Spo20605.1 (mRNA)

Overview
NameSpo20605.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 44537752 .. 44540272 (+)
Sequence length476
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAGAAGAATTTGAGGTAGTACCGTAGTAGTCATACTTGTCAGTCACCGGCTCAACTCACTAGTGAGTAGTGACGAGCTCACTGCCACCTGCGTACCCGAATCCCGATAAACATCTATCCAGAAAATGGGAAGTTGAACACAACGAAACCAGCCACCCAAATATTTTGTCACCAATTCACCATTTACAACAACATAGTTGGAGAGTGAAAGAGCAGATCTAGAGAATGGAGACTCTTTCAAGAGGAAGCTGCCCACTTTTTATGAACAGCTTCCTATTTGCCAGAAATCCAAATTCAAATCAAAGTAGTTGCACTATATTGTTTCCCAAATCCTCTTCACTCAGAAGTCCCACTGTTTCAGTCCTCAAATCCCCTTCTTCAGGTTATTTCTATCAATGCCTTACTTCTAACATTTTGATAAATTTGTTTAAGAATTACGGCTTCTTATAATTATCTATTTTTTGTGATCTTTGTGAAATTTTATGGAAATGGTGGTCTGGGTTATGTGGATTATAGTGTGTTCTTATCAATTTTGAATTGGGGTATGTTAATGAGCCATTTATTTCTCTTATAATGGACTAGAATTATACTATTTGTTTTCTATTTTATCTGCACTCTGCAATTATGGGTTGGATATTGCCCTTCAGTTTTGGGGGAAGATTTACTTTTATACATAGAAATTGCAGGTTTGTTTGATTCTGAATTATGATTTTTTTTTTTTCATTTGTGCAACTAGATTTCACAATCGCCTTCTGTTGTTGTTTAGCCATAAGCTTGAAATCAGCAAATTAGCCATTAACTTGCTATTGATAAACTAGTCATACGACGTCTACAATAAAAATCAAAACTAACAAATACAAAATCATTTGGATCAAACAAAATTCTAATCCGGCAAAACCACTATCGTTGTAGAGATCTGACAATGATGAATACCCTCTTTCACATGGCTGTTTGATACATCCATCAACGAGGGGGTATTTCAATCTGTTGTAGCTTTGGTATTGAATTAAATTCGATTCAATTGATTGTAGACGTAAGAATGACATCCATTGTAACCCCGCACAAATCTTCATCAATAAATCAAAAGCTCTCCAATAAGGAGGGAATGGAGTTTTTATTCCGAACATGAAATCAAAAGCTAGGAAAAGCAAGAAAAAAGGGGCTTACCATCAACCTAATGGTTGGTGGTAGCCCCTAAAAAATTAGGGTTTTGAAAGAAAAAGAGAGAAAAGGGAGAGATGGTTGAACATTATTTTAAATTTGTTGTTGACTTTTGGCTGTCAAATTGCAAATGTCTTTCATGTATTAAAATATGAAAGATTTTATTTCCTTATTTGCAATATGGCATTAAATAATTAGTTTTTGGGAAATTCTACATGGTGACTTTGTACTATAGTATTTTCTACTTGGCGGAAATAAAATAATTTGACTTTCTAGAGTGGGCTTGTAGTTTTAAAAATATCATTAGAGTGCACTAATTACGTGTTTAAGAGCTAACCCATGGATATATGACTAATTTTATAACCAGTTAAACAAAAATTACTAACCTACCCATGAGTTAATCAATTCCCTCAAAAACCTAAATAAGCTCGCCTGCTTTTCACTTGCATTTGCTCCTCAAATACTTCGTATAAATGTATACCCAGAAAGATAAAACATATCACTATTATTAACAACCCTACACCTCATTACCATTATCAGAACTAGCATCACCAAAAATGGACTACGAAAATAGTGGAAGAATGAAAAGGAAATAAAAGTAGTCTGGTTGGGTTCTGAATTCTGTTTTCTGAAGAACTAATGGTTCTGAATCCACACTTGGGCTGCTCGTGGGAGAAATGGAATAAATAATAAGACCAACAGAATCAGAGTTCTACTAATATGGGTCTATTAATTGAGAATAGTTTCCAGTTTATGCCAATGGAGCACTAGTCATTAAGTTTCTTAAAAAAAAGCATGTCATACAATGACGATACCACCTTAATCTCCACGGTTATGCATGGTGCTCCTTTAGAAGCGCCTATAACAAGACCAAACAGAATGATTAAGAAGGAAATTTAAACAAGCAATGATCAGTTCCTTTTTCTTAAATAAAACATTGTACGACACATTGTTTTCTACTTTGCTCTATACAAGTAAGCACAAAGCAAACAAGTAGCAACTTAATAAATACTACAGTGAAAAATCATGCAGTTTAACAATATAACAAAATATTGGAATACATTCGTATTAGAGGTCGTTGGACAACTTTTGGGCTCGCTTACATTAAGGAAACTCAGGTCTGTGTAAATAACAGAAGGAAATTGATATACTTGGACAACTTTTCCTAGCGTTACTAACCTTGGGGGAATACTGAATGATCTGACATTAGCATCACTGCATCACAGAATACTGAATTGTTTTTATGTTTTCTGTCCCCTTATTTAGCTTCTGATCATTGCAGATCTGCCAAGCATGCTTTTTGTATGGCTGTTGGTATCATATTGTACAACATTCCTTGTTACTGTGGAATTTTATGA

mRNA sequence

TTTTAGAAGAATTTGAGGTAGTACCGTAGTAGTCATACTTGTCAGTCACCGGCTCAACTCACTAGTGAGTAGTGACGAGCTCACTGCCACCTGCGTACCCGAATCCCGATAAACATCTATCCAGAAAATGGGAAGTTGAACACAACGAAACCAGCCACCCAAATATTTTGTCACCAATTCACCATTTACAACAACATAGTTGGAGAGTGAAAGAGCAGATCTAGAGAATGGAGACTCTTTCAAGAGGAAGCTGCCCACTTTTTATGAACAGCTTCCTATTTGCCAGAAATCCAAATTCAAATCAAAGTAGTTGCACTATATTGTTTCCCAAATCCTCTTCACTCAGAAGTCCCACTGTTTCAGTCCTCAAATCCCCTTCTTCAGCTTCTGATCATTGCAGATCTGCCAAGCATGCTTTTTGTATGGCTGTTGGTATCATATTGTACAACATTCCTTGTTACTGTGGAATTTTATGA

Coding sequence (CDS)

ATGGAGACTCTTTCAAGAGGAAGCTGCCCACTTTTTATGAACAGCTTCCTATTTGCCAGAAATCCAAATTCAAATCAAAGTAGTTGCACTATATTGTTTCCCAAATCCTCTTCACTCAGAAGTCCCACTGTTTCAGTCCTCAAATCCCCTTCTTCAGCTTCTGATCATTGCAGATCTGCCAAGCATGCTTTTTGTATGGCTGTTGGTATCATATTGTACAACATTCCTTGTTACTGTGGAATTTTATGA

Protein sequence

METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSASDHCRSAKHAFCMAVGIILYNIPCYCGIL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo20605Spo20605gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo20605.1Spo20605.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo20605.1.exon.1Spo20605.1.exon.1exon
Spo20605.1.exon.2Spo20605.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo20605.1.utr5p.1Spo20605.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo20605.1.CDS.1Spo20605.1.CDS.1CDS
Spo20605.1.CDS.2Spo20605.1.CDS.2CDS


Homology
[Close]
BLAST of Spo20605.1 vs. NCBI nr
Match: gi|902203624|gb|KNA14630.1| (hypothetical protein SOVF_105580 [Spinacia oleracea])

HSP 1 Score: 105.1 bits (261), Expect = 5.800e-20
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

		  

Query: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSASD 56
          METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSA++
Sbjct: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSATE 55
[Close]
BLAST of Spo20605.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R555_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105580 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.000e-20
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

		  

Query: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSASD 56
          METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSA++
Sbjct: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSATE 55
The following BLAST results are available for this feature:
BLAST of Spo20605.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902203624|gb|KNA14630.1|5.8e-2096.3hypothetical protein SOVF_1055... [more]
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BLAST of Spo20605.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R555_SPIOL4.0e-2096.3Uncharacterized protein OS=Spi... [more]
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BLAST of Spo20605.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20605.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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