Spo05841.1 (mRNA) | SpinachBase

Overview


Name	Spo05841.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 49737648 .. 49738049 (-)
Sequence length	402

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGGCTTTTGCGAGAACTGATTCGAAAGCCATCAACTTCTAGCAGATTCATTGCGACATTGTCCCATCAAAACCCCACTAATCTCTCTCCTTCATTGCTGTTTAACCAGTCAATTCTTTTCGGTAAAACCAATTTTGACAATGGAGGTGGGTTAAACCCTAGCAGCAACCAGGGTTTAGCAGAAGCGACCCATTTCAGCAAATCGCAGATTTATCCGAGTTTCTCACTTGGGTATTTCTTGGACCCGATTTCGCCACCTGGTCTGGTATCTGAGCCCGAAGTGGAGGATCGGGGAATGATGTGGGCTGATAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGCATAAGTATAAGAAGCTCAGGAAACGTCTTCGTCGAAAGACCAAGACTTGA

mRNA sequence

ATGGCTAGGCTTTTGCGAGAACTGATTCGAAAGCCATCAACTTCTAGCAGATTCATTGCGACATTGTCCCATCAAAACCCCACTAATCTCTCTCCTTCATTGCTGTTTAACCAGTCAATTCTTTTCGGTAAAACCAATTTTGACAATGGAGGTGGGTTAAACCCTAGCAGCAACCAGGGTTTAGCAGAAGCGACCCATTTCAGCAAATCGCAGATTTATCCGAGTTTCTCACTTGGGTATTTCTTGGACCCGATTTCGCCACCTGGTCTGGTATCTGAGCCCGAAGTGGAGGATCGGGGAATGATGTGGGCTGATAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGCATAAGTATAAGAAGCTCAGGAAACGTCTTCGTCGAAAGACCAAGACTTGA

Coding sequence (CDS)

ATGGCTAGGCTTTTGCGAGAACTGATTCGAAAGCCATCAACTTCTAGCAGATTCATTGCGACATTGTCCCATCAAAACCCCACTAATCTCTCTCCTTCATTGCTGTTTAACCAGTCAATTCTTTTCGGTAAAACCAATTTTGACAATGGAGGTGGGTTAAACCCTAGCAGCAACCAGGGTTTAGCAGAAGCGACCCATTTCAGCAAATCGCAGATTTATCCGAGTTTCTCACTTGGGTATTTCTTGGACCCGATTTCGCCACCTGGTCTGGTATCTGAGCCCGAAGTGGAGGATCGGGGAATGATGTGGGCTGATAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGCATAAGTATAAGAAGCTCAGGAAACGTCTTCGTCGAAAGACCAAGACTTGA

Protein sequence

MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQGLAEATHFSKSQIYPSFSLGYFLDPISPPGLVSEPEVEDRGMMWADSVKKKRKKKMNKHKYKKLRKRLRRKTKT

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo05841	Spo05841	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo05841.1	Spo05841.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05841.1.CDS.1	Spo05841.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05841.1.exon.1	Spo05841.1.exon.1	exon

Homology

[Close]

BLAST of Spo05841.1 vs. NCBI nr
Match: gi|902229474|gb|KNA21519.1| (hypothetical protein SOVF_042460 [Spinacia oleracea])

HSP 1 Score: 252.7 bits (644), Expect = 3.600e-64
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


		  
Query: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQG 60
           MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQG
Sbjct: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQG 60

Query: 61  LAEATHFSKSQIYPSFSLGYFLDPISPPGLVSEPEVEDRGMMWADSVKKKRKKKMNKHKY 120
           LAEATHFSKSQIYPSFSLGYFLDPISPPGLVSEPEVEDRGMMWADSVKKKRKKKMNKHKY
Sbjct: 61  LAEATHFSKSQIYPSFSLGYFLDPISPPGLVSEPEVEDRGMMWADSVKKKRKKKMNKHKY 120

Query: 121 KKLRKRLRRKTKT 134
           KKLRKRLRRKTKT
Sbjct: 121 KKLRKRLRRKTKT 133

[Close]

BLAST of Spo05841.1 vs. NCBI nr
Match: gi|870840654|gb|KMS94874.1| (hypothetical protein BVRB_014490 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 156.4 bits (394), Expect = 3.500e-35
Identity = 97/137 (70.80%), Postives = 106/137 (77.37%), Query Frame = 1


		  
Query: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQG 60
           MARLLRELIRKPS SSRFIAT +HQNP+NLSP L  +QS  FG+T FD+G GLNP  NQG
Sbjct: 1   MARLLRELIRKPS-SSRFIATFTHQNPSNLSPPLFVHQSF-FGQTKFDHGNGLNPV-NQG 60

Query: 61  LAEATHFSKSQIYPSFSLGYFLDPISPPGLVSE----PEVEDRGMMWADSVKKKRKKKMN 120
           L +     K QIYPSFS G+F+DP    GL S     PE+E  GMMWADSVKKKRKKKMN
Sbjct: 61  LTD-----KLQIYPSFSFGFFMDPNLQSGLGSSLLVVPELEHSGMMWADSVKKKRKKKMN 120

Query: 121 KHKYKKLRKRLRRKTKT 134
           KHKYKKLRKRLRRKTKT
Sbjct: 121 KHKYKKLRKRLRRKTKT 129

[Close]

BLAST of Spo05841.1 vs. NCBI nr
Match: gi|147788256|emb|CAN67397.1| (hypothetical protein VITISV_022672 [Vitis vinifera])

HSP 1 Score: 96.7 bits (239), Expect = 3.300e-17
Identity = 68/139 (48.92%), Postives = 84/139 (60.43%), Query Frame = 1


		  
Query: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQG 60
           MA  +R+L+RKPS   R +  L++   +NL    L ++  L  +T FD    LNP     
Sbjct: 1   MAAAVRKLLRKPSYQ-RILPCLNNGKSSNLVAPPLLHKPYL-PETKFDAEPNLNPCQGSS 60

Query: 61  LAEA-THFSKSQIYPSFSLGYFLDPI-------SPPGLVSEPEVEDRGMMWADSVKKKRK 120
             E  TH+S  QIYPSF  GY L+PI       S P  V E + +D   +WADSVKKKRK
Sbjct: 61  TTENHTHYSSFQIYPSFPFGYCLNPIPSPVLEQSQPSKVEEVDSDDSRTIWADSVKKKRK 120

Query: 121 KKMNKHKYKKLRKRLRRKT 132
           KKMNKHKYKKLRKRLRR+T
Sbjct: 121 KKMNKHKYKKLRKRLRRRT 137

[Close]

BLAST of Spo05841.1 vs. NCBI nr
Match: gi|731372733|ref|XP_010650803.1| (PREDICTED: uncharacterized protein LOC104879512 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 6.900e-15
Identity = 67/140 (47.86%), Postives = 83/140 (59.29%), Query Frame = 1


		  
Query: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNL-SPSLLFNQSILFGKTNFDNGGGLNPSSNQ 60
           MA  +++L+RKPS   R +  L++   +NL +P LL        +T  D    LNP    
Sbjct: 1   MAAAVQKLLRKPSYQ-RILPCLNNGKSSNLVAPPLLHKPYP--PETKSDAEPNLNPCQGS 60

Query: 61  GLAEA-THFSKSQIYPSFSLGYFLDPISPPGL-------VSEPEVEDRGMMWADSVKKKR 120
              E  TH+S  QIYPSF  GY L+PI  P L       V E + +D   +WADSVKKKR
Sbjct: 61  STTENHTHYSSFQIYPSFPFGYCLNPIPSPVLEQSQPLKVEEVDSDDSRTIWADSVKKKR 120

Query: 121 KKKMNKHKYKKLRKRLRRKT 132
           KKKMNKHKYKKLRKRLRR+T
Sbjct: 121 KKKMNKHKYKKLRKRLRRRT 137

[Close]

BLAST of Spo05841.1 vs. NCBI nr
Match: gi|659098254|ref|XP_008450047.1| (PREDICTED: uncharacterized protein LOC103491757 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 2.600e-14
Identity = 68/136 (50.00%), Postives = 85/136 (62.50%), Query Frame = 1


		  
Query: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGK-TNFDNGGGLNPSSNQ 60
           MA +L++LIRK S  SR IA L  Q   NLS   + +Q + F K ++  +   LN +S  
Sbjct: 1   MASMLQKLIRK-SPPSRLIAALGAQTSQNLSTPFILHQPLDFDKKSDAHSHSNLNSAST- 60

Query: 61  GLAEATHFSKSQIYPSFSLGYFLDPISPPGLVS-EP---EVEDRGMMWADSVKKKRKKKM 120
             +  +HFS  Q YPSF  G  L  IS  GL+  EP   E +D   +WADSVKKKRK+KM
Sbjct: 61  --SNPSHFS--QFYPSFPFGLCLPQISSTGLLPFEPDYVEQDDSRKLWADSVKKKRKRKM 120

Query: 121 NKHKYKKLRKRLRRKT 132
           NKHKYKKLRKRLRR+T
Sbjct: 121 NKHKYKKLRKRLRRQT 130

[Close]

BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRI0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_042460 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.500e-64
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


		  
Query: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQG 60
           MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQG
Sbjct: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQG 60

Query: 61  LAEATHFSKSQIYPSFSLGYFLDPISPPGLVSEPEVEDRGMMWADSVKKKRKKKMNKHKY 120
           LAEATHFSKSQIYPSFSLGYFLDPISPPGLVSEPEVEDRGMMWADSVKKKRKKKMNKHKY
Sbjct: 61  LAEATHFSKSQIYPSFSLGYFLDPISPPGLVSEPEVEDRGMMWADSVKKKRKKKMNKHKY 120

Query: 121 KKLRKRLRRKTKT 134
           KKLRKRLRRKTKT
Sbjct: 121 KKLRKRLRRKTKT 133

[Close]

BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B1H8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_014490 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.500e-35
Identity = 97/137 (70.80%), Postives = 106/137 (77.37%), Query Frame = 1


		  
Query: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQG 60
           MARLLRELIRKPS SSRFIAT +HQNP+NLSP L  +QS  FG+T FD+G GLNP  NQG
Sbjct: 1   MARLLRELIRKPS-SSRFIATFTHQNPSNLSPPLFVHQSF-FGQTKFDHGNGLNPV-NQG 60

Query: 61  LAEATHFSKSQIYPSFSLGYFLDPISPPGLVSE----PEVEDRGMMWADSVKKKRKKKMN 120
           L +     K QIYPSFS G+F+DP    GL S     PE+E  GMMWADSVKKKRKKKMN
Sbjct: 61  LTD-----KLQIYPSFSFGFFMDPNLQSGLGSSLLVVPELEHSGMMWADSVKKKRKKKMN 120

Query: 121 KHKYKKLRKRLRRKTKT 134
           KHKYKKLRKRLRRKTKT
Sbjct: 121 KHKYKKLRKRLRRKTKT 129

[Close]

BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Match: A5B1K2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022672 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.300e-17
Identity = 68/139 (48.92%), Postives = 84/139 (60.43%), Query Frame = 1


		  
Query: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQG 60
           MA  +R+L+RKPS   R +  L++   +NL    L ++  L  +T FD    LNP     
Sbjct: 1   MAAAVRKLLRKPSYQ-RILPCLNNGKSSNLVAPPLLHKPYL-PETKFDAEPNLNPCQGSS 60

Query: 61  LAEA-THFSKSQIYPSFSLGYFLDPI-------SPPGLVSEPEVEDRGMMWADSVKKKRK 120
             E  TH+S  QIYPSF  GY L+PI       S P  V E + +D   +WADSVKKKRK
Sbjct: 61  TTENHTHYSSFQIYPSFPFGYCLNPIPSPVLEQSQPSKVEEVDSDDSRTIWADSVKKKRK 120

Query: 121 KKMNKHKYKKLRKRLRRKT 132
           KKMNKHKYKKLRKRLRR+T
Sbjct: 121 KKMNKHKYKKLRKRLRRRT 137

[Close]

BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Match: A5C4N9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0137g00370 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.800e-15
Identity = 67/140 (47.86%), Postives = 83/140 (59.29%), Query Frame = 1


		  
Query: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNL-SPSLLFNQSILFGKTNFDNGGGLNPSSNQ 60
           MA  +++L+RKPS   R +  L++   +NL +P LL        +T  D    LNP    
Sbjct: 1   MAAAVQKLLRKPSYQ-RILPCLNNGKSSNLVAPPLLHKPYP--PETKSDAEPNLNPCQGS 60

Query: 61  GLAEA-THFSKSQIYPSFSLGYFLDPISPPGL-------VSEPEVEDRGMMWADSVKKKR 120
              E  TH+S  QIYPSF  GY L+PI  P L       V E + +D   +WADSVKKKR
Sbjct: 61  STTENHTHYSSFQIYPSFPFGYCLNPIPSPVLEQSQPLKVEEVDSDDSRTIWADSVKKKR 120

Query: 121 KKKMNKHKYKKLRKRLRRKT 132
           KKKMNKHKYKKLRKRLRR+T
Sbjct: 121 KKKMNKHKYKKLRKRLRRRT 137

[Close]

BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LDP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G592160 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.200e-13
Identity = 68/142 (47.89%), Postives = 82/142 (57.75%), Query Frame = 1


		  
Query: 1   MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGK-------TNFDNGGGL 60
           MA +L+ LIRK S  +R IA L  Q   NLS   + +Q + F K       +N ++    
Sbjct: 1   MASMLQNLIRK-SPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTS 60

Query: 61  NPSSNQGLAEATHFSKSQIYPSFSLGYFLDPISPPGLVS-EP---EVEDRGMMWADSVKK 120
           NPS         HFS  Q YPSF  G  L  IS  GL+  EP   E +D   +WADSVKK
Sbjct: 61  NPS---------HFS--QFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKK 120

Query: 121 KRKKKMNKHKYKKLRKRLRRKT 132
           KRK+KMNKHKYKKLRKRLRR+T
Sbjct: 121 KRKRKMNKHKYKKLRKRLRRQT 130

[Close]

BLAST of Spo05841.1 vs. TAIR (Arabidopsis)
Match: AT5G63150.1 (unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.900e-7
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1


		  
Query: 71  QIYPSFSLGYFLDPISPPGL------VSEPEVEDRG--MMWADSVKKKRKKKMNKHKYKK 130
           + YPSFS+G  L+P    GL        E E ED    +++ADSVKKKRKKKMNKHKY+K
Sbjct: 70  RFYPSFSMGLCLNPKMIQGLDLAETASLEEEEEDTKEIVIYADSVKKKRKKKMNKHKYRK 129

Query: 131 LRKRLRRKT 132
           LRK+L RK+
Sbjct: 130 LRKQLGRKS 138

The following BLAST results are available for this feature:

BLAST of Spo05841.1 vs. NCBI nr
BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
BLAST of Spo05841.1 vs. ExPASy Swiss-Prot
BLAST of Spo05841.1 vs. TAIR (Arabidopsis)

BLAST of Spo05841.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902229474\|gb\|KNA21519.1\|	3.6e-64	100.	hypothetical protein SOVF_0424...	[more]
gi\|870840654\|gb\|KMS94874.1\|	3.5e-35	70.8	hypothetical protein BVRB_0144...	[more]
gi\|147788256\|emb\|CAN67397.1\|	3.3e-17	48.9	hypothetical protein VITISV_02...	[more]
gi\|731372733\|ref\|XP_010650803.1\|	6.9e-15	47.8	PREDICTED: uncharacterized pro...	[more]
gi\|659098254\|ref\|XP_008450047.1\|	2.6e-14	50.0	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RRI0_SPIOL	2.5e-64	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B1H8_BETVU	2.5e-35	70.8	Uncharacterized protein OS=Bet...	[more]
A5B1K2_VITVI	2.3e-17	48.9	Putative uncharacterized prote...	[more]
A5C4N9_VITVI	4.8e-15	47.8	Putative uncharacterized prote...	[more]
A0A0A0LDP0_CUCSA	1.2e-13	47.8	Uncharacterized protein OS=Cuc...	[more]

BLAST of Spo05841.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo05841.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G63150.1	1.9e-7	55.0	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013177	Domain of unknown function DUF1713	PFAM	PF08213	DUF1713	coord: 104..129 score: 3.
IPR013177	Domain of unknown function DUF1713	SMART	SM01155	DUF1713_2	coord: 103..133 score: 4.
None	No IPR available	PANTHER	PTHR32035	FAMILY NOT NAMED	coord: 72..132 score: 8.1
None	No IPR available	PANTHER	PTHR32035:SF3	AURORA KINASE A-INTERACTING PROTEIN	coord: 72..132 score: 8.1