCAGCTGA

mRNA sequence

ATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCATTTAGCAGGACTACTAGGACTTGGGTCTCTTTCTTGGGCGGGTCATCAAATCCATGAATTGCACTATAAACACAGGGCTTTGGAACACCATACAGCTTCTATTCCCAGCCGAAATCGGGCCGATGGTAGCAGCTGCAACGTCGAGCAGTACAGCAGCTGA

Coding sequence (CDS)

ATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCATTTAGCAGGACTACTAGGACTTGGGTCTCTTTCTTGGGCGGGTCATCAAATCCATGAATTGCACTATAAACACAGGGCTTTGGAACACCATACAGCTTCTATTCCCAGCCGAAATCGGGCCGATGGTAGCAGCTGCAACGTCGAGCAGTACAGCAGCTGA

Protein sequence

MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHELHYKHRALEHHTASIPSRNRADGSSCNVEQYSS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo05875Spo05875gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo05875.1Spo05875.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05875.1.CDS.2Spo05875.1.CDS.2CDS
Spo05875.1.CDS.1Spo05875.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05875.1.exon.2Spo05875.1.exon.2exon
Spo05875.1.exon.1Spo05875.1.exon.1exon


Homology
BLAST of Spo05875.1 vs. NCBI nr
Match: gi|1002161805|ref|YP_009231911.1| (photosystem I P700 apoprotein A1 (chloroplast) [Goodyera velutina])

HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. NCBI nr
Match: gi|922328589|ref|XP_013443687.1| (photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula])

HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. NCBI nr
Match: gi|17369250|sp|Q9MUK3.1|PSAA_SEQSE (RecName: Full=Photosystem I P700 chlorophyll a apoprotein A1; AltName: Full=PSI-A; AltName: Full=PsaA)

HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 161 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 207

BLAST of Spo05875.1 vs. NCBI nr
Match: gi|228016729|gb|ACP51557.1| (photosystem I P700 chlorophyll a apoprotein A1 [Pinus aristata])

HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 174 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 220

BLAST of Spo05875.1 vs. NCBI nr
Match: gi|694137528|ref|YP_009073427.1| (photosystem I P700 apoprotein A1 (plastid) [Thysanolaena latifolia])

HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Match: T1SCI7_COCNU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cocos nucifera GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Match: A0A0U2DX72_9ASPA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Anoectochilus roxburghii GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Match: A0A0D4WU94_9LILI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Carludovica palmata GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Match: A0A0H3VTJ1_9LILI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Leopoldinia pulchra GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Match: H6SZB6_9POAL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Joinvillea ascendens GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Match: PSAA_ORYSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza sativa subsp. indica GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.600e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Match: PSAA_SEQSE (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Sequoia sempervirens GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.600e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 161 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 207

BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Match: PSAA_ACOCL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.600e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Match: PSAA_SPIOL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Spinacia oleracea GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.600e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Match: PSAA_SORBI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Sorghum bicolor GN=psaA PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.600e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 216

BLAST of Spo05875.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 105.9 bits (263), Expect = 1.200e-23
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1

		  

Query: 1   MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQ+H
Sbjct: 170 MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVH 216

BLAST of Spo05875.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein)

HSP 1 Score: 60.1 bits (144), Expect = 7.400e-10
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1

		  

Query: 2   LFAGWFHYH-KAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIH 48
           L  GW H   K  P+++WF++ ES LNHHL+GL G+ SL+W GH +H
Sbjct: 150 LIGGWLHLQPKWKPRVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVH 196

The following BLAST results are available for this feature:
BLAST of Spo05875.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|1002161805|ref|YP_009231911.1|2.6e-20100.photosystem I P700 apoprotein ... [more]
gi|922328589|ref|XP_013443687.1|2.6e-20100.photosystem I P700 chlorophyll... [more]
gi|17369250|sp|Q9MUK3.1|PSAA_SEQSE2.6e-20100.RecName: Full=Photosystem I P7... [more]
gi|228016729|gb|ACP51557.1|2.6e-20100.photosystem I P700 chlorophyll... [more]
gi|694137528|ref|YP_009073427.1|2.6e-20100.photosystem I P700 apoprotein ... [more]
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BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
T1SCI7_COCNU1.8e-20100.Photosystem I P700 chlorophyll... [more]
A0A0U2DX72_9ASPA1.8e-20100.Photosystem I P700 chlorophyll... [more]
A0A0D4WU94_9LILI1.8e-20100.Photosystem I P700 chlorophyll... [more]
A0A0H3VTJ1_9LILI1.8e-20100.Photosystem I P700 chlorophyll... [more]
H6SZB6_9POAL1.8e-20100.Photosystem I P700 chlorophyll... [more]
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BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAA_ORYSI1.6e-22100.Photosystem I P700 chlorophyll... [more]
PSAA_SEQSE1.6e-22100.Photosystem I P700 chlorophyll... [more]
PSAA_ACOCL1.6e-22100.Photosystem I P700 chlorophyll... [more]
PSAA_SPIOL1.6e-22100.Photosystem I P700 chlorophyll... [more]
PSAA_SORBI1.6e-22100.Photosystem I P700 chlorophyll... [more]
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BLAST of Spo05875.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
ATCG00350.11.2e-2397.8Photosystem I, PsaA/PsaB prote... [more]
ATCG00340.17.4e-1051.0Photosystem I, PsaA/PsaB prote... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001280Photosystem I PsaA/PsaBGENE3D1.20.1130.10coord: 1..55
score: 2.9
IPR001280Photosystem I PsaA/PsaBPFAMPF00223PsaA_PsaBcoord: 1..58
score: 8.7
IPR001280Photosystem I PsaA/PsaBunknownSSF81558Photosystem I subunits PsaA/PsaBcoord: 1..57
score: 7.46
NoneNo IPR availablePANTHERPTHR30128OUTER MEMBRANE PROTEIN, OMPA-RELATEDcoord: 1..47
score: 2.7
NoneNo IPR availablePANTHERPTHR30128:SF8PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1coord: 1..47
score: 2.7

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0009579 thylakoid
cellular_component GO:0009535 chloroplast thylakoid membrane
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0016491 oxidoreductase activity