Spo24238.1 (mRNA) | SpinachBase

Overview


Name	Spo24238.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Transmembrane protein, putative
Location	chr2 : 47425724 .. 47426707 (-)
Sequence length	984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCATTGATTAGAACTCCAGTACCCAATGTTACTGTTGCTGGATTCCGTTATCAGAGCCAGAAACATAGGAGGTTGACCAATAATCATGTTGGATTTTCTCTTCCAAAGCTCCATTTAAATCGCCTTTCAGTTTGCTGCTCAAAGTTGACACCGTGGGAACCCACTCCACTTACGTATGCACCCACTGATGAAGCTGAACCCGAGATTTTAGAAGAAACTCCCAACTTATTTGACACCCTAAAGTTCGAGGGCACTGCAGCTACACCAGCTGCTGAATCTGAAAAATTAGCTCAAAAAACCAGCAACAAATCACAGGGGGCAGGCTTTCTGAAATGGCCATTATGGATTCTGGGTCCGGGATTCCTTCTCGTAACTGGCATGGTACCGACTTTGTGGCTACCAATATCGTCCATATTCCTCGGGCCAAACATTGCTAGCTTACTTTCCCTTGTTGGGCTAGATTGCATCTTCAATATCGGTGCAATGCTGTTCCTCCTGATGGCCCATTCTACAACTCAACCAAAAGATCCAATGGAAGCACCCCAAAGCAAGGCTCCTCTCAGTTACCGGTTCTGGAACATGTTTGCTTCAATAATAGGCTACGCTATCCCGTTGGCATTGCTGTATGGCTCACATAAGGGCCTCCTCCAACCACAGCTTGCACCCATCTCATACATGGTACTTTTAGGCCCTTACCTTCTTCTTCTGTCAGTGCAGATGTTGACAGAATTGCTGACTTGGCATTGGCAATCACCCGTGTGGCTTGTAACTCCTGTTGTATATGAGGCATATCGAGTGCTGCAGCTCATGAGGGGTTTGAAGCTTAGTGCAGAGATAAGTGCACCTGCATGGATGATGCATACTATAAGGGGGTTGGTGTGTTGGTGGGTGCTCATTCTTGGTTTGCAGCTCATGAGGGTTGCTTGGTATGCCGGGTTCTCTGCTAAAACGCGTAAAGAGCAGAGATCATACCCGTGA

mRNA sequence

ATGTCATCATTGATTAGAACTCCAGTACCCAATGTTACTGTTGCTGGATTCCGTTATCAGAGCCAGAAACATAGGAGGTTGACCAATAATCATGTTGGATTTTCTCTTCCAAAGCTCCATTTAAATCGCCTTTCAGTTTGCTGCTCAAAGTTGACACCGTGGGAACCCACTCCACTTACGTATGCACCCACTGATGAAGCTGAACCCGAGATTTTAGAAGAAACTCCCAACTTATTTGACACCCTAAAGTTCGAGGGCACTGCAGCTACACCAGCTGCTGAATCTGAAAAATTAGCTCAAAAAACCAGCAACAAATCACAGGGGGCAGGCTTTCTGAAATGGCCATTATGGATTCTGGGTCCGGGATTCCTTCTCGTAACTGGCATGGTACCGACTTTGTGGCTACCAATATCGTCCATATTCCTCGGGCCAAACATTGCTAGCTTACTTTCCCTTGTTGGGCTAGATTGCATCTTCAATATCGGTGCAATGCTGTTCCTCCTGATGGCCCATTCTACAACTCAACCAAAAGATCCAATGGAAGCACCCCAAAGCAAGGCTCCTCTCAGTTACCGGTTCTGGAACATGTTTGCTTCAATAATAGGCTACGCTATCCCGTTGGCATTGCTGTATGGCTCACATAAGGGCCTCCTCCAACCACAGCTTGCACCCATCTCATACATGGTACTTTTAGGCCCTTACCTTCTTCTTCTGTCAGTGCAGATGTTGACAGAATTGCTGACTTGGCATTGGCAATCACCCGTGTGGCTTGTAACTCCTGTTGTATATGAGGCATATCGAGTGCTGCAGCTCATGAGGGGTTTGAAGCTTAGTGCAGAGATAAGTGCACCTGCATGGATGATGCATACTATAAGGGGGTTGGTGTGTTGGTGGGTGCTCATTCTTGGTTTGCAGCTCATGAGGGTTGCTTGGTATGCCGGGTTCTCTGCTAAAACGCGTAAAGAGCAGAGATCATACCCGTGA

Coding sequence (CDS)

ATGTCATCATTGATTAGAACTCCAGTACCCAATGTTACTGTTGCTGGATTCCGTTATCAGAGCCAGAAACATAGGAGGTTGACCAATAATCATGTTGGATTTTCTCTTCCAAAGCTCCATTTAAATCGCCTTTCAGTTTGCTGCTCAAAGTTGACACCGTGGGAACCCACTCCACTTACGTATGCACCCACTGATGAAGCTGAACCCGAGATTTTAGAAGAAACTCCCAACTTATTTGACACCCTAAAGTTCGAGGGCACTGCAGCTACACCAGCTGCTGAATCTGAAAAATTAGCTCAAAAAACCAGCAACAAATCACAGGGGGCAGGCTTTCTGAAATGGCCATTATGGATTCTGGGTCCGGGATTCCTTCTCGTAACTGGCATGGTACCGACTTTGTGGCTACCAATATCGTCCATATTCCTCGGGCCAAACATTGCTAGCTTACTTTCCCTTGTTGGGCTAGATTGCATCTTCAATATCGGTGCAATGCTGTTCCTCCTGATGGCCCATTCTACAACTCAACCAAAAGATCCAATGGAAGCACCCCAAAGCAAGGCTCCTCTCAGTTACCGGTTCTGGAACATGTTTGCTTCAATAATAGGCTACGCTATCCCGTTGGCATTGCTGTATGGCTCACATAAGGGCCTCCTCCAACCACAGCTTGCACCCATCTCATACATGGTACTTTTAGGCCCTTACCTTCTTCTTCTGTCAGTGCAGATGTTGACAGAATTGCTGACTTGGCATTGGCAATCACCCGTGTGGCTTGTAACTCCTGTTGTATATGAGGCATATCGAGTGCTGCAGCTCATGAGGGGTTTGAAGCTTAGTGCAGAGATAAGTGCACCTGCATGGATGATGCATACTATAAGGGGGTTGGTGTGTTGGTGGGTGCTCATTCTTGGTTTGCAGCTCATGAGGGTTGCTTGGTATGCCGGGTTCTCTGCTAAAACGCGTAAAGAGCAGAGATCATACCCGTGA

Protein sequence

MSSLIRTPVPNVTVAGFRYQSQKHRRLTNNHVGFSLPKLHLNRLSVCCSKLTPWEPTPLTYAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWILGPGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKDPMEAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLLSVQMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLILGLQLMRVAWYAGFSAKTRKEQRSYP

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24238	Spo24238	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24238.1	Spo24238.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24238.1.CDS.1	Spo24238.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24238.1.exon.1	Spo24238.1.exon.1	exon

Homology

[Close]

BLAST of Spo24238.1 vs. NCBI nr
Match: gi|902230067|gb|KNA21697.1| (hypothetical protein SOVF_040260 [Spinacia oleracea])

HSP 1 Score: 656.8 bits (1693), Expect = 2.000e-185
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 1


		  
Query: 1   MSSLIRTPVPNVTVAGFRYQSQKHRRLTNNHVGFSLPKLHLNRLSVCCSKLTPWEPTPLT 60
           MSSLIRTPVPNVTVAGFRYQSQKHRRLTNNHVGFSLPKLHLNRLSVCCSKLTPWEPTPLT
Sbjct: 1   MSSLIRTPVPNVTVAGFRYQSQKHRRLTNNHVGFSLPKLHLNRLSVCCSKLTPWEPTPLT 60

Query: 61  YAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWILG 120
           YAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWILG
Sbjct: 61  YAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWILG 120

Query: 121 PGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKDPM 180
           PGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKDPM
Sbjct: 121 PGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKDPM 180

Query: 181 EAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLLSV 240
           EAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLLSV
Sbjct: 181 EAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLLSV 240

Query: 241 QMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVL 300
           QMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVL
Sbjct: 241 QMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVL 300

Query: 301 ILGLQLMRVAWYAGFSAKTRKEQRSYP 328
           ILGLQLMRVAWYAGFSAKTRKEQRSYP
Sbjct: 301 ILGLQLMRVAWYAGFSAKTRKEQRSYP 327

[Close]

BLAST of Spo24238.1 vs. NCBI nr
Match: gi|731361090|ref|XP_010692169.1| (PREDICTED: uncharacterized protein LOC104905351 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 551.6 bits (1420), Expect = 9.300e-154
Identity = 272/321 (84.74%), Postives = 294/321 (91.59%), Query Frame = 1


		  
Query: 2   SSLIRTPVPNVTVAGFRYQSQKHRRLTNNHVGFSLPKLHLNRLSVCCSKLTPWEPTPLTY 61
           SSLIRTP P++TV GF Y SQK+ RLTN+  G SLPKL +NRLSVCCSKLTPWEPTPLTY
Sbjct: 3   SSLIRTPFPSITVTGFCYPSQKYGRLTNHRHGLSLPKLKMNRLSVCCSKLTPWEPTPLTY 62

Query: 62  APTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWILGP 121
           APTDEAEPE +EET N+FDTLKFE  AAT AA+SEKL Q  S  S+ AGFLKWPLWILGP
Sbjct: 63  APTDEAEPEYVEETANIFDTLKFEDAAATAAADSEKLTQSQSKPSKEAGFLKWPLWILGP 122

Query: 122 GFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKDPME 181
            FLLVTGMVPTLWLPISSIFLG NIASLL+LVGLDCIFN+GA LFLLMAHSTTQPKDPME
Sbjct: 123 AFLLVTGMVPTLWLPISSIFLGSNIASLLALVGLDCIFNLGATLFLLMAHSTTQPKDPME 182

Query: 182 APQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLLSVQ 241
           +P+SKAP SYRFWNMFASI+GYAIPLALL+GS KG LQPQLAPISY+VLLGPYLLLLSVQ
Sbjct: 183 SPKSKAPFSYRFWNMFASIVGYAIPLALLFGSQKGFLQPQLAPISYLVLLGPYLLLLSVQ 242

Query: 242 MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 301
           MLTELLTWHW+SPVWLVTPV+YEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI
Sbjct: 243 MLTELLTWHWKSPVWLVTPVIYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 302

Query: 302 LGLQLMRVAWYAGFSAKTRKE 323
           LGLQLMRVAW+AGFSA+ +K+
Sbjct: 303 LGLQLMRVAWFAGFSARNQKK 323

[Close]

BLAST of Spo24238.1 vs. NCBI nr
Match: gi|743788488|ref|XP_011033648.1| (PREDICTED: uncharacterized protein LOC105132062 [Populus euphratica])

HSP 1 Score: 407.9 bits (1047), Expect = 1.700e-110
Identity = 198/324 (61.11%), Postives = 252/324 (77.78%), Query Frame = 1


		  
Query: 1   MSSLIRTPVPNVTVAGFRYQSQKHRRLTN--NHVGFSLPKLHLNRLSVCCSKLTPWEPTP 60
           M+SL++ P    T+   +   +K +  +N   H G   P++H+N  +VCC+KLTPWEP+P
Sbjct: 1   MASLVKAPPTMSTINAHQVHLRKLKLPSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSP 60

Query: 61  LTYAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWI 120
           +TYAPT +A   +L++T N+F+TLK E TA  PA  SE+LA  T+       FLKWP+W+
Sbjct: 61  VTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELADTTNQSLVHFQFLKWPMWL 120

Query: 121 LGPGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKD 180
           LGP  LL TGMVPTLWLP+SS+FLGPNIASLLSL+GLDCIFN+GA LFLLMA S ++ K+
Sbjct: 121 LGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKN 180

Query: 181 PMEAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLL 240
             +   SK PLSY+FWNM A++ G+ IPL  L GS KG+LQPQL  I + VLLGPY+LLL
Sbjct: 181 QAQTCNSKPPLSYKFWNMVATVSGFVIPLMALLGSRKGILQPQLPFIPFAVLLGPYMLLL 240

Query: 241 SVQMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWW 300
           SVQ+LTELLTWHWQSPVWLVTPVVYE+YR+LQLMRGLKL AE+SAP WM+H IRGLV WW
Sbjct: 241 SVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWW 300

Query: 301 VLILGLQLMRVAWYAGFSAKTRKE 323
           +LILG+QLM VAW+AGF+A+++++
Sbjct: 301 ILILGVQLMSVAWFAGFAARSQQQ 324

[Close]

BLAST of Spo24238.1 vs. NCBI nr
Match: gi|743788490|ref|XP_011033660.1| (PREDICTED: uncharacterized protein LOC105132070 isoform X1 [Populus euphratica])

HSP 1 Score: 406.8 bits (1044), Expect = 3.700e-110
Identity = 197/324 (60.80%), Postives = 252/324 (77.78%), Query Frame = 1


		  
Query: 1   MSSLIRTPVPNVTVAGFRYQSQKHRRLTN--NHVGFSLPKLHLNRLSVCCSKLTPWEPTP 60
           M+SL++ P    T+   +   +K +  +N   H G   P++H+N  +VCC+KLTPWEP+P
Sbjct: 21  MASLVKAPPTMSTINAHQVHLRKLKLPSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSP 80

Query: 61  LTYAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWI 120
           +TYAPT +A   +L++T N+F+TLK E TA  PA  SE+LA  T+       FLKWP+W+
Sbjct: 81  VTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELADTTNQSLVHFQFLKWPMWL 140

Query: 121 LGPGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKD 180
           LGP  LL TGMVPTLW+P+SS+FLGPNIASLLSL+GLDCIFN+GA LFLLMA S ++ K+
Sbjct: 141 LGPSLLLTTGMVPTLWVPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKN 200

Query: 181 PMEAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLL 240
             +   SK PLSY+FWNM A++ G+ IPL  L GS KG+LQPQL  I + VLLGPY+LLL
Sbjct: 201 QAQTCNSKPPLSYKFWNMVATVSGFVIPLMALLGSRKGILQPQLPFIPFAVLLGPYMLLL 260

Query: 241 SVQMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWW 300
           SVQ+LTELLTWHWQSPVWLVTPVVYE+YR+LQLMRGLKL AE+SAP WM+H IRGLV WW
Sbjct: 261 SVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWW 320

Query: 301 VLILGLQLMRVAWYAGFSAKTRKE 323
           +LILG+QLM VAW+AGF+A+++++
Sbjct: 321 ILILGVQLMSVAWFAGFAARSQQQ 344

[Close]

BLAST of Spo24238.1 vs. NCBI nr
Match: gi|743788494|ref|XP_011033667.1| (PREDICTED: uncharacterized protein LOC105132070 isoform X2 [Populus euphratica])

HSP 1 Score: 406.8 bits (1044), Expect = 3.700e-110
Identity = 197/324 (60.80%), Postives = 252/324 (77.78%), Query Frame = 1


		  
Query: 1   MSSLIRTPVPNVTVAGFRYQSQKHRRLTN--NHVGFSLPKLHLNRLSVCCSKLTPWEPTP 60
           M+SL++ P    T+   +   +K +  +N   H G   P++H+N  +VCC+KLTPWEP+P
Sbjct: 1   MASLVKAPPTMSTINAHQVHLRKLKLPSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSP 60

Query: 61  LTYAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWI 120
           +TYAPT +A   +L++T N+F+TLK E TA  PA  SE+LA  T+       FLKWP+W+
Sbjct: 61  VTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELADTTNQSLVHFQFLKWPMWL 120

Query: 121 LGPGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKD 180
           LGP  LL TGMVPTLW+P+SS+FLGPNIASLLSL+GLDCIFN+GA LFLLMA S ++ K+
Sbjct: 121 LGPSLLLTTGMVPTLWVPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKN 180

Query: 181 PMEAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLL 240
             +   SK PLSY+FWNM A++ G+ IPL  L GS KG+LQPQL  I + VLLGPY+LLL
Sbjct: 181 QAQTCNSKPPLSYKFWNMVATVSGFVIPLMALLGSRKGILQPQLPFIPFAVLLGPYMLLL 240

Query: 241 SVQMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWW 300
           SVQ+LTELLTWHWQSPVWLVTPVVYE+YR+LQLMRGLKL AE+SAP WM+H IRGLV WW
Sbjct: 241 SVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWW 300

Query: 301 VLILGLQLMRVAWYAGFSAKTRKE 323
           +LILG+QLM VAW+AGF+A+++++
Sbjct: 301 ILILGVQLMSVAWFAGFAARSQQQ 324

[Close]

BLAST of Spo24238.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSC1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040260 PE=4 SV=1)

HSP 1 Score: 656.8 bits (1693), Expect = 1.400e-185
Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 1


		  
Query: 1   MSSLIRTPVPNVTVAGFRYQSQKHRRLTNNHVGFSLPKLHLNRLSVCCSKLTPWEPTPLT 60
           MSSLIRTPVPNVTVAGFRYQSQKHRRLTNNHVGFSLPKLHLNRLSVCCSKLTPWEPTPLT
Sbjct: 1   MSSLIRTPVPNVTVAGFRYQSQKHRRLTNNHVGFSLPKLHLNRLSVCCSKLTPWEPTPLT 60

Query: 61  YAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWILG 120
           YAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWILG
Sbjct: 61  YAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWILG 120

Query: 121 PGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKDPM 180
           PGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKDPM
Sbjct: 121 PGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKDPM 180

Query: 181 EAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLLSV 240
           EAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLLSV
Sbjct: 181 EAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLLSV 240

Query: 241 QMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVL 300
           QMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVL
Sbjct: 241 QMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVL 300

Query: 301 ILGLQLMRVAWYAGFSAKTRKEQRSYP 328
           ILGLQLMRVAWYAGFSAKTRKEQRSYP
Sbjct: 301 ILGLQLMRVAWYAGFSAKTRKEQRSYP 327

[Close]

BLAST of Spo24238.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EAH6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018600 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 6.500e-154
Identity = 272/321 (84.74%), Postives = 294/321 (91.59%), Query Frame = 1


		  
Query: 2   SSLIRTPVPNVTVAGFRYQSQKHRRLTNNHVGFSLPKLHLNRLSVCCSKLTPWEPTPLTY 61
           SSLIRTP P++TV GF Y SQK+ RLTN+  G SLPKL +NRLSVCCSKLTPWEPTPLTY
Sbjct: 3   SSLIRTPFPSITVTGFCYPSQKYGRLTNHRHGLSLPKLKMNRLSVCCSKLTPWEPTPLTY 62

Query: 62  APTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWILGP 121
           APTDEAEPE +EET N+FDTLKFE  AAT AA+SEKL Q  S  S+ AGFLKWPLWILGP
Sbjct: 63  APTDEAEPEYVEETANIFDTLKFEDAAATAAADSEKLTQSQSKPSKEAGFLKWPLWILGP 122

Query: 122 GFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKDPME 181
            FLLVTGMVPTLWLPISSIFLG NIASLL+LVGLDCIFN+GA LFLLMAHSTTQPKDPME
Sbjct: 123 AFLLVTGMVPTLWLPISSIFLGSNIASLLALVGLDCIFNLGATLFLLMAHSTTQPKDPME 182

Query: 182 APQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLLSVQ 241
           +P+SKAP SYRFWNMFASI+GYAIPLALL+GS KG LQPQLAPISY+VLLGPYLLLLSVQ
Sbjct: 183 SPKSKAPFSYRFWNMFASIVGYAIPLALLFGSQKGFLQPQLAPISYLVLLGPYLLLLSVQ 242

Query: 242 MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 301
           MLTELLTWHW+SPVWLVTPV+YEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI
Sbjct: 243 MLTELLTWHWKSPVWLVTPVIYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 302

Query: 302 LGLQLMRVAWYAGFSAKTRKE 323
           LGLQLMRVAW+AGFSA+ +K+
Sbjct: 303 LGLQLMRVAWFAGFSARNQKK 323

[Close]

BLAST of Spo24238.1 vs. UniProtKB/TrEMBL
Match: U7E0P8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0176s00200g PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 7.500e-110
Identity = 197/324 (60.80%), Postives = 251/324 (77.47%), Query Frame = 1


		  
Query: 1   MSSLIRTPVPNVTVAGFRYQSQKHRRLTN--NHVGFSLPKLHLNRLSVCCSKLTPWEPTP 60
           M+SL++ P    T+   +   +K + L+N   H G   P++H+N  +VCC+KLTPWEP+P
Sbjct: 1   MASLVKAPPTLSTINSHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSP 60

Query: 61  LTYAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWI 120
           +TYAPT +A   +L++T N+F+TLK E TA  PA  SE+L    +       FLKWP+W+
Sbjct: 61  VTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNQSLVQFQFLKWPMWL 120

Query: 121 LGPGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKD 180
           LGP  LL TGMVPTLWLP+SS+FLGPNIASLLSL+GLDCIFN+GA LFLLMA S ++ K+
Sbjct: 121 LGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKN 180

Query: 181 PMEAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLL 240
             ++  SK PLSY+FWNM A++ G+ IPL  L GS KG LQPQL  I + VLLGPY+LLL
Sbjct: 181 QAQSCNSKPPLSYKFWNMVATVSGFVIPLMALLGSQKGTLQPQLPFIPFAVLLGPYMLLL 240

Query: 241 SVQMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWW 300
           SVQ+LTELLTWHWQSPVWLVTPVVYE+YR+LQLMRGLKL AE+SAP WM+H IRGLV WW
Sbjct: 241 SVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWW 300

Query: 301 VLILGLQLMRVAWYAGFSAKTRKE 323
           +LILG+QLM VAW+AGF+A+++++
Sbjct: 301 ILILGVQLMSVAWFAGFAAQSQQQ 324

[Close]

BLAST of Spo24238.1 vs. UniProtKB/TrEMBL
Match: A9PJH0_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 1.100e-108
Identity = 195/324 (60.19%), Postives = 249/324 (76.85%), Query Frame = 1


		  
Query: 1   MSSLIRTPVPNVTVAGFRYQSQKHRRLTN--NHVGFSLPKLHLNRLSVCCSKLTPWEPTP 60
           M+SL++ P    T+   +   +K + L+N   H G   P++H+N  +VCC+KLTPWEP+P
Sbjct: 1   MASLVKAPPTMSTINAHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCAKLTPWEPSP 60

Query: 61  LTYAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWI 120
           +TYAPT +A   +L++T N+F+TLK E TA  PA  SE+L    +       FLKWP+W+
Sbjct: 61  VTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNRSLVQFQFLKWPMWL 120

Query: 121 LGPGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKD 180
           LGP  LL TGMVPTLWLP+SS+FLGPNIASLLSL+GLDCIFN+GA LFLLMA S ++ K+
Sbjct: 121 LGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKN 180

Query: 181 PMEAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLL 240
             +   SK PLSY+FWN+ A++ G+ IPL  L GS KG L PQL  I + VLLGPY+LLL
Sbjct: 181 QAQTCNSKPPLSYKFWNVVATVSGFVIPLMALLGSQKGTLLPQLPFIPFAVLLGPYMLLL 240

Query: 241 SVQMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWW 300
           SVQ+LTELLTWHWQSPVWLVTPVVYE+YR+LQLMRGLKL AE+SAP WM+H IRGLV WW
Sbjct: 241 SVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWW 300

Query: 301 VLILGLQLMRVAWYAGFSAKTRKE 323
           +LILG+QLM VAW+AGF+A+++++
Sbjct: 301 ILILGVQLMSVAWFAGFAARSQQQ 324

[Close]

BLAST of Spo24238.1 vs. UniProtKB/TrEMBL
Match: U5FT19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05990g PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.400e-108
Identity = 195/324 (60.19%), Postives = 249/324 (76.85%), Query Frame = 1


		  
Query: 1   MSSLIRTPVPNVTVAGFRYQSQKHRRLTN--NHVGFSLPKLHLNRLSVCCSKLTPWEPTP 60
           M+SL++ P    T+   +   +K + L+N   H G   P++H+N  +VCC+KLTPWEP+P
Sbjct: 21  MASLVKAPPTLSTINSHQVHLRKLKLLSNLNMHHGLRFPRIHVNHTTVCCTKLTPWEPSP 80

Query: 61  LTYAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKLAQKTSNKSQGAGFLKWPLWI 120
           +TYAPT +A   +L++T N+F+TLK E TA  PA  SE+L    +       FLKWP+W+
Sbjct: 81  VTYAPTIDASGNLLKKTSNIFETLKSEDTAEAPATNSEELTDTKNQSLVQFQFLKWPMWL 140

Query: 121 LGPGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNIGAMLFLLMAHSTTQPKD 180
           LGP  LL TGMVPTLWLP+SS+FLGPNIASLLSL+GLDCIFN+GA LFLLMA S ++ K+
Sbjct: 141 LGPSLLLTTGMVPTLWLPLSSVFLGPNIASLLSLIGLDCIFNLGATLFLLMADSCSRSKN 200

Query: 181 PMEAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLLQPQLAPISYMVLLGPYLLLL 240
             +   SK PLSY+FWN+ A++ G+ IPL  L GS KG L PQL  I + VLLGPY+LLL
Sbjct: 201 QAQTCNSKPPLSYKFWNVVATVSGFVIPLMALLGSQKGTLLPQLPFIPFAVLLGPYMLLL 260

Query: 241 SVQMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWW 300
           SVQ+LTELLTWHWQSPVWLVTPVVYE+YR+LQLMRGLKL AE+SAP WM+H IRGLV WW
Sbjct: 261 SVQILTELLTWHWQSPVWLVTPVVYESYRLLQLMRGLKLGAELSAPTWMLHMIRGLVSWW 320

Query: 301 VLILGLQLMRVAWYAGFSAKTRKE 323
           +LILG+QLM VAW+AGF+A+++++
Sbjct: 321 ILILGVQLMSVAWFAGFAARSQQQ 344

[Close]

BLAST of Spo24238.1 vs. TAIR (Arabidopsis)
Match: AT3G60590.3 (unknown protein)

HSP 1 Score: 335.5 bits (859), Expect = 3.700e-92
Identity = 166/286 (58.04%), Postives = 219/286 (76.57%), Query Frame = 1


		  
Query: 46  VCCSKLTPWEPTPLTYAPTDEAEPEILEETPNLFDTLKFEGTAATPAAESEKL----AQK 105
           +C  KL+ WEP+P  +A  +EA   +L++T N+F+++  E      +AE EK+     Q+
Sbjct: 121 LCTPKLSQWEPSPFIHASAEEAADIVLDKTANVFESIVSE------SAEEEKVDMSAQQR 180

Query: 106 TSNKSQGAGFLKWPLWILGPGFLLVTGMVPTLWLPISSIFLGPNIASLLSLVGLDCIFNI 165
           T+++ Q    LKWP+W+LGP  LL +GM PTLWLP+SS+FLG N+ SLLSL+GLDCIFN+
Sbjct: 181 TNSQVQ---VLKWPIWLLGPSVLLTSGMAPTLWLPLSSVFLGSNVVSLLSLIGLDCIFNL 240

Query: 166 GAMLFLLMAHSTTQPKDPMEAPQSKAPLSYRFWNMFASIIGYAIPLALLYGSHKGLL--- 225
           GA LFLLMA S  +PKDP ++  SK P SY+FWNMF+ IIG+ +P+ LL+GS  GLL   
Sbjct: 241 GATLFLLMADSCARPKDPSQSCNSKPPFSYKFWNMFSLIIGFLVPMLLLFGSQSGLLASL 300

Query: 226 QPQLAPISYMVLLGPYLLLLSVQMLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLS 285
           QPQ+  +S  V+L PY +LL+VQ LTE+LTWHWQSPVWLVTPVVYEAYR+LQLMRGL LS
Sbjct: 301 QPQIPFLSSAVILFPYFILLAVQTLTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLS 360

Query: 286 AEISAPAWMMHTIRGLVCWWVLILGLQLMRVAWYAGFSAKTRKEQR 325
           AE++AP W++H +RGLV WWVLILG+QLMRVAW+AGF+++T   Q+
Sbjct: 361 AEVNAPVWVVHMLRGLVSWWVLILGMQLMRVAWFAGFASRTTTGQQ 397

The following BLAST results are available for this feature:

BLAST of Spo24238.1 vs. NCBI nr
BLAST of Spo24238.1 vs. UniProtKB/TrEMBL
BLAST of Spo24238.1 vs. ExPASy Swiss-Prot
BLAST of Spo24238.1 vs. TAIR (Arabidopsis)

BLAST of Spo24238.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902230067\|gb\|KNA21697.1\|	2.0e-185	100.	hypothetical protein SOVF_0402...	[more]
gi\|731361090\|ref\|XP_010692169.1\|	9.3e-154	84.7	PREDICTED: uncharacterized pro...	[more]
gi\|743788488\|ref\|XP_011033648.1\|	1.7e-110	61.1	PREDICTED: uncharacterized pro...	[more]
gi\|743788490\|ref\|XP_011033660.1\|	3.7e-110	60.8	PREDICTED: uncharacterized pro...	[more]
gi\|743788494\|ref\|XP_011033667.1\|	3.7e-110	60.8	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo24238.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RSC1_SPIOL	1.4e-185	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8EAH6_BETVU	6.5e-154	84.7	Uncharacterized protein OS=Bet...	[more]
U7E0P8_POPTR	7.5e-110	60.8	Uncharacterized protein OS=Pop...	[more]
A9PJH0_9ROSI	1.1e-108	60.1	Putative uncharacterized prote...	[more]
U5FT19_POPTR	1.4e-108	60.1	Uncharacterized protein OS=Pop...	[more]

BLAST of Spo24238.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo24238.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G60590.3	3.7e-92	58.0	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33918	FAMILY NOT NAMED	coord: 1..326 score: 1.4E
None	No IPR available	PANTHER	PTHR33918:SF3	SUBFAMILY NOT NAMED	coord: 1..326 score: 1.4E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0016020	membrane