Spo05915.1 (mRNA) | SpinachBase

Overview


Name	Spo05915.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RING-H2 finger protein
Location	chr1 : 50014005 .. 50014460 (+)
Sequence length	456

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTATCAAATTTCCCAAGTCCATCAGAAGGGGTTCTACCAGTGTTAGTGATGAACACAGTAATGTCAGTTGCGATTCTGAAGAACTTACTGCGGTCAATTCTTCAATTGACAGGGGCGATAAACTGGGGTTTTTCGAGTAATTTGGAAGAAAATCAATCATCACCAACAAACGAACCAAACAGAATGAGGAGATTGAGGGGTATTTCAATTACACAGTTCAAGTATTTGTGTGCAGACAAGAGCAAGAAAAGTGACAGTAACAGTAAAATTCACAGAGATGGAAATTCCAAAATTGCCCTTGAAGGAGAGTGCTGTGTTTGTTTGTGTAAATTTGAGGATGAAGAAGAGGTGAGTGAATTGTCATGTAAGCATTTCTTCCACAGAAATTGCTTGGAAAAATGGTTTGATAATCATCACACTACTTGCCCACTTTGCAGATCCATCCACTAA

mRNA sequence

ATGGGATTATCAAATTTCCCAAGTCCATCAGAAGGGGTTCTACCAGTGTTAGTGATGAACACAGTAATGTCAGTTGCGATTCTGAAGAACTTACTGCGGTCAATTCTTCAATTGACAGGGGCGATAAACTGGGGTTTTTCGAGTAATTTGGAAGAAAATCAATCATCACCAACAAACGAACCAAACAGAATGAGGAGATTGAGGGGTATTTCAATTACACAGTTCAAGTATTTGTGTGCAGACAAGAGCAAGAAAAGTGACAGTAACAGTAAAATTCACAGAGATGGAAATTCCAAAATTGCCCTTGAAGGAGAGTGCTGTGTTTGTTTGTGTAAATTTGAGGATGAAGAAGAGGTGAGTGAATTGTCATGTAAGCATTTCTTCCACAGAAATTGCTTGGAAAAATGGTTTGATAATCATCACACTACTTGCCCACTTTGCAGATCCATCCACTAA

Coding sequence (CDS)

ATGGGATTATCAAATTTCCCAAGTCCATCAGAAGGGGTTCTACCAGTGTTAGTGATGAACACAGTAATGTCAGTTGCGATTCTGAAGAACTTACTGCGGTCAATTCTTCAATTGACAGGGGCGATAAACTGGGGTTTTTCGAGTAATTTGGAAGAAAATCAATCATCACCAACAAACGAACCAAACAGAATGAGGAGATTGAGGGGTATTTCAATTACACAGTTCAAGTATTTGTGTGCAGACAAGAGCAAGAAAAGTGACAGTAACAGTAAAATTCACAGAGATGGAAATTCCAAAATTGCCCTTGAAGGAGAGTGCTGTGTTTGTTTGTGTAAATTTGAGGATGAAGAAGAGGTGAGTGAATTGTCATGTAAGCATTTCTTCCACAGAAATTGCTTGGAAAAATGGTTTGATAATCATCACACTACTTGCCCACTTTGCAGATCCATCCACTAA

Protein sequence

MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNEPNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVSELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo05915	Spo05915	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo05915.1	Spo05915.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05915.1.exon.1	Spo05915.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo05915.1.CDS.1	Spo05915.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo05915.1 vs. NCBI nr
Match: gi|902239780|gb|KNA25722.1| (hypothetical protein SOVF_003410 [Spinacia oleracea])

HSP 1 Score: 313.2 bits (801), Expect = 2.600e-82
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNE 60
           MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNE
Sbjct: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNE 60

Query: 61  PNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVS 120
           PNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVS
Sbjct: 61  PNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVS 120

Query: 121 ELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH 152
           ELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH
Sbjct: 121 ELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH 151

[Close]

BLAST of Spo05915.1 vs. NCBI nr
Match: gi|731342168|ref|XP_010682265.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 227.6 bits (579), Expect = 1.400e-56
Identity = 117/162 (72.22%), Postives = 133/162 (82.10%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSS---- 60
           MGLSNFPSP+EGVLPVLVMNTVMSVAILKNL+RS+LQL GAINW  S+N EEN S+    
Sbjct: 1   MGLSNFPSPAEGVLPVLVMNTVMSVAILKNLVRSVLQLMGAINW-VSNNFEENSSTTTTN 60

Query: 61  ---PTNEPNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEG----ECCVC 120
              P N   R+R++RGISITQFKYLC + S KS+SNSK ++  +S   LEG    ECCVC
Sbjct: 61  ELCPPNSTYRIRKMRGISITQFKYLCHNNSGKSNSNSKKNQK-DSNFTLEGRTSIECCVC 120

Query: 121 LCKFEDEEEVSELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH 152
           LCKFEDEEEVSELSCKHFFHRNCL+KWFDNHH+TCPLCRS+H
Sbjct: 121 LCKFEDEEEVSELSCKHFFHRNCLDKWFDNHHSTCPLCRSMH 160

[Close]

BLAST of Spo05915.1 vs. NCBI nr
Match: gi|645230365|ref|XP_008221903.1| (PREDICTED: RING-H2 finger protein ATL47 [Prunus mume])

HSP 1 Score: 168.3 bits (425), Expect = 1.000e-38
Identity = 94/155 (60.65%), Postives = 114/155 (73.55%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGA-INWGFSSNLEENQSSPTN 60
           MGLSNFPS +EGVLPVLVMNTV+SVA+LKN++RS+LQ+ GA +N   S + EENQ     
Sbjct: 1   MGLSNFPSAAEGVLPVLVMNTVLSVALLKNMVRSVLQVMGANVN---SQSFEENQDGCPA 60

Query: 61  EPNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEG----ECCVCLCKFED 120
           E   + R R ISI+QFK LC      S+SNS   R  N+++A       ECCVCLC FE 
Sbjct: 61  E--MIARERRISISQFKSLC---HSNSNSNS---RPNNTRVAKTNSWAMECCVCLCGFEA 120

Query: 121 EEEVSELSCKHFFHRNCLEKWFDNHHTTCPLCRSI 151
           E+EVSELSCKHFFH+ CLEKWFDN+H+TCPLCRS+
Sbjct: 121 EQEVSELSCKHFFHKGCLEKWFDNNHSTCPLCRSV 144

[Close]

BLAST of Spo05915.1 vs. NCBI nr
Match: gi|596202066|ref|XP_007223707.1| (hypothetical protein PRUPE_ppa013029mg [Prunus persica])

HSP 1 Score: 166.4 bits (420), Expect = 3.900e-38
Identity = 90/152 (59.21%), Postives = 111/152 (73.03%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGA-INWGFSSNLEENQSSPTN 60
           MGLSNFPS +EGVLPVLVMNTV+SVA+LKN++RS+LQ+ GA +N   S + EEN   P  
Sbjct: 1   MGLSNFPSAAEGVLPVLVMNTVLSVALLKNMVRSVLQVMGANVN---SQSFEEN---PDG 60

Query: 61  EPNRM-RRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEE 120
            P  M  R R ISI+QFK LC   S    +N+ + +  +  +    ECCVCLC FE E+E
Sbjct: 61  CPAEMIARERRISISQFKSLCHSNSNSRPNNTCVAKTNSGAM----ECCVCLCGFEAEQE 120

Query: 121 VSELSCKHFFHRNCLEKWFDNHHTTCPLCRSI 151
           VSELSCKHFFH+ CLEKWFDN+H+TCPLCRS+
Sbjct: 121 VSELSCKHFFHKGCLEKWFDNNHSTCPLCRSV 142

[Close]

BLAST of Spo05915.1 vs. NCBI nr
Match: gi|568860907|ref|XP_006483954.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Citrus sinensis])

HSP 1 Score: 166.4 bits (420), Expect = 3.900e-38
Identity = 85/152 (55.92%), Postives = 111/152 (73.03%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSS--PT 60
           MGLSNFPS +EG+LP LVMNTV+SVA+LKN++RS+LQ  GA +   SSN+E+       +
Sbjct: 1   MGLSNFPSAAEGLLPGLVMNTVLSVALLKNMVRSLLQGMGAASDSSSSNVEDESDGFISS 60

Query: 61  NEPNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEE 120
           N  +   R R IS+TQFK LC  +S  S + ++ +  G++  +   ECCVCL +F+ +EE
Sbjct: 61  NSEDDNARERRISVTQFKSLCDSRSSSSSTVARSN-GGSTSCSAAMECCVCLSRFQSDEE 120

Query: 121 VSELSCKHFFHRNCLEKWFDNHHTTCPLCRSI 151
           VSELSCKHFFHR CL+KWFDN H+TCPLCRSI
Sbjct: 121 VSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151

[Close]

BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S3M5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_003410 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.800e-82
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNE 60
           MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNE
Sbjct: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNE 60

Query: 61  PNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVS 120
           PNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVS
Sbjct: 61  PNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVS 120

Query: 121 ELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH 152
           ELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH
Sbjct: 121 ELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH 151

[Close]

BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C6U0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g146750 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 9.900e-57
Identity = 117/162 (72.22%), Postives = 133/162 (82.10%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSS---- 60
           MGLSNFPSP+EGVLPVLVMNTVMSVAILKNL+RS+LQL GAINW  S+N EEN S+    
Sbjct: 1   MGLSNFPSPAEGVLPVLVMNTVMSVAILKNLVRSVLQLMGAINW-VSNNFEENSSTTTTN 60

Query: 61  ---PTNEPNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEG----ECCVC 120
              P N   R+R++RGISITQFKYLC + S KS+SNSK ++  +S   LEG    ECCVC
Sbjct: 61  ELCPPNSTYRIRKMRGISITQFKYLCHNNSGKSNSNSKKNQK-DSNFTLEGRTSIECCVC 120

Query: 121 LCKFEDEEEVSELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH 152
           LCKFEDEEEVSELSCKHFFHRNCL+KWFDNHH+TCPLCRS+H
Sbjct: 121 LCKFEDEEEVSELSCKHFFHRNCLDKWFDNHHSTCPLCRSMH 160

[Close]

BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Match: A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.700e-38
Identity = 93/151 (61.59%), Postives = 108/151 (71.52%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNE 60
           MGLSNFPS +EGVLPVLVMNTV+SVA+LKN++RS+LQ+ GA   G SS+  +++S    E
Sbjct: 1   MGLSNFPSAAEGVLPVLVMNTVLSVALLKNMVRSLLQVVGAS--GSSSSSLDDESDGYPE 60

Query: 61  PNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVS 120
            N   R R ISITQFK LC      SD +        S  A   ECCVCLC FE +EEVS
Sbjct: 61  ENIKARERRISITQFKSLC----HTSDGS-------GSGWANTVECCVCLCGFEADEEVS 120

Query: 121 ELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH 152
           ELSCKHFFH+ CLEKWFDN H+TCPLCRSIH
Sbjct: 121 ELSCKHFFHKVCLEKWFDNKHSTCPLCRSIH 138

[Close]

BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Match: A0A067H3V9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039522mg PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.700e-38
Identity = 85/152 (55.92%), Postives = 111/152 (73.03%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSS--PT 60
           MGLSNFPS +EG+LP LVMNTV+SVA+LKN++RS+LQ  GA +   SSN+E+       +
Sbjct: 1   MGLSNFPSAAEGLLPGLVMNTVLSVALLKNMVRSLLQGMGAASDSSSSNVEDESDGFISS 60

Query: 61  NEPNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEE 120
           N  +   R R IS+TQFK LC  +S  S + ++ +  G++  +   ECCVCL +F+ +EE
Sbjct: 61  NSEDDNARERRISVTQFKSLCDSRSSSSSTVARSN-GGSTSCSAAMECCVCLSRFQSDEE 120

Query: 121 VSELSCKHFFHRNCLEKWFDNHHTTCPLCRSI 151
           VSELSCKHFFHR CL+KWFDN H+TCPLCRSI
Sbjct: 121 VSELSCKHFFHRGCLDKWFDNKHSTCPLCRSI 151

[Close]

BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Match: M5XHD4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013029mg PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.700e-38
Identity = 90/152 (59.21%), Postives = 111/152 (73.03%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGA-INWGFSSNLEENQSSPTN 60
           MGLSNFPS +EGVLPVLVMNTV+SVA+LKN++RS+LQ+ GA +N   S + EEN   P  
Sbjct: 1   MGLSNFPSAAEGVLPVLVMNTVLSVALLKNMVRSVLQVMGANVN---SQSFEEN---PDG 60

Query: 61  EPNRM-RRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEE 120
            P  M  R R ISI+QFK LC   S    +N+ + +  +  +    ECCVCLC FE E+E
Sbjct: 61  CPAEMIARERRISISQFKSLCHSNSNSRPNNTCVAKTNSGAM----ECCVCLCGFEAEQE 120

Query: 121 VSELSCKHFFHRNCLEKWFDNHHTTCPLCRSI 151
           VSELSCKHFFH+ CLEKWFDN+H+TCPLCRS+
Sbjct: 121 VSELSCKHFFHKGCLEKWFDNNHSTCPLCRSV 142

[Close]

BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.400e-18
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEE----NQSS 60
           MGLS+ P PSEG+L V+++NT +S++I+K ++RS L + G      SS+       +++S
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  PTNEPNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDE 120
            T+E    R  +  S     YL  ++ +      +       K   + EC VCL KF+ +
Sbjct: 61  STSESFDFRVCQPES-----YL--EEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGD 120

Query: 121 EEVSELSCKHFFHRNCLEKWFDNHHTTCPLCRS 150
            E+++L C H FH+ CLEKW D  + TCPLCR+
Sbjct: 121 SEINKLKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.400e-9
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1


		  
Query: 105 ECCVCLCKFEDEEEVSELSCKHFFHRNCLEKWFDNHHTTCPLCRS 150
           +C VCL K ++ EEV +L C+H FH+ CLE W    + TCPLCRS
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRS 129

[Close]

BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Match: ATL33_ARATH (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 8.400e-9
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1


		  
Query: 86  SDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVSELS-CKHFFHRNCLEKWFDNHHTTC 145
           S+S  K H+D +SK  +  EC VCL  F D +E+ +LS CKH FH  C+E W  + H  C
Sbjct: 123 SESGGKFHKDTHSK-EIGNECSVCLMVFTDSDELRQLSECKHAFHVLCIETWLKD-HPNC 182

Query: 146 PLCRS 150
           P+CR+
Sbjct: 183 PICRT 185

[Close]

BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.400e-8
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1


		  
Query: 103 EGECCVCLCKFEDEEEVSELSCKHFFHRNCLEKWFDNHHTTCPLCR 149
           + ECC+CLC++ED  E+ EL C H FH  C++KW  + ++ CPLC+
Sbjct: 335 DAECCICLCEYEDGVELRELPCNHHFHCTCIDKWL-HINSRCPLCK 379

[Close]

BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 7.100e-8
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1


		  
Query: 105 ECCVCLCKFEDEEEVSELSCKHFFHRNCLEKWFDNHHTTCPLCRS 150
           +C VCL K +  EEV +L C+H FH+ CLE W  + +  CPLCRS
Sbjct: 73  DCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 117

[Close]

BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Match: AT1G67856.1 (RING/U-box superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 2.600e-32
Identity = 69/151 (45.70%), Postives = 102/151 (67.55%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNE 60
           MG+S++P+ SEGV+P+LVMNTV+SV+++KN++RS++ +  +      +N   N+    + 
Sbjct: 1   MGISHYPTASEGVMPMLVMNTVVSVSLVKNMVRSVVNMVSS-----ETNEARNKEDDQDH 60

Query: 61  PNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVS 120
            +  RR R ISIT F+ LC ++  +++  +              +CCVCLC F++EEEVS
Sbjct: 61  EDSKRRRR-ISITHFESLCENRGSRNEREAM-------------DCCVCLCGFKEEEEVS 120

Query: 121 EL-SCKHFFHRNCLEKWFDNHHTTCPLCRSI 151
           EL SCKH+FH  CL+KWF N+HTTCPLCRSI
Sbjct: 121 ELVSCKHYFHSACLDKWFGNNHTTCPLCRSI 132

[Close]

BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Match: AT1G24580.1 (RING/U-box superfamily protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.400e-25
Identity = 62/133 (46.62%), Postives = 80/133 (60.15%), Query Frame = 1


		  
Query: 19  MNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNEPNRMRRLRGISITQFKYL 78
           MNTV+S+ +LKN++RS+ Q+  +          E+     +EP      R ISITQFK L
Sbjct: 1   MNTVVSITLLKNMVRSVFQIVASET--------ESSMEIDDEPEDDFVTRRISITQFKSL 60

Query: 79  CADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVSEL-SCKHFFHRNCLEKWF 138
           C +  ++ +                 ECCVCLC F++EEEVSEL SCKHFFHR CL+ WF
Sbjct: 61  CENIEEEEEEKGV-------------ECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWF 112

Query: 139 DNHHTTCPLCRSI 151
            N+HTTCPLCRSI
Sbjct: 121 GNNHTTCPLCRSI 112

[Close]

BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Match: AT2G04240.1 (RING/U-box superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-19
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 1


		  
Query: 1   MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEE----NQSS 60
           MGLS+ P PSEG+L V+++NT +S++I+K ++RS L + G      SS+       +++S
Sbjct: 1   MGLSSLPGPSEGMLCVILVNTALSISIVKGIVRSFLGIVGISLSPSSSSPSSVTVSSENS 60

Query: 61  PTNEPNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDE 120
            T+E    R  +  S     YL  ++ +      +       K   + EC VCL KF+ +
Sbjct: 61  STSESFDFRVCQPES-----YL--EEFRNRTPTLRFESLCRCKKQADNECSVCLSKFQGD 120

Query: 121 EEVSELSCKHFFHRNCLEKWFDNHHTTCPLCRS 150
            E+++L C H FH+ CLEKW D  + TCPLCR+
Sbjct: 121 SEINKLKCGHLFHKTCLEKWIDYWNITCPLCRT 146

[Close]

BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2)

HSP 1 Score: 63.9 bits (154), Expect = 9.600e-11
Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = 1


		  
Query: 10  SEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSP--TNEPNRMRRL 69
           +E  LP L + T+  +  ++ ++ SI +  G      S  LE +Q+ P  T+ P R+   
Sbjct: 8   TEVFLPKLFVQTLSILGFIRTIVFSIFRFLG-----LSDFLEMDQTWPDYTSYPTRIPET 67

Query: 70  RGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVSEL-SCKH 129
           R    + F  L   +        ++   G     L   C VCL +FE E+E+  L +C+H
Sbjct: 68  R----SPFSALLIREILPVIKFEELTNSGED---LPENCAVCLYEFEGEQEIRWLRNCRH 127

Query: 130 FFHRNCLEKWFDNHHTTCPLCRS 150
            FHR+CL++W D+   TCPLCR+
Sbjct: 128 IFHRSCLDRWMDHDQKTCPLCRT 138

[Close]

BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Match: AT1G15100.1 (RING-H2 finger A2A)

HSP 1 Score: 61.6 bits (148), Expect = 4.700e-10
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1


		  
Query: 105 ECCVCLCKFEDEEEVSELSCKHFFHRNCLEKWFDNHHTTCPLCRS 150
           +C VCL K ++ EEV +L C+H FH+ CLE W    + TCPLCRS
Sbjct: 85  DCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRS 129

The following BLAST results are available for this feature:

BLAST of Spo05915.1 vs. NCBI nr
BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
BLAST of Spo05915.1 vs. TAIR (Arabidopsis)

BLAST of Spo05915.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902239780\|gb\|KNA25722.1\|	2.6e-82	100.	hypothetical protein SOVF_0034...	[more]
gi\|731342168\|ref\|XP_010682265.1\|	1.4e-56	72.2	PREDICTED: probable E3 ubiquit...	[more]
gi\|645230365\|ref\|XP_008221903.1\|	1.0e-38	60.6	PREDICTED: RING-H2 finger prot...	[more]
gi\|596202066\|ref\|XP_007223707.1\|	3.9e-38	59.2	hypothetical protein PRUPE_ppa...	[more]
gi\|568860907\|ref\|XP_006483954.1\|	3.9e-38	55.9	PREDICTED: probable E3 ubiquit...	[more]

BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S3M5_SPIOL	1.8e-82	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C6U0_BETVU	9.9e-57	72.2	Uncharacterized protein OS=Bet...	[more]
A0A061E8K8_THECC	2.7e-38	61.5	RING/U-box superfamily protein...	[more]
A0A067H3V9_CITSI	2.7e-38	55.9	Uncharacterized protein OS=Cit...	[more]
M5XHD4_PRUPE	2.7e-38	59.2	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
XERIC_ARATH	3.4e-18	35.9	Probable E3 ubiquitin-protein ...	[more]
RHA2A_ARATH	8.4e-9	53.3	E3 ubiquitin-protein ligase RH...	[more]
ATL33_ARATH	8.4e-9	46.1	RING-H2 finger protein ATL33 O...	[more]
RING4_ARATH	2.4e-8	47.8	E3 ubiquitin-protein ligase At...	[more]
RHA2B_ARATH	7.1e-8	51.1	E3 ubiquitin-protein ligase RH...	[more]

BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G67856.1	2.6e-32	45.7	RING/U-box superfamily protein	[more]
AT1G24580.1	1.4e-25	46.6	RING/U-box superfamily protein	[more]
AT2G04240.1	1.9e-19	35.9	RING/U-box superfamily protein	[more]
AT3G61460.1	9.6e-11	31.4	brassinosteroid-responsive RIN...	[more]
AT1G15100.1	4.7e-10	53.3	RING-H2 finger A2A	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 105..148 score: 1.5
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 106..147 score: 3.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 106..148 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 104..149 score: 1.3
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 105..149 score: 6.7
None	No IPR available	PANTHER	PTHR14155:SF110	RING/U-BOX DOMAIN-CONTAINING PROTEIN	coord: 105..149 score: 6.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 105..150 score: 4.24

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding