Spo04527.1 (mRNA) | SpinachBase

Overview


Name	Spo04527.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA-binding family protein
Location	chr2 : 3265528 .. 3279419 (-)
Sequence length	2923

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTGCCGGTATTCATCCTTATCACCACCAACAATGGCCACCTGTTCCGGCTCCTCCACCACCTCCTTCCACCGCCGCTCCTCCTCCTCTTCCTCCCCCAAACTCTGTCGTTCCTATGCCACCGCCGCCTCATCCTCCTCTCGATAATCGCCTCTGTGATGATGTCATTTTCTGTCTCGTACTTTTTATTTTTTTTAAAGAACACATTTTTTTGGTTGATTTTTGACTTGACAATGTACGAATAATCTTTTTGATGGATTTTGAGCAGGTGAGGACGATATTCATTTCGGGATTACCGGAAGATGTGAAGGAGAGAGAATTGCAGAATTTGCTACGGTGGTTGCCAGGTTACGAGGCGTCTCAGATTAATCAGAAAGGCGAGCATCCTATGGGATTTGCTCTTTTCTCTTCGCCTGAGTTTGCTCACGCTGCTAAGGATGCGCTTCAGGTGTTTTTTTCTTCCAATCTTTTATCATTTGATTTGTGTTTTGATGTATCGAAATCGTTGATTGTTTGTTGTTGTTTGATTTATTTTTGGTTCCGTGTTTGTAGAATATGGTTTTTGATGTGGATTCAAAGTCGGTTTTGCATACAGAAATGGCGAAAAAAAATCTTTTCGTTAAGAGAGGTTTGTGTTCGATTCTACATTTTGGTTTGTTGTTATGGTGGTTTATGTTGGCTAAATTAATCTTGATTGATAGATTATGAGTTGTTTGTACCAAGGAGGTGAGGGGGGATAGGAGGAAGTTTATGTATAGGATTATGGCTTGTTGTCGTTTTTTGGTCGAATGGAGAATGTGTAAAGGTTAATTTTGCGGCTGTTCGTGTTGTAACAAGTTTATGTTAGGTTTAGATATATGCAATTCTAAAGAAAAATCCTTTGGAAAGGTTTAGTGGTTAGTAGAAGGATTACTTTGTCATTGGAAAGTCTGACTTTGGTCTTTAGTTGAGTTCAAATGATGAACAGCTTTGTTCATTTACATCCTCCACAAGGAAAAAAACTTAAATGGAAATACTTGGAATAGGTTTGTTATTGCGTAAGGAAACTATATATAAGAGCATGACCAATGGCTAGCAACAAAGGTTGTTGCTTTGTTTTGCCACATCATTTCCAAACTGCTACCCAATTTCAAGCTACGACTTCTCTTATGGAATACCACTCGTACTTGTAGTTGTTGTAGATCCCACATGTCAATCATCATTTCAAATTAGTACAATATAATTTCATAATGATGTATGGTGGGGACCAAATATGGTGACAATAACAACAACAAAATGGCAAGTGAAACTGTGAAACACACTTTCCCATCTACACCATGTGTGTAGTACAATTGAGAGGAGAATGAGTTATTGTTTTTCTCAAAAACAAACACCAAGCTACTGGCTCCATAAAACTACAAGGTTTTGTAGAGCTACAAGTTTCATTCTTCCGCAATGGTTGAGCTTGTAGCTCTAACAATTTAATATCTGCTAGCAGGTCCTTCTTTTCAACAACTGATGATGCTCCAATGTCCTATTGACGTTGTCTATTTACTAGATAGTGGAATTTTATTGATGAATTGTTGCATTATATTCTTTTTCCCCCTTTTTTGACCCTTTAACAATACCAAGACAACAAGGCCCTGATATGGATCTGAAGAGTAGTAGGAGTATCCTCTTTAAATATTATAACCATCAAAACTAATCAAGGATTTTAGATTTTTGTCCAAAATATCATGCATCACACCATCTGTTTGGAAGGATGGAGAGGAAAAGGAGTGTTCTTTGATCCACCCAAATTGGTGAATACATTTAGATACGGGTGACATGATCAATACAACATGGGGAATCGGGGATTGTAGGAACATTCTGGATACTGAAATGTGTTATGGTGACATGATCTATATGATACGAGGATGCAGTGTTAGAACATTCTGGATACTGAAATGTGATACCACTTGTAAGGACATCTTATTTGATAATCTATCATATTAAGATAGTAAATGGGCCAAGGCCAACTGTTCCTACATCCGTGATTAGTCTTTTTTTTAAAAAAAATCTGTTCATTTTTTTGACAGATTGTGCTCCTGTTGGGATTTGCATGTATGTTTTTATGGATTATGGGTTAAGGAGTACAAGTTAGGATGCAGTACGTTTCTTAAAACTTCCATTTGGAACAAATGTCTGGCGTATATGTAAATAGAAAGTTTATAGAACATATCTGGTAGAAAATAAATGCATCATTTTCTTTTGTTTCTATGTTTTAGCCTTTTAGGAAAGCAGGAAGGTTTTATATCGATCAATTATTATAATATACATTGTTTAATCTTTGAAGAATTTACAGCCATCCTCTTTGTCTTTTACATAGAGGTAGGGTTTACCCAGTGTTTAAAAAAGCGCGCTTAAAGCTCGCTTAAGCGCTGAAGCTCGAAGCTCTAGGGCAAAGGGCTTAATTAGGTATGAGCGAAGCGTTTGTGAAAAAGCGCACCGAAGCGCACTTCAGCGCATGAAGCGCAAAAAGCGTATGAGCTTCATTGAAATTCTTCTTCTTTTTAATTCACATTAAAAGCTTTTTTTTATATGTTTGTTATTGTCTATTGGACCACATCCTATAATCCTTAACAATAGAAAGTGGGCCAAGAGTCGAAAGAAAAGAAAAAAAGAAGATGACATATCATTTTGAAAATAACATAGTATATTTGTTTCCTAGAAGGTCTTTCATTCCCTTTCTCTCTACTGTCTTGTACTGTTGTGTTTGATAAGTGATACGAAGTATAAACTACTCTTGCTTGCTTGCCAAAAAAAATAAAAAAATAAATAAGAGCATAAAGCTGGTAGAAAAAGACAGAGCTAGTGAAACGAGGTGTTAGGGTAGGTAGTTTGTAAAAGGAAAAGATAGTGGTAAACCCAGTGTTTAAAAAAGCGCAAAGCGCACTAAAGCGATATGAGTCCTAGAGCTTAAGCGTAAAGCGCAAGCGCAAAGCGCGAGCTTCATCTAAGTGAAGCGCACTTTTTAAGAATTCAAGGTTTCTTTACCATTATAGATATATATCTTACTAAAATAACCACAAAAATACATAAGCATCAGATTTTCTTCCCTATTGCTCCTTGTTTTAACAAAATAAAGAATACAACATAGTGTTTATCAAGGCTAAACTTACCCTACAAACTGCCCCTAGTAAGCCCAACAAACTGAGCTTACATAAAGAGAAACATTACAACTCCTGAAACCAGTTTCTACCATAATATCCTTGATCCTGTGCTTCACCTCAAACTGAATAAGCTGGACTGTAGTTGCAGGGGTAGGAACCACATTTCTCCAAACTGCAGAATTTCTGGGTAACCAGATGTGATACACTAGGCAGGCCATTGTTGCATAAGCCACGATCCTTCTGAAATTACTCTTGCTATACTTCCTGATCCAGTTCAGGCCATGAAGTTTAGTCCACCTACTATGAAAACCAAGCCAGGAGAAGACAACAGACTTGCAAGTAACACTGAAGTGACAGTCAAAGAAGAGATGTGGGATATCCTCTGCTACATTTCCACATATAGCACAAGAGTTGGAATCACACACTCCAATCTGGTGTAACCTTGCTCTAGTCTTAAGTCTGTCCAGTAGAGCAAGCCAAAGAATCACCCCTATGTTTTGGGACAGTTAGTCTGTTCCAAACATATTTGCACCACTGAGCTTTTGGGAGACTAACACTTAGCTAAGAGTACATATCTCTGATAGAGTACTTGTAAGCTGTTAGCCATTGGTGAGACTGCAATCTGGTATTGCAATGGTTAGATGCATTTAAATGCAGTCTCCTCTTATTGTCTGGGATTTTAGATGCATTTTTGAATGCCTGATTTGTATAGAAGGTATTTGGGAAATTTGATTATTGGACAGGAATACAGGATAGCAATTATTTTTGCAATTTAGCATTTAAATTATAGGTCCACTAAAAAAGTGGGATTGCTACCATCGGTACCTTATGCCATTTAAGCTGTCAATGTTAAATGTTTGTGTTTTTCCTTTTGTTAGATACTTCGTATACATTGCAAAAGCTGATTTGGCATCCAAAGTTCTGATACTCTTTGCTTCATTAAAGTTTGTGGTTTGATTTAGTGGAGATACTATGAAGTCACTTAAAAGTTTGTTGACATAATTATTATACTCAAAATATTAACTTTTACATCCTTACTGCTATACCTAAAAGAATGACACCATGCCTTTATTTTACTACGTACTTCGTAATTGTTTGTTATGCTTAAATCAATTTTCTACAAGAAAATCAACAAAGAAGCGAGTGCAAATTTGACCTCTGTTTTTTTCACCTATAAAAATTAGGTCAAAGACTCATAAGTTTTGACTAGTTCAATTCAAATGCTACTAAGTTCCAATTAGTTCAATTAAAGACTACTAAATGTAAGTACTATCAAAAAGAAATTTCAGTTAGGAAGAAATAAGTTCAACCATTTAGGGCAAATGGGTTTAGATGAGTTATAAGTTCAGTTCAGGGATATAAACTAAGGATATTTAGGTGAAATGAACGAGATGTTAGTATAAAGAAATTCAGTTATTGGGAATATATGATAGAAATATGATTTTAAGATGATAAGAGATTAAACATTCTCATATACATGGTGAAACTTTTTGAATTGAATAATATGTTTCTATGCTCAAACTTGATTAGGTTGAAAGATGTTAATTTCCTCTACGCTATCTTTGAACAATTGAACCTTTTTGACTTTTTCCGTCTAACTTCTATGGGAAACTTCCCATGTAAAAGAGGGATGCTTAGCTAGAAAGAGCGATGATAGAATTTTACAGAATTAAAAATTGTTAAGAACACTTTTAATTTTTCTTGTAATCACTGTAGATAATTGCTCGTCTTATTCATACTCTTTTCAACTTTCTTTGTGTCTTTATCACCTTTTTCTTCCTATCCGCGGGGGAGGACTGCTGTTGTGTTTGTATTGTTTAATAATCTTCTTGTTCACTCGTCTGCTTGTAATAGGTATTGTAGCAGATGCAAATGCTTATGACCAAAGTAAACGTTTAAGAACAGGTGGTGACTATACGCATACTGGTTATGCCAGTCCATCACCATTTCACCCTCCAGCACCTGTTTGGGGACCACATGGGTAGGTTTAAACTTTGATTTTTAGTGAAAGCAATGGCTTGTGAAAGTGTGAAACAATTATCAGTTATTAGTTATTAACTGACTCCATTTCTATGTCTTAGGTATATGGCTCCCCCTCCCCCTCCACCATATGATCCATATGGAGGATACCCTGTACCTCCAGTTCCCATGCCTGCTCCTGTACCTGCACCAAGTAGCTATGTTCCTGTGCAGGTACTTTCTCTTTCACTTACACCTCGTGCATGATACTAAACAATAATGGAAATCGTGGCAAGTATTTTCAATTTGACTTGTGTATTATGCTTATTTTGGTATAAAAACCTACTTCGATATGGCTATAGTCACTAAGCTTACCTATAAATATTGAATTTCATCTATAGTACATTCTTAGCAGCCTTGATGAATGTTTACAATTTTAAATCTTTTAACCTAATATTAAAGCGTCAAAAGTGCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCAAGTTTAATGTATAAAAAGTCTCGGTTAATTTATTATTAGCCTTACAAATGTTTAGACCTTTGTTTCATGATAAAATACGAGAAGTTTAAAAATTGCCCACCTCCCTCTCTCCAAAAATGTATAATTTGTGGACTATCAAAAATATGTTCAGCCACATGACTGCAACATTGAAGTCTACATATCTCATGTAATACTGTAGAGAATCTAGAACTTTTGTGTACGGCCGACGTTTGCTTGAATACAGAAAATGAAAACGACTGCAATTTTATTATTGTGGTGCCTATTTCATTCTTTGACTTACCTAGGTGAATGGAGACCCATGGCTAATGCTATTGCAGATTCTTAAACACAATCATATGACTGCAACATTGAAGGTTAAATATCTGATGTAGTACTGTAGAGAGTCTGGAACTTTTGTGAGCGGATGACCTCTGCTTGAATACAAAAAACTGAAAACGACTAAATTTAATTATCGTGGTGCCTATTTCATTCTTTCTTTTATCTAGGTGAATGGAGACTGATGGCTAAAATTAAGATATATTTTTGAGTGATATGAGATTGTGAGGTGCTTTTCTCTGTATATATATAGTTCAACTATTTCTGCCGAAGTCTTGTAAAAGGATTTTCTTTTGAAGTCGCCCACGGCGCTGTTTTTCCTATGTAGTCTTAACCCATACATACTAATATTTGTGCTTAAGCGTTTTTATTTATTTATTGTTTTGGAATGTCAATTAATTTCCTTAGGACTTTATGGATTTCTTTTGATGCGAAACGTCGACCTAAGTTGATGATCAGGTGACAGAAGCGCCGCAAGTCATGGTCAATGGTTACCTTTTGTGGTTACAACGCCGTTGATGGTTATTTAGGTGGTCGCTATTTTGGTGTGACCATAGTTCCCCTTAAATAGGTAGATTTTCACGCTTTGATTGCCAGCAAGGGTTGGTTTTGAGTTAACAAGATGATTGGAAGATTTAGGAAAGAGTTTGGGAGCTAAAATGAGCAAATAGGGCCTTGCACGACTGTGTCGTCGAGCTATTTTATTTTCAACAATCCAGAATGGTCATTCAAAATGGCACGCTCTTGCCAAAGCTGCACTTGATAGTCGCACGATTAAGCAACACACCAATAGGATTCTCAAGCTCCACTTTACCGTCGTATAGTTGTCGCACCATAGTGCAATATACACTCCTTTGTTATTTTGCAATGGGTATTTTTTTTCCTAACAATCAAGATCCAAGTATTGTTAAACTTTTGACTTTAGCTTGATTGTATTCTAATGGCCCTTATTTGGGGGTCACTTTAAGCTATATTAGCATTCCGATAATTATAATGTATGAGGGAACATGCCTGTATTCTTTTTGTTGAATTAAATATATGACAATTTCTTTCTCTTTAGTACTTTGTAAACTTTCCTGCGCAAAAAACGTGAAAACTCTTGAACTTTCCTTTGTGGTATTTGGTAAACCCTTGCTTATTTGATCTCTACTTCTGTGTTTAATTTGTAGCTTAGTTCTAGAATAGTGGTCATCTTTGTGCTAATCTCTTTTCAAGACCATATTTTTTTTCTTCTTCATGCAATCCAATGGAAACCCCAAAAATTTTGTTCCAAACATCTGAAATTTCTTGTTCGTGGATTATCAAAAGTAGTATCAAGAACTAAATGTCGCCTGAATATAAGGTTTACACCAAATATGCCACCGTAAGCTAAATTTTATACCCTTATGTCATTGTTGATAACTTTTATATCAAAGTCGCAAAAACCGAAAAGGTGCTATGTTCTGTACCAATTTGGCTAATTAGCCTTCTTGTTTATAGTGGCCAATCTGGTAACATAAAAATATTATTAACGGTGGTTGCAGCATGTTTCTAAATCATACCTTACATAACGACAAGTCCAAAGTCCGTTAAAGAACTGCTTTGTTTTATTTGGTACACAATTGAGTTGTCTAGCTGTCTTTGTCCTGAATTTCCTTTCAAGATCATACCATAAGTCCTTGTTGTTCATGCAAGCCCTTGAAAAACCCTAAAATATTTGTTTCTAAAATCTGAGATTTCCTGCCGTAGCTCGTGCCGGACAAACTTTATCTGTTGCTTCTTGGAAATAGGAATCACCAAGTACTGTATTTTTTAAATAGTTTTCAAGTGAAGTTTCCAATTTTTTCTGTATATCTTGCTTTGCGTAGCTAGCACTATCTCTCTTGTTCTCATTACTATTTTTTGTTGATCTGCAGAACACAAAGGATAACCCTCCTTGTAATACCTTGTTTATTGGTAACCTTGGGGAGAACATTAACGAGGAAGAGCTAAGGGGTTTGTTTAGCATGTAAGCTTGTCTCTTCCTTGTTTAACTGCTATTTTAATTTCTTTTTCCATTAACTCTTTTGGTGGGGGGGGGGGGGGGTGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGAATCGTTGCTCTTAGTGTAGATTCCATCAATTACCTAGACAGCAATGTTAGTTACCCTCAGACTCTCAGAGCCAATCTCCGGATTGAACAAATGTCCCCTGCCAGAAAACAGATTCATACTACCCTCCTTGGCACATTGCTCAGAGGATTTACAAAAGAACCTATGTCTTTTGTTCATGAGTGAAATTATATTTAAGGTTTTACAGAAGATTTGTACAAAGGATCCGTGAGTGAAGCAATGTGGTAGTGTATGGGCATGCGCTCATGGTTAATTTAAACTGTTTTAAGTTCCTGGCAGAAATTCAGGCCTTAAAGATATGAATGACAGATTAGTCTGAACCTCTTGTACCAACGGAACCGAAGTACCTGTGAACAGATTTTTTTAACGTAGATAGCGAATGGAATTACCGAGGTCCTTTGGTTTGCCAGTCCTGTGTGTTCTGCCTAACTGGTTAACTATGAATTGCACTGAGGATCTAGTGCATTTACTGTTATCTGATACATGTGCTTTTATCGTATATGTTAGGCTGTTGTAATGTTTACCCTTGCTTTTTGATCCAAGTGTCCTTCTGAATCAGCTCTTTTTTTCATGTACTTCCTCTGTTTTTTAATACTTGCAACTTTTGACTTAGTCTCAAATATCTTTTCGAAATATCATTTTATGATTTTTAAATAACAGTTAGAGATATTGATAGTCAAAGTTAGGCATTGGCAAACATGAACTTCAAAGTTTTGCAAGTATTAAGTAACCTAGGAAGTACAAATTATGTCTACAGCACATGAAGGGCATACCTTCCGGCAAGCTACCCCCCCTTCCCCCCATGTACTCATAACTTGATTCCTCGTTATTGGGTGATATCTTGGGTCGGAGGGTTTGAGAATCGCTATATGTTTAGGGCACAGCACACATGTAATTATATTTGTCTTTAAATGTGGAATGTTTTTAATTTATTTCATGTGCATGTGTTCAATTTAAGGTGTAGAAGGTTGTTCAATATTGACGCCTGGGATTTTCCGAATATTGACTTTTTTCTTTAAATACCCTGTTTTATTCATGGGTTCATGTGTGCAGACAATCAGGATTTAAGCAGATGAAGGTTCTGAGGCAGGAAAGACACACTGTTTGCTTTATTGAGTTTGAAGTAAGTGTTCACTACAGAGGTTGATTGGTTTCTTGTGTCATCATTTTCCTTCTGTTTCACTTCTTGCAATAAATACTGTATTCTTCTTTGCAGGATTTGAATAGTGCTTCTCATGTCCATCATAATCTACAAGGGGCTGTTATTCCCAGTTCTGGCTCTATTGGCATGCGTATACAATATCCTTTCTTTTGTTTATCATGCATATTCAGCTCTTGATTATGTGAAATATTTAGGTTACAGTTTCTGTAATTTTAGGAATTTCATGTTTGGTTTACCTCATGTCTGTTCCTCGTGGAATCCTTAGTTTCTTGCATTTTGGGCATTTAAGTATTTGGGTAGGCTTGGATTGTTCGTGGTCTGGGTTGGTGAGGTTTAGTACCCAAACCAAACTAGACCGCACCAAAGTGTTACGGTTTGGTGCTGTATGGTTTGTGGTTTAACCACATTTTTAAAAAAAATCACGTAAAAATAACACTTTTTTTTTGGTGACTATTATAAAACTCATAATGGATGTTTGAGACTATCTTACTTGGAAACATTAGTTTATTTTTCATTTTATTTTATTTATATACATATCTTTTAGATTAAAATTGGATGACTTAGACTTGTTACTGGCACATATTGTAAATTTATAAACTTTGAATACGTGGTTACAGTAGGTTTATTTTATTTTTGATTTGTTTAACTAAAAAAATGATAAAAATGGTGCCTGGTTTAATGAGGTTTGTGGTGCGGTTTGTTTCACAATTTTTGAAACATCTAATCCGTTGCAAACTGGGGTCTGGTCAAAATCTCAACCATTCCGCAATTTTTTCAGATTGCAACAGAAACTGCAAAATAACGGTTTGGTCGTGGTTTACCGCACTCTGAACAGCCTTTGTAAGGCAGTTGATTGCTTGATGTAATTTTGTTTGAAGGCATGTCTCCACTGCAATGATCATGAATTACATTTGCTTTTTTCTTTTCGTATTTTATGGCTATCTGTGTATTATAATTTGTTTTGATTAAAGTTTCTTCACCATTTTGCCTTTTTCATTTAACTCATTCATTTTTCTTGACTTTGAAACGTATTCGAAGAATCCCTATGGTAAGCGGAAGGATTCCAATCATTCTGCTGCTGCTATCAATGCTGCTGCTGCACCTATGAATACCATGAGTGGAGCTGCCCCACCTATGACTTACCAGTAGTCCGAAGGGGATGTACTCTGTTTTTAATGGTCCAAAAATGCAACTACATGATAAGATGCATCATGCAGCAGTTACACACATCCATTTCATCAGCATTAGCATTTCTTCTCATGTGAATGAATACGCATATTGACATCATGAATGTACCATTGAGCCATATTGTTTCTTGACATCCGATATGCTTCTTCTCCGCATATTGGCATCATGAATGTACCATCGGGCCATGTTTTTCCTTGGCATGTGATATGCATTTGAAGAAGCATCCTAACTGCCTTGATGACATCATAGATATCACAGTTTTTGTTTGTTGTATTACTGATGCATTTCCTGTTGTAGTTTTATGGATGTGTGTGTTTAATGTTCATATTGACCATGCTATTGATTGAATAAAACATAGATGGACTGCCAAGTCATGTAGCTGGAACTTGTGCTCTTGTAGTCTTGTGTGACATTTCATGGGCATGAAGTTGTGATATAGGAAGCATAGGAGTTCACATCACTGATCATGATTGCTTTGCAATCCATTGCCATTATCATTGGCATCATGATTCATTTATCATCAACCCTATCGATCCATCATCTCTACTGGTTCAAACAGGAGATAAACATACATTTCAGTCAGGGTTTAGGCTCTTCTATCAAAAGAATTTATGCTTGAGAATGTTGTTCTCGTGCAGTCTATTTCAGTCAGTTACTAATGATATTATTGCTTTGTGTTCAAATGATCGCTGAAGCTCATTTTTCAGGTAATCATTCTGGAGTTTCCTGGGATAATATGTTAAAGTTCTTTTGATCAAGTGAATTACTTTGGTAGTCTCGTAGTTTATGCAGTTCAAGCACTCATGGTCTTATGAGCTTCTGTTTGGCTGTTTTTGCTGAGTTCTGTTGGGTTTTGGATTGATTATTGTAGTTTCAACTTTGTAAGAGAAATGTATTTAGTCGCGAGAGTGATAACTTGAGGACCGGCTGCTATTTTGTCTTCCGTACTGTTTGACAACTATAACTTGTATTTTCATTTTTGCTTTTGGAAGGTAAATTGGACTCTTAAGCTGTCGTATGTTACGATTTGACTTAGGTAGTGGTGGTGCATGCCTCGGCATTGTGCATGTGTGTGAAGTAAGACCTGTTCTACAGGCCGGGTTAGGGCTGGACTGGGCTGAAGCTAGAATCTAAACAAAGCAGCCGCAAAACTTTGAACCACCGCCCTTCCCGTTCCCCTCTCCAGATCTGATTGTTTTGGATAGATTTTAAGTGTTGGAGTTTGCTTGTTTCATCTTCAATCAAGTGGTTTCTTCCAAAACTCGACAAGGTTGAAGCGTTATTTGCTGAAGACAAGGTTGAAGATGATACACATGAGCAAGGTTTGGTTGAAATTAATTTAGAGGAATTACTTCAAAAATTGTTCATGAAAAAGAGGAGAGAGAAAGTGGTGAAAGCAATGAGTTCTGGTCTTCTTTGCCTTCCTTGAATTCTCTTTTTTTATTTGTGTATAATTTTTTATCATCTTGTTTAATTAATCCATTCAGCAAATAAACCTATAAGGGCCCAATCCACCCATTAAACATCAACCCTTTAAGATCCCAACCCATTTACTTCGTATAAAAATAATGGGTTGAACCCATTTTAAAATGGCCTGCACTCGGGCTTTTAATGGGCACCCAACCCGTTGAACATGTATGTGAAGGCACAAATGCGACTGCGTGTAGCCAACCCTCGATCTTTAGAAAGGCTCTGCGTAAAGCTTTCACTTCCATTCACATTCCTTGGGGAATTTCATTGACAATGTAATGATATGAAAATTTCTCTGGCAAGCTGGTACACGAGTAACTAATTGCACATGCTAAAGTATTTTTTGAACCTGAGCTGTTTGGCTATTGAC

mRNA sequence

ATGGCGGGTGCCGGTATTCATCCTTATCACCACCAACAATGGCCACCTGTTCCGGCTCCTCCACCACCTCCTTCCACCGCCGCTCCTCCTCCTCTTCCTCCCCCAAACTCTGTCGTTCCTATGCCACCGCCGCCTCATCCTCCTCTCGATAATCGCCTCTGTGATGATGTCATTTTCTGTCTCGTGAGGACGATATTCATTTCGGGATTACCGGAAGATGTGAAGGAGAGAGAATTGCAGAATTTGCTACGGTGGTTGCCAGGTTACGAGGCGTCTCAGATTAATCAGAAAGGCGAGCATCCTATGGGATTTGCTCTTTTCTCTTCGCCTGAGTTTGCTCACGCTGCTAAGGATGCGCTTCAGAATATGGTTTTTGATGTGGATTCAAAGTCGGTTTTGCATACAGAAATGGCGAAAAAAAATCTTTTCGTTAAGAGAGGTATTGTAGCAGATGCAAATGCTTATGACCAAAGTAAACGTTTAAGAACAGGTGGTGACTATACGCATACTGGTTATGCCAGTCCATCACCATTTCACCCTCCAGCACCTGTTTGGGGACCACATGGGTATATGGCTCCCCCTCCCCCTCCACCATATGATCCATATGGAGGATACCCTGTACCTCCAGTTCCCATGCCTGCTCCTGTACCTGCACCAAGTAGCTATGTTCCTGTGCAGAACACAAAGGATAACCCTCCTTGTAATACCTTGTTTATTGGTAACCTTGGGGAGAACATTAACGAGGAAGAGCTAAGGGGTTTGTTTAGCATACAATCAGGATTTAAGCAGATGAAGGTTCTGAGGCAGGAAAGACACACTGTTTGCTTTATTGAGTTTGAAGATTTGAATAGTGCTTCTCATGTCCATCATAATCTACAAGGGGCTGTTATTCCCAGTTCTGGCTCTATTGGCATGCGTATACAGTATTCGAAGAATCCCTATGGTAAGCGGAAGGATTCCAATCATTCTGCTGCTGCTATCAATGCTGCTGCTGCACCTATGAATACCATGAGTGGAGCTGCCCCACCTATGACTTACCAGTAGTCCGAAGGGGATGTACTCTGTTTTTAATGGTCCAAAAATGCAACTACATGATAAGATGCATCATGCAGCAGTTACACACATCCATTTCATCAGCATTAGCATTTCTTCTCATGTGAATGAATACGCATATTGACATCATGAATGTACCATTGAGCCATATTGTTTCTTGACATCCGATATGCTTCTTCTCCGCATATTGGCATCATGAATGTACCATCGGGCCATGTTTTTCCTTGGCATGTGATATGCATTTGAAGAAGCATCCTAACTGCCTTGATGACATCATAGATATCACAGTTTTTGTTTGTTGTATTACTGATGCATTTCCTGTTGTAGTTTTATGGATGTGTGTGTTTAATGTTCATATTGACCATGCTATTGATTGAATAAAACATAGATGGACTGCCAAGTCATGTAGCTGGAACTTGTGCTCTTGTAGTCTTGTGTGACATTTCATGGGCATGAAGTTGTGATATAGGAAGCATAGGAGTTCACATCACTGATCATGATTGCTTTGCAATCCATTGCCATTATCATTGGCATCATGATTCATTTATCATCAACCCTATCGATCCATCATCTCTACTGGTTCAAACAGGAGATAAACATACATTTCAGTCAGGGTTTAGGCTCTTCTATCAAAAGAATTTATGCTTGAGAATGTTGTTCTCGTGCAGTCTATTTCAGTCAGTTACTAATGATATTATTGCTTTGTGTTCAAATGATCGCTGAAGCTCATTTTTCAGGTAATCATTCTGGAGTTTCCTGGGATAATATGTTAAAGTTCTTTTGATCAAGTGAATTACTTTGGTAGTCTCGTAGTTTATGCAGTTCAAGCACTCATGGTCTTATGAGCTTCTGTTTGGCTGTTTTTGCTGAGTTCTGTTGGGTTTTGGATTGATTATTGTAGTTTCAACTTTGTAAGAGAAATGTATTTAGTCGCGAGAGTGATAACTTGAGGACCGGCTGCTATTTTGTCTTCCGTACTGTTTGACAACTATAACTTGTATTTTCATTTTTGCTTTTGGAAGGTAAATTGGACTCTTAAGCTGTCGTATGTTACGATTTGACTTAGGTAGTGGTGGTGCATGCCTCGGCATTGTGCATGTGTGTGAAGTAAGACCTGTTCTACAGGCCGGGTTAGGGCTGGACTGGGCTGAAGCTAGAATCTAAACAAAGCAGCCGCAAAACTTTGAACCACCGCCCTTCCCGTTCCCCTCTCCAGATCTGATTGTTTTGGATAGATTTTAAGTGTTGGAGTTTGCTTGTTTCATCTTCAATCAAGTGGTTTCTTCCAAAACTCGACAAGGTTGAAGCGTTATTTGCTGAAGACAAGGTTGAAGATGATACACATGAGCAAGGTTTGGTTGAAATTAATTTAGAGGAATTACTTCAAAAATTGTTCATGAAAAAGAGGAGAGAGAAAGTGGTGAAAGCAATGAGTTCTGGTCTTCTTTGCCTTCCTTGAATTCTCTTTTTTTATTTGTGTATAATTTTTTATCATCTTGTTTAATTAATCCATTCAGCAAATAAACCTATAAGGGCCCAATCCACCCATTAAACATCAACCCTTTAAGATCCCAACCCATTTACTTCGTATAAAAATAATGGGTTGAACCCATTTTAAAATGGCCTGCACTCGGGCTTTTAATGGGCACCCAACCCGTTGAACATGTATGTGAAGGCACAAATGCGACTGCGTGTAGCCAACCCTCGATCTTTAGAAAGGCTCTGCGTAAAGCTTTCACTTCCATTCACATTCCTTGGGGAATTTCATTGACAATGTAATGATATGAAAATTTCTCTGGCAAGCTGGTACACGAGTAACTAATTGCACATGCTAAAGTATTTTTTGAACCTGAGCTGTTTGGCTATTGAC

Coding sequence (CDS)

ATGGCGGGTGCCGGTATTCATCCTTATCACCACCAACAATGGCCACCTGTTCCGGCTCCTCCACCACCTCCTTCCACCGCCGCTCCTCCTCCTCTTCCTCCCCCAAACTCTGTCGTTCCTATGCCACCGCCGCCTCATCCTCCTCTCGATAATCGCCTCTGTGATGATGTCATTTTCTGTCTCGTGAGGACGATATTCATTTCGGGATTACCGGAAGATGTGAAGGAGAGAGAATTGCAGAATTTGCTACGGTGGTTGCCAGGTTACGAGGCGTCTCAGATTAATCAGAAAGGCGAGCATCCTATGGGATTTGCTCTTTTCTCTTCGCCTGAGTTTGCTCACGCTGCTAAGGATGCGCTTCAGAATATGGTTTTTGATGTGGATTCAAAGTCGGTTTTGCATACAGAAATGGCGAAAAAAAATCTTTTCGTTAAGAGAGGTATTGTAGCAGATGCAAATGCTTATGACCAAAGTAAACGTTTAAGAACAGGTGGTGACTATACGCATACTGGTTATGCCAGTCCATCACCATTTCACCCTCCAGCACCTGTTTGGGGACCACATGGGTATATGGCTCCCCCTCCCCCTCCACCATATGATCCATATGGAGGATACCCTGTACCTCCAGTTCCCATGCCTGCTCCTGTACCTGCACCAAGTAGCTATGTTCCTGTGCAGAACACAAAGGATAACCCTCCTTGTAATACCTTGTTTATTGGTAACCTTGGGGAGAACATTAACGAGGAAGAGCTAAGGGGTTTGTTTAGCATACAATCAGGATTTAAGCAGATGAAGGTTCTGAGGCAGGAAAGACACACTGTTTGCTTTATTGAGTTTGAAGATTTGAATAGTGCTTCTCATGTCCATCATAATCTACAAGGGGCTGTTATTCCCAGTTCTGGCTCTATTGGCATGCGTATACAGTATTCGAAGAATCCCTATGGTAAGCGGAAGGATTCCAATCATTCTGCTGCTGCTATCAATGCTGCTGCTGCACCTATGAATACCATGAGTGGAGCTGCCCCACCTATGACTTACCAGTAG

Protein sequence

MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDVIFCLVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDALQNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHPPAPVWGPHGYMAPPPPPPYDPYGGYPVPPVPMPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVIPSSGSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo04527	Spo04527	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo04527.1	Spo04527.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04527.1.CDS.9	Spo04527.1.CDS.9	CDS
Spo04527.1.CDS.8	Spo04527.1.CDS.8	CDS
Spo04527.1.CDS.7	Spo04527.1.CDS.7	CDS
Spo04527.1.CDS.6	Spo04527.1.CDS.6	CDS
Spo04527.1.CDS.5	Spo04527.1.CDS.5	CDS
Spo04527.1.CDS.4	Spo04527.1.CDS.4	CDS
Spo04527.1.CDS.3	Spo04527.1.CDS.3	CDS
Spo04527.1.CDS.2	Spo04527.1.CDS.2	CDS
Spo04527.1.CDS.1	Spo04527.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04527.1.utr3p.1	Spo04527.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo04527.1.exon.9	Spo04527.1.exon.9	exon
Spo04527.1.exon.8	Spo04527.1.exon.8	exon
Spo04527.1.exon.7	Spo04527.1.exon.7	exon
Spo04527.1.exon.6	Spo04527.1.exon.6	exon
Spo04527.1.exon.5	Spo04527.1.exon.5	exon
Spo04527.1.exon.4	Spo04527.1.exon.4	exon
Spo04527.1.exon.3	Spo04527.1.exon.3	exon
Spo04527.1.exon.2	Spo04527.1.exon.2	exon
Spo04527.1.exon.1	Spo04527.1.exon.1	exon

Homology

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BLAST of Spo04527.1 vs. NCBI nr
Match: gi|902219223|gb|KNA18250.1| (hypothetical protein SOVF_072300 [Spinacia oleracea])

HSP 1 Score: 678.7 bits (1750), Expect = 5.300e-192
Identity = 342/347 (98.56%), Postives = 342/347 (98.56%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDVIFC 60
           MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDV   
Sbjct: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDV--- 60

Query: 61  LVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDAL 120
             RTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDAL
Sbjct: 61  --RTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDAL 120

Query: 121 QNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHP 180
           QNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHP
Sbjct: 121 QNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHP 180

Query: 181 PAPVWGPHGYMAPPPPPPYDPYGGYPVPPVPMPAPVPAPSSYVPVQNTKDNPPCNTLFIG 240
           PAPVWGPHGYMAPPPPPPYDPYGGYPVPPVPMPAPVPAPSSYVPVQNTKDNPPCNTLFIG
Sbjct: 181 PAPVWGPHGYMAPPPPPPYDPYGGYPVPPVPMPAPVPAPSSYVPVQNTKDNPPCNTLFIG 240

Query: 241 NLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVIPSS 300
           NLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVIPSS
Sbjct: 241 NLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVIPSS 300

Query: 301 GSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           GSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ
Sbjct: 301 GSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 342

[Close]

BLAST of Spo04527.1 vs. NCBI nr
Match: gi|731351920|ref|XP_010687275.1| (PREDICTED: RNA-binding protein with multiple splicing 2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 554.7 bits (1428), Expect = 1.200e-154
Identity = 296/352 (84.09%), Postives = 307/352 (87.22%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDVIFC 60
           MA   IHPYH QQW  VP PPPPP+  A PP PPPNS +PMPPPPHP LD +        
Sbjct: 1   MANTNIHPYHQQQW--VPPPPPPPT--ATPPAPPPNSAIPMPPPPHPSLDEQ-------- 60

Query: 61  LVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDAL 120
            VRTIF+SGLPEDVKERELQNLLRWLPGYEASQIN KGEHPMGFALF++PEFAHAAKDAL
Sbjct: 61  -VRTIFLSGLPEDVKERELQNLLRWLPGYEASQINYKGEHPMGFALFTTPEFAHAAKDAL 120

Query: 121 QNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHP 180
           QNMVFD DSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTG DYTHTGYASPSPFHP
Sbjct: 121 QNMVFDADSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTG-DYTHTGYASPSPFHP 180

Query: 181 P-APVWGPHGYMAPPPPPPYDPYGGYPVPPVPMP----APVPAPSSYVPVQNTKDNPPCN 240
           P APVWGPHGYMAP PPP YD YGGYPVPPVPMP    APVPAPSSYVPVQNTKDNPPCN
Sbjct: 181 PPAPVWGPHGYMAPLPPPSYDAYGGYPVPPVPMPAPAPAPVPAPSSYVPVQNTKDNPPCN 240

Query: 241 TLFIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGA 300
           TLFIGNLGE INE+ELRGLF+IQ GFKQMKVLRQERHTVCFIEFEDLNSAS VHHNLQGA
Sbjct: 241 TLFIGNLGETINEDELRGLFTIQPGFKQMKVLRQERHTVCFIEFEDLNSASLVHHNLQGA 300

Query: 301 VIPSSGSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           VIPSSGS+GMRIQYSKNP+GKRKDSNHS AA  A AAP   M+GAAPPM YQ
Sbjct: 301 VIPSSGSVGMRIQYSKNPFGKRKDSNHSPAA--AVAAPTIAMNGAAPPMNYQ 336

[Close]

BLAST of Spo04527.1 vs. NCBI nr
Match: gi|590614966|ref|XP_007023092.1| (RNA-binding family protein [Theobroma cacao])

HSP 1 Score: 502.3 bits (1292), Expect = 6.800e-139
Identity = 271/350 (77.43%), Postives = 294/350 (84.00%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDVIFC 60
           MAGAGIHPYH QQWPP PAPPPPP+ AA  P PPP+  V  PPPP    D          
Sbjct: 1   MAGAGIHPYH-QQWPPAPAPPPPPAAAAAAPPPPPS--VHHPPPPASSHDE--------- 60

Query: 61  LVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDAL 120
            VRTIFI+GLPEDVKERELQNLLRWLPGYEASQ+N KGE PMGFALFSS + A AAKD+L
Sbjct: 61  -VRTIFITGLPEDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSSAQLAVAAKDSL 120

Query: 121 QNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHP 180
           Q+M+FD +SKSVLH EMAKKNLFVKRGIVAD+NAYDQSKRLRTGGDY+H+ Y +PSPFHP
Sbjct: 121 QDMLFDAESKSVLHIEMAKKNLFVKRGIVADSNAYDQSKRLRTGGDYSHSAYTAPSPFHP 180

Query: 181 P-APVWGPHGYMAPPPPPPYDPYGGYPVPPVPMP--APVPAPSSYVPVQNTKDNPPCNTL 240
           P APVWGP GYMAP PPP YDPYGGYPVPPVPMP  APVPAPSSYVPVQNTKDNPPCNTL
Sbjct: 181 PPAPVWGPQGYMAPTPPP-YDPYGGYPVPPVPMPTPAPVPAPSSYVPVQNTKDNPPCNTL 240

Query: 241 FIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVI 300
           FIGNLGENINEEELRGLFS+Q GFKQMK+LRQERHTVCFIEFED+N+A++VHHNLQGAVI
Sbjct: 241 FIGNLGENINEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHNLQGAVI 300

Query: 301 PSSGSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           PSSGS+GMRIQYSKNP+GKRKDS H  A+  A        +GA P MTYQ
Sbjct: 301 PSSGSVGMRIQYSKNPFGKRKDSGHPIASPGA--------NGAPPSMTYQ 328

[Close]

BLAST of Spo04527.1 vs. NCBI nr
Match: gi|1009152470|ref|XP_015894111.1| (PREDICTED: U1 small nuclear ribonucleoprotein A [Ziziphus jujuba])

HSP 1 Score: 502.3 bits (1292), Expect = 6.800e-139
Identity = 271/352 (76.99%), Postives = 291/352 (82.67%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPP---VPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDV 60
           MAGAGIHPYH QQWPP   VP PPPPP  A     PPP+     PPP      NR   D 
Sbjct: 1   MAGAGIHPYH-QQWPPAAQVPPPPPPPVAAGAAAAPPPHH----PPPILVDNPNRPATDE 60

Query: 61  IFCLVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAK 120
               VRTIFI+GLPEDVKERELQNLLRWLPGYEASQ+N KGE PMGFALFSS + A AAK
Sbjct: 61  ----VRTIFITGLPEDVKERELQNLLRWLPGYEASQVNFKGEKPMGFALFSSAQQALAAK 120

Query: 121 DALQNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSP 180
           D LQNMVFD +SKSVLHTEMAKKNLFVKRGIVAD+++YDQSKRLRTGGDY+H GY+SPSP
Sbjct: 121 DTLQNMVFDAESKSVLHTEMAKKNLFVKRGIVADSSSYDQSKRLRTGGDYSHAGYSSPSP 180

Query: 181 FHPPAPVWGPHGYMAPPPPPPYDPYGGYPVPPVPM--PAPVPAPSSYVPVQNTKDNPPCN 240
           FHPPAPVWGPHGYMA PPPPPYDPYGGYPVPPVPM  PAP+PAPSSYVPVQNTKDNPPCN
Sbjct: 181 FHPPAPVWGPHGYMA-PPPPPYDPYGGYPVPPVPMPAPAPLPAPSSYVPVQNTKDNPPCN 240

Query: 241 TLFIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGA 300
           TLFIGNLGENINEEELRGLFS+Q GFKQMK+LRQERHTVCFIEFED+NSA++VHHNLQGA
Sbjct: 241 TLFIGNLGENINEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQGA 300

Query: 301 VIPSSGSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           VIPSSGS+GMRIQYSKNP+GKRKD NH+  A      P        P +TYQ
Sbjct: 301 VIPSSGSVGMRIQYSKNPFGKRKDGNHAGIASAVGGTP-------PPALTYQ 335

[Close]

BLAST of Spo04527.1 vs. NCBI nr
Match: gi|568878037|ref|XP_006492013.1| (PREDICTED: RNA-binding protein with multiple splicing [Citrus sinensis])

HSP 1 Score: 500.4 bits (1287), Expect = 2.600e-138
Identity = 270/352 (76.70%), Postives = 291/352 (82.67%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDN--RLCDDVI 60
           MAGAGIH YH QQWPP PAPPPPP+ AA  P          PPPP  P DN  R+  D  
Sbjct: 1   MAGAGIHTYH-QQWPPAPAPPPPPAAAAAAP----------PPPPPAPYDNTNRIAHDE- 60

Query: 61  FCLVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKD 120
              VRTIFI+GLP+DVKERELQNLLRWLPGYEASQ+N KGE PMGFALFS+ + A AAKD
Sbjct: 61  ---VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 120

Query: 121 ALQNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPF 180
           ALQ M+FD ++KSVLHTEMAKKNLFVKRGIVAD NAYDQSKRLRTGGDYTHTGY++PSPF
Sbjct: 121 ALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPF 180

Query: 181 H-PPAPVWGPHGYMAPPPPPPYDPYGGYPVPPV--PMPAPVPAPSSYVPVQNTKDNPPCN 240
           H PPAPVWGPHGYMA PPPPPYDPYGGY VPPV  P PAPVPAPSSYVPVQNTKDNPPCN
Sbjct: 181 HAPPAPVWGPHGYMA-PPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCN 240

Query: 241 TLFIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGA 300
           TLFIGNLGE+INEEELRGLFS Q GFKQMKVLRQERHTVCFIEFED+NSAS VHHNLQGA
Sbjct: 241 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 300

Query: 301 VIPSSGSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           VIPSSGS+GMRIQYSKNP+GKRKD +H+ A+  A        +G  P + YQ
Sbjct: 301 VIPSSGSVGMRIQYSKNPFGKRKDGSHAIASPAA--------NGVPPALNYQ 328

[Close]

BLAST of Spo04527.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFJ2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_072300 PE=4 SV=1)

HSP 1 Score: 678.7 bits (1750), Expect = 3.700e-192
Identity = 342/347 (98.56%), Postives = 342/347 (98.56%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDVIFC 60
           MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDV   
Sbjct: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDV--- 60

Query: 61  LVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDAL 120
             RTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDAL
Sbjct: 61  --RTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDAL 120

Query: 121 QNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHP 180
           QNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHP
Sbjct: 121 QNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHP 180

Query: 181 PAPVWGPHGYMAPPPPPPYDPYGGYPVPPVPMPAPVPAPSSYVPVQNTKDNPPCNTLFIG 240
           PAPVWGPHGYMAPPPPPPYDPYGGYPVPPVPMPAPVPAPSSYVPVQNTKDNPPCNTLFIG
Sbjct: 181 PAPVWGPHGYMAPPPPPPYDPYGGYPVPPVPMPAPVPAPSSYVPVQNTKDNPPCNTLFIG 240

Query: 241 NLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVIPSS 300
           NLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVIPSS
Sbjct: 241 NLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVIPSS 300

Query: 301 GSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           GSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ
Sbjct: 301 GSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 342

[Close]

BLAST of Spo04527.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUT4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g188970 PE=4 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 8.100e-155
Identity = 296/352 (84.09%), Postives = 307/352 (87.22%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDVIFC 60
           MA   IHPYH QQW  VP PPPPP+  A PP PPPNS +PMPPPPHP LD +        
Sbjct: 1   MANTNIHPYHQQQW--VPPPPPPPT--ATPPAPPPNSAIPMPPPPHPSLDEQ-------- 60

Query: 61  LVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDAL 120
            VRTIF+SGLPEDVKERELQNLLRWLPGYEASQIN KGEHPMGFALF++PEFAHAAKDAL
Sbjct: 61  -VRTIFLSGLPEDVKERELQNLLRWLPGYEASQINYKGEHPMGFALFTTPEFAHAAKDAL 120

Query: 121 QNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHP 180
           QNMVFD DSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTG DYTHTGYASPSPFHP
Sbjct: 121 QNMVFDADSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTG-DYTHTGYASPSPFHP 180

Query: 181 P-APVWGPHGYMAPPPPPPYDPYGGYPVPPVPMP----APVPAPSSYVPVQNTKDNPPCN 240
           P APVWGPHGYMAP PPP YD YGGYPVPPVPMP    APVPAPSSYVPVQNTKDNPPCN
Sbjct: 181 PPAPVWGPHGYMAPLPPPSYDAYGGYPVPPVPMPAPAPAPVPAPSSYVPVQNTKDNPPCN 240

Query: 241 TLFIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGA 300
           TLFIGNLGE INE+ELRGLF+IQ GFKQMKVLRQERHTVCFIEFEDLNSAS VHHNLQGA
Sbjct: 241 TLFIGNLGETINEDELRGLFTIQPGFKQMKVLRQERHTVCFIEFEDLNSASLVHHNLQGA 300

Query: 301 VIPSSGSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           VIPSSGS+GMRIQYSKNP+GKRKDSNHS AA  A AAP   M+GAAPPM YQ
Sbjct: 301 VIPSSGSVGMRIQYSKNPFGKRKDSNHSPAA--AVAAPTIAMNGAAPPMNYQ 336

[Close]

BLAST of Spo04527.1 vs. UniProtKB/TrEMBL
Match: A0A061GFC4_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_027095 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 4.800e-139
Identity = 271/350 (77.43%), Postives = 294/350 (84.00%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDVIFC 60
           MAGAGIHPYH QQWPP PAPPPPP+ AA  P PPP+  V  PPPP    D          
Sbjct: 1   MAGAGIHPYH-QQWPPAPAPPPPPAAAAAAPPPPPS--VHHPPPPASSHDE--------- 60

Query: 61  LVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDAL 120
            VRTIFI+GLPEDVKERELQNLLRWLPGYEASQ+N KGE PMGFALFSS + A AAKD+L
Sbjct: 61  -VRTIFITGLPEDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSSAQLAVAAKDSL 120

Query: 121 QNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHP 180
           Q+M+FD +SKSVLH EMAKKNLFVKRGIVAD+NAYDQSKRLRTGGDY+H+ Y +PSPFHP
Sbjct: 121 QDMLFDAESKSVLHIEMAKKNLFVKRGIVADSNAYDQSKRLRTGGDYSHSAYTAPSPFHP 180

Query: 181 P-APVWGPHGYMAPPPPPPYDPYGGYPVPPVPMP--APVPAPSSYVPVQNTKDNPPCNTL 240
           P APVWGP GYMAP PPP YDPYGGYPVPPVPMP  APVPAPSSYVPVQNTKDNPPCNTL
Sbjct: 181 PPAPVWGPQGYMAPTPPP-YDPYGGYPVPPVPMPTPAPVPAPSSYVPVQNTKDNPPCNTL 240

Query: 241 FIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVI 300
           FIGNLGENINEEELRGLFS+Q GFKQMK+LRQERHTVCFIEFED+N+A++VHHNLQGAVI
Sbjct: 241 FIGNLGENINEEELRGLFSVQPGFKQMKILRQERHTVCFIEFEDVNTATNVHHNLQGAVI 300

Query: 301 PSSGSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           PSSGS+GMRIQYSKNP+GKRKDS H  A+  A        +GA P MTYQ
Sbjct: 301 PSSGSVGMRIQYSKNPFGKRKDSGHPIASPGA--------NGAPPSMTYQ 328

[Close]

BLAST of Spo04527.1 vs. UniProtKB/TrEMBL
Match: A0A067DU05_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020297mg PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 2.400e-138
Identity = 270/352 (76.70%), Postives = 291/352 (82.67%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDN--RLCDDVI 60
           MAGAGIH YH QQWPP PAPPPPP+ AA  P          PPPP  P DN  R+  D  
Sbjct: 1   MAGAGIHTYH-QQWPPAPAPPPPPAAAAAAP----------PPPPPVPYDNTNRIAHDE- 60

Query: 61  FCLVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKD 120
              VRTIFI+GLP+DVKERELQNLLRWLPGYEASQ+N KGE PMGFALFS+ + A AAKD
Sbjct: 61  ---VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 120

Query: 121 ALQNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPF 180
           ALQ M+FD ++KSVLHTEMAKKNLFVKRGIVAD NAYDQSKRLRTGGDYTHTGY++PSPF
Sbjct: 121 ALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPF 180

Query: 181 H-PPAPVWGPHGYMAPPPPPPYDPYGGYPVPPV--PMPAPVPAPSSYVPVQNTKDNPPCN 240
           H PPAPVWGPHGYMA PPPPPYDPYGGY VPPV  P PAPVPAPSSYVPVQNTKDNPPCN
Sbjct: 181 HAPPAPVWGPHGYMA-PPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCN 240

Query: 241 TLFIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGA 300
           TLFIGNLGE+INEEELRGLFS Q GFKQMKVLRQERHTVCFIEFED+NSAS VHHNLQGA
Sbjct: 241 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 300

Query: 301 VIPSSGSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           VIPSSGS+GMRIQYSKNP+GKRKD +H+ A+  A        +G  P + YQ
Sbjct: 301 VIPSSGSVGMRIQYSKNPFGKRKDGSHAIASPAA--------NGVPPALNYQ 328

[Close]

BLAST of Spo04527.1 vs. UniProtKB/TrEMBL
Match: V4S0T9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026062mg PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 2.400e-138
Identity = 270/352 (76.70%), Postives = 291/352 (82.67%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDN--RLCDDVI 60
           MAGAGIH YH QQWPP PAPPPPP+ AA  P          PPPP  P DN  R+  D  
Sbjct: 1   MAGAGIHTYH-QQWPPAPAPPPPPAAAAAAP----------PPPPPVPYDNTNRIAHDE- 60

Query: 61  FCLVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKD 120
              VRTIFI+GLP+DVKERELQNLLRWLPGYEASQ+N KGE PMGFALFS+ + A AAKD
Sbjct: 61  ---VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 120

Query: 121 ALQNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPF 180
           ALQ M+FD ++KSVLHTEMAKKNLFVKRGIVAD NAYDQSKRLRTGGDYTHTGY++PSPF
Sbjct: 121 ALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPF 180

Query: 181 H-PPAPVWGPHGYMAPPPPPPYDPYGGYPVPPV--PMPAPVPAPSSYVPVQNTKDNPPCN 240
           H PPAPVWGPHGYMA PPPPPYDPYGGY VPPV  P PAPVPAPSSYVPVQNTKDNPPCN
Sbjct: 181 HAPPAPVWGPHGYMA-PPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCN 240

Query: 241 TLFIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGA 300
           TLFIGNLGE+INEEELRGLFS Q GFKQMKVLRQERHTVCFIEFED+NSAS VHHNLQGA
Sbjct: 241 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 300

Query: 301 VIPSSGSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           VIPSSGS+GMRIQYSKNP+GKRKD +H+ A+  A        +G  P + YQ
Sbjct: 301 VIPSSGSVGMRIQYSKNPFGKRKDGSHAIASPAA--------NGVPPALNYQ 328

[Close]

BLAST of Spo04527.1 vs. ExPASy Swiss-Prot
Match: RBPS2_MOUSE (RNA-binding protein with multiple splicing 2 OS=Mus musculus GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.700e-12
Identity = 41/93 (44.09%), Postives = 52/93 (55.91%), Query Frame = 1


		  
Query: 62  VRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDALQ 121
           VRT+F+SGLP D+K REL  L R   GYE S I      P+GF +F S   A AAK+AL 
Sbjct: 24  VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKNALN 83

Query: 122 NMVFDVDSKSVLHTEMAKKNL-FVKRGIVADAN 154
            + FD ++   L  E AK N    K  ++A  N
Sbjct: 84  GIRFDPENPQTLRLEFAKANTKMAKSKLIATPN 116

[Close]

BLAST of Spo04527.1 vs. ExPASy Swiss-Prot
Match: SCW1_SCHPO (Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.900e-12
Identity = 65/208 (31.25%), Postives = 97/208 (46.63%), Query Frame = 1


		  
Query: 133 LHTEMAKKNLFVKRGIVADA-NAYDQSKRLRTGGDYTHTGYASPSPFHPPAPVWGPHGYM 192
           ++T +A+  L  ++G  A   N+  QS   R     +     SP P  P      P    
Sbjct: 328 INTNVARNYLSSEKGYSAHTQNSSAQSPHPRVFSANSAFSTTSPPPLTPSTSRDYPFSAS 387

Query: 193 APPPPPPYDPYGGYPVPPVPMPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENINEEEL 252
              P  P+  Y         +PA  P  ++         NPPCNT+++GNL  + +EEEL
Sbjct: 388 TISPSTPFSAYSSSHGIHQRIPASTPTNTN-----PADQNPPCNTIYVGNLPPSTSEEEL 447

Query: 253 RGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVIPSSGSIGMRIQYSK 312
           + LFS Q G+K++    +    +CF+EFE++  A     NLQG  + SS   G+R+ +SK
Sbjct: 448 KVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGVCLSSSIKGGIRLSFSK 507

Query: 313 NPYGKRKDS----NHSAAAINAAAAPMN 336
           NP G R  S    NH+    N  +  MN
Sbjct: 508 NPLGVRSSSSSHNNHNGNVRNLHSGSMN 530

[Close]

BLAST of Spo04527.1 vs. ExPASy Swiss-Prot
Match: WHI4_YEAST (Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WHI4 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.800e-12
Identity = 41/115 (35.65%), Postives = 62/115 (53.91%), Query Frame = 1


		  
Query: 224 PVQNTKDNPPCNTLFIGNLGENINEEELRGLFSIQSGFKQMKV---LRQERH-------T 283
           P      NPPCNTL++GNL  +  E+ELR LFS Q GF+++     +    H        
Sbjct: 522 PANPADQNPPCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGP 581

Query: 284 VCFIEFEDLNSASHVHHNLQGAVIPS-----SGSIGMRIQYSKNPYGKRKDSNHS 324
           +CF+EFED++ A+     L G+ +P      +   G+R+ +SKNP G R  ++ S
Sbjct: 582 ICFVEFEDVSFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNPLGVRGSNSRS 636

[Close]

BLAST of Spo04527.1 vs. ExPASy Swiss-Prot
Match: MDE7_SCHPO (RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mde7 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.900e-12
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 1


		  
Query: 228 TKDNPPCNTLFIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASH 287
           T  N PCNT+++GNL     E++LR  FS + G++++    +    +CF+EFE++  A+ 
Sbjct: 595 TDHNSPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAK 654

Query: 288 VHHNLQGAVIPSSGSIGMRIQYSKNPYGKRKDSNHSAAA 327
               +QGA +      G+R+ YSKNP G R   N S  A
Sbjct: 655 AMEKMQGAALDDKIKGGIRLSYSKNPLGVRSTENLSTTA 693

[Close]

BLAST of Spo04527.1 vs. ExPASy Swiss-Prot
Match: RBPMS_CHICK (RNA-binding protein with multiple splicing OS=Gallus gallus GN=RBPMS PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.400e-12
Identity = 38/80 (47.50%), Postives = 47/80 (58.75%), Query Frame = 1


		  
Query: 62  VRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDALQ 121
           VRT+F+SGLP D+K REL  L R   GYE S I    + P+GF  F S   A AAK+AL 
Sbjct: 21  VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAGAEAAKNALN 80

Query: 122 NMVFDVDSKSVLHTEMAKKN 142
            + FD ++   L  E AK N
Sbjct: 81  GIRFDPENPQTLRLEFAKAN 100

[Close]

BLAST of Spo04527.1 vs. TAIR (Arabidopsis)
Match: AT3G21215.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 452.2 bits (1162), Expect = 2.900e-127
Identity = 257/352 (73.01%), Postives = 280/352 (79.55%), Query Frame = 1


		  
Query: 1   MAGAGIHPYHHQQWPPVPAPPPPPS-TAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDVIF 60
           MAGAGIHPYH QQWPP  APPPP + ++A PP PPP    P PPP      NR   D + 
Sbjct: 1   MAGAGIHPYH-QQWPPAGAPPPPAAVSSAAPPHPPPIHHHPPPPPVLVDNHNRPPYDEL- 60

Query: 61  CLVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHPMGFALFSSPEFAHAAKDA 120
              RTIFI+GLP+DVKEREL NLLRWLPGYEASQ+N KGE PMGFALFS+ +FA AAKD 
Sbjct: 61  ---RTIFIAGLPDDVKERELLNLLRWLPGYEASQVNFKGEKPMGFALFSTAQFAMAAKDT 120

Query: 121 LQNMVFDVDSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFH 180
           LQ+MVFD +SKSV+HTEMAKKNLFVKRGIV D+NAYDQSKRLRTGGD TH+ Y SPSPFH
Sbjct: 121 LQHMVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRLRTGGDCTHSVY-SPSPFH 180

Query: 181 -PPAPVWG-PHGYMAPPPPPPYDPYGGYPVPPVPMPAPVP--APSSYVPVQNTKDNPPCN 240
            PP PVWG PHGYMA P PPPYDPY GY  PPVPMP P P  APSSYVPVQN KDNPPCN
Sbjct: 181 PPPPPVWGPPHGYMA-PAPPPYDPYAGYHAPPVPMPTPPPIAAPSSYVPVQNIKDNPPCN 240

Query: 241 TLFIGNLGENINEEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGA 300
           TLFIGNLGENINEEELR L S Q GFKQMK+LRQERHTVCFIEFED+NSA++VHHNLQGA
Sbjct: 241 TLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQGA 300

Query: 301 VIPSSGSIGMRIQYSKNPYGKRKDSNHSAAAINAAAAPMNTMSGAAPPMTYQ 348
           VIPSSGSIGMRIQYSKNPYGKRK+          +  P  + +GA   +TYQ
Sbjct: 301 VIPSSGSIGMRIQYSKNPYGKRKEGG------GYSFFPSPSANGAQGALTYQ 339

[Close]

BLAST of Spo04527.1 vs. TAIR (Arabidopsis)
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 115.5 bits (288), Expect = 6.400e-26
Identity = 107/304 (35.20%), Postives = 149/304 (49.01%), Query Frame = 1


		  
Query: 9   YHHQQWPPVPAPPPPPSTAAPPPLPPPNSVVPMPPPPHPPLDNRLCDDVIFCLVRTIFIS 68
           Y H   P +  PPPPP  + P P+   +SV     P H  +  R  D+V     RT+F++
Sbjct: 8   YSHYNLPAM-VPPPPPGVS-PIPITSAHSVYL---PTHVSIGAR--DEV-----RTLFVA 67

Query: 69  GLPEDVKERELQNLLRWLPGYEASQINQK-GEHPMGFALFSSPEFAHAAKDALQNMVFDV 128
           GLPEDVK RE+ NL R  PGYE S +    G  P  FA+FS  + A A   AL  MVFD+
Sbjct: 68  GLPEDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDL 127

Query: 129 DSKSVLHTEMAKKNLFVKRGIVADANAYDQSKRLRTGGDYTHTGYASPSPFHPPAPVWGP 188
           +  S LH ++AK N   KR    D   ++  K+L++    T +G+ S   F  P      
Sbjct: 128 EKHSTLHIDLAKSNPKSKRSRTDDG--WESLKKLKSWNTTTESGFGS---FQTPGMSSSA 187

Query: 189 HGYMAPPPPPPYDPYGGYPVPPVPMPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGENIN 248
           +  +       Y P     +  V   AP     S       K   PC TLFI N+G N  
Sbjct: 188 YNTIG------YSPAQSQGIANVAGRAPTSRKPS-------KAADPCPTLFIANMGPNCT 247

Query: 249 EEELRGLFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVIPSS--GSIGM 308
           E EL  +FS   GF ++K+       V F++F+D++ +S   H LQG V+ SS  G + +
Sbjct: 248 EAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEV-L 280

Query: 309 RIQY 310
           R+QY
Sbjct: 308 RLQY 280

[Close]

BLAST of Spo04527.1 vs. TAIR (Arabidopsis)
Match: AT3G13700.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 81.3 bits (199), Expect = 1.300e-15
Identity = 85/295 (28.81%), Postives = 125/295 (42.37%), Query Frame = 1


		  
Query: 44  PPHPPLDNRLCDDVIFCLVRTIFISGLPEDVKERELQNLLRWLPGYEASQINQKGEHP-- 103
           PP  PL   L D+     + T+F+SGLP DVK RE+ NL R   G+E+ Q+   G     
Sbjct: 23  PPQLPL---LADEP--GAINTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTGRGDQV 82

Query: 104 ------------------MGFALFSSPEFAHAAKDALQNMVFDVDSKSVLHTEMAKKNLF 163
                             + FA F+S  FA AA + L  + FD  + S LH E+A+ N  
Sbjct: 83  CKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSR 142

Query: 164 VKRG------IVADANAYDQSKRLRTGGDYTHTGYASPSPFHPPAPVWGPHGYMAPPPPP 223
            K        +V D    + SK   +  D +  G + P     P     P          
Sbjct: 143 RKERPGSGPYVVIDNRNKEISK---SQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEA 202

Query: 224 PYDPYGGYPVPPVPMPAPVPAPSSYVPVQNTKDNPP----CNTLFIGNLGENINEEELRG 283
             +P                APS+   ++   +       C+TLFI NLG N  E+EL+ 
Sbjct: 203 DSEPDS-------------KAPSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQ 262

Query: 284 LFSIQSGFKQMKVLRQERHTVCFIEFEDLNSASHVHHNLQGAVIPSSGSIGMRIQ 309
           L S   GF  +K+  +    V F +FE++  A+   ++LQG ++ SS   GM I+
Sbjct: 263 LLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIE 296

The following BLAST results are available for this feature:

BLAST of Spo04527.1 vs. NCBI nr
BLAST of Spo04527.1 vs. UniProtKB/TrEMBL
BLAST of Spo04527.1 vs. ExPASy Swiss-Prot
BLAST of Spo04527.1 vs. TAIR (Arabidopsis)

BLAST of Spo04527.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902219223\|gb\|KNA18250.1\|	5.3e-192	98.5	hypothetical protein SOVF_0723...	[more]
gi\|731351920\|ref\|XP_010687275.1\|	1.2e-154	84.0	PREDICTED: RNA-binding protein...	[more]
gi\|590614966\|ref\|XP_007023092.1\|	6.8e-139	77.4	RNA-binding family protein [Th...	[more]
gi\|1009152470\|ref\|XP_015894111.1\|	6.8e-139	76.9	PREDICTED: U1 small nuclear ri...	[more]
gi\|568878037\|ref\|XP_006492013.1\|	2.6e-138	76.7	PREDICTED: RNA-binding protein...	[more]

BLAST of Spo04527.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RFJ2_SPIOL	3.7e-192	98.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8BUT4_BETVU	8.1e-155	84.0	Uncharacterized protein OS=Bet...	[more]
A0A061GFC4_THECC	4.8e-139	77.4	RNA-binding family protein OS=...	[more]
A0A067DU05_CITSI	2.4e-138	76.7	Uncharacterized protein OS=Cit...	[more]
V4S0T9_9ROSI	2.4e-138	76.7	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo04527.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RBPS2_MOUSE	1.7e-12	44.0	RNA-binding protein with multi...	[more]
SCW1_SCHPO	2.9e-12	31.2	Cell wall integrity protein sc...	[more]
WHI4_YEAST	3.8e-12	35.6	Protein WHI4 OS=Saccharomyces ...	[more]
MDE7_SCHPO	4.9e-12	36.3	RNA-binding protein mde7 OS=Sc...	[more]
RBPMS_CHICK	6.4e-12	47.5	RNA-binding protein with multi...	[more]

BLAST of Spo04527.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT3G21215.1	2.9e-127	73.0	RNA-binding (RRM/RBD/RNP motif...	[more]
AT2G42240.2	6.4e-26	35.2	RNA-binding (RRM/RBD/RNP motif...	[more]
AT3G13700.1	1.3e-15	28.8	RNA-binding (RRM/RBD/RNP motif...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 65..125 score: 1.4E-6coord: 237..298 score: 2.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 64..134 score: 0.035coord: 236..308 score: 8.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 235..312 score: 12.134coord: 63..140 score: 8
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 226..312 score: 1.0E-19coord: 63..136 score: 3.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 63..150 score: 2.07E-17coord: 232..297 score: 2.07
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 342..347 score: 4.5E-116coord: 226..318 score: 4.5E-116coord: 62..157 score: 4.5E
None	No IPR available	PANTHER	PTHR24012:SF393	SUBFAMILY NOT NAMED	coord: 342..347 score: 4.5E-116coord: 226..318 score: 4.5E-116coord: 62..157 score: 4.5E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding