Spo21697.1 (mRNA)

Overview
NameSpo21697.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionrRNA N-glycosidase (3.2.2.22)
Locationchr2 : 56983149 .. 56983523 (+)
Sequence length375
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGGAAAACAATGAAGGCTTTTGTGGTGGTAGCGATATCAATAATGGTGATACTTGAGCCTAGTTTCGCAGCATCTGATCTAAGTTTGGATGTTGGGAGTGCTACAAAAACAACCTACTCCAAACTGTTAACCGACATTCGTGATAATGTCAAGGATCCGAAACTCAAGTATGGAGGTACCAACATACCAGTAATGGCAAAAGAAGGAACATCCAAGTTACTTTTGATTGATCTCAAGTCATCAGATGGAAAGACAATCACGATCGGTATCAGTAAAGAAGATAAGTTCAATTTATATGTGCAAGGCTATCTTGACAAGATTACAATTAAAAATAAAGAGGTTTCTAGAGCACATATTGTTCCGGTATGA

mRNA sequence

ATGGAAGGGAAAACAATGAAGGCTTTTGTGGTGGTAGCGATATCAATAATGGTGATACTTGAGCCTAGTTTCGCAGCATCTGATCTAAGTTTGGATGTTGGGAGTGCTACAAAAACAACCTACTCCAAACTGTTAACCGACATTCGTGATAATGTCAAGGATCCGAAACTCAAGTATGGAGGTACCAACATACCAGTAATGGCAAAAGAAGGAACATCCAAGTTACTTTTGATTGATCTCAAGTCATCAGATGGAAAGACAATCACGATCGGTATCAGTAAAGAAGATAAGTTCAATTTATATGTGCAAGGCTATCTTGACAAGATTACAATTAAAAATAAAGAGGTTTCTAGAGCACATATTGTTCCGGTATGA

Coding sequence (CDS)

ATGGAAGGGAAAACAATGAAGGCTTTTGTGGTGGTAGCGATATCAATAATGGTGATACTTGAGCCTAGTTTCGCAGCATCTGATCTAAGTTTGGATGTTGGGAGTGCTACAAAAACAACCTACTCCAAACTGTTAACCGACATTCGTGATAATGTCAAGGATCCGAAACTCAAGTATGGAGGTACCAACATACCAGTAATGGCAAAAGAAGGAACATCCAAGTTACTTTTGATTGATCTCAAGTCATCAGATGGAAAGACAATCACGATCGGTATCAGTAAAGAAGATAAGTTCAATTTATATGTGCAAGGCTATCTTGACAAGATTACAATTAAAAATAAAGAGGTTTCTAGAGCACATATTGTTCCGGTATGA

Protein sequence

MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAHIVPV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo21697Spo21697gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo21697.1Spo21697.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21697.1.exon.1Spo21697.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21697.1.CDS.1Spo21697.1.CDS.1CDS


Homology
[Close]
BLAST of Spo21697.1 vs. NCBI nr
Match: gi|902225393|gb|KNA20053.1| (hypothetical protein SOVF_055960 [Spinacia oleracea])

HSP 1 Score: 204.9 bits (520), Expect = 8.100e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

		  

Query: 1   MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG 60
           MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG
Sbjct: 1   MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG 60

Query: 61  GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD 108
           GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD
Sbjct: 61  GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD 107
[Close]
BLAST of Spo21697.1 vs. NCBI nr
Match: gi|902225392|gb|KNA20052.1| (hypothetical protein SOVF_055950 [Spinacia oleracea])

HSP 1 Score: 194.5 bits (493), Expect = 1.100e-46
Identity = 105/124 (84.68%), Postives = 109/124 (87.90%), Query Frame = 1 

		  

Query: 1   MEGKTMKAFVVVAISIMVIL-EPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKY 60
           ME KT+K+FVVVAISI VIL E    AS L LDVG ATKTTYSKLLTDIRDNVKDPKLKY
Sbjct: 1   MERKTVKSFVVVAISIWVILVEAIITASGLDLDVGIATKTTYSKLLTDIRDNVKDPKLKY 60

Query: 61  GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRA 120
           GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK+   N+EV RA
Sbjct: 61  GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKVVENNREVFRA 120

Query: 121 HIVP 124
           HI P
Sbjct: 121 HIFP 124
[Close]
BLAST of Spo21697.1 vs. NCBI nr
Match: gi|731354508|ref|XP_010688634.1| (PREDICTED: ribosome-inactivating protein PD-L3/PD-L4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 109.4 bits (272), Expect = 4.600e-21
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1 

		  

Query: 6   MKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP 65
           M+ ++ V ISI ++LEPS AA DLS D+GSATKT YSKLL+D+RD VKDPKLKYG TN+P
Sbjct: 1   MRVWLAVVISIWLLLEPSCAA-DLSFDLGSATKTIYSKLLSDVRDKVKDPKLKYGDTNLP 60

Query: 66  VM-AKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK 109
           V+ A     K LL+D+K+ +G TIT  ++K D   LY+  YLDK
Sbjct: 61  VIAAPSNPPKYLLVDIKTPEGATITFALNKND---LYLDAYLDK 100
[Close]
BLAST of Spo21697.1 vs. NCBI nr
Match: gi|731354506|ref|XP_010688633.1| (PREDICTED: protein synthesis inhibitor PD-S2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 108.2 bits (269), Expect = 1.000e-20
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 1 

		  

Query: 6   MKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP 65
           M+ ++ V ISI ++LEPS AA DL+ D+GSATKT YSKLL+D+RD VKDPKLKYG TN+P
Sbjct: 1   MRVWLAVVISIWLVLEPSCAA-DLTFDLGSATKTIYSKLLSDVRDKVKDPKLKYGDTNLP 60

Query: 66  VM-AKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           V+ A     K LL+D+K+ +G  IT  ++K D   LY+ GYLD+   K     RAH
Sbjct: 61  VIAAPSNPPKYLLVDIKTPEGSKITFALNKND---LYLDGYLDQFEGK----PRAH 108
[Close]
BLAST of Spo21697.1 vs. NCBI nr
Match: gi|870850465|gb|KMT02565.1| (hypothetical protein BVRB_9g202520 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 107.5 bits (267), Expect = 1.800e-20
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1 

		  

Query: 10  VVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP-VMA 69
           + VAISI ++LEPS AA DLS D+GSATKT +SKLL+D+RD VKDPKLKYG TN+P + A
Sbjct: 7   LAVAISIWLVLEPSCAA-DLSFDLGSATKTIFSKLLSDVRDKVKDPKLKYGDTNVPAIAA 66

Query: 70  KEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK 109
               SK LL+D+K+ +G TIT  ++K D   +Y+  YLDK
Sbjct: 67  PSNPSKYLLVDIKTPEGATITFALNKND---IYLDAYLDK 102
[Close]
BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKN2_SPIOL (rRNA N-glycosidase OS=Spinacia oleracea GN=SOVF_055960 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.600e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

		  

Query: 1   MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG 60
           MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG
Sbjct: 1   MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG 60

Query: 61  GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD 108
           GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD
Sbjct: 61  GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD 107
[Close]
BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMG6_SPIOL (rRNA N-glycosidase OS=Spinacia oleracea GN=SOVF_055950 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 7.600e-47
Identity = 105/124 (84.68%), Postives = 109/124 (87.90%), Query Frame = 1 

		  

Query: 1   MEGKTMKAFVVVAISIMVIL-EPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKY 60
           ME KT+K+FVVVAISI VIL E    AS L LDVG ATKTTYSKLLTDIRDNVKDPKLKY
Sbjct: 1   MERKTVKSFVVVAISIWVILVEAIITASGLDLDVGIATKTTYSKLLTDIRDNVKDPKLKY 60

Query: 61  GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRA 120
           GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK+   N+EV RA
Sbjct: 61  GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKVVENNREVFRA 120

Query: 121 HIVP 124
           HI P
Sbjct: 121 HIFP 124
[Close]
BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRN5_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202500 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.200e-21
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1 

		  

Query: 6   MKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP 65
           M+ ++ V ISI ++LEPS AA DLS D+GSATKT YSKLL+D+RD VKDPKLKYG TN+P
Sbjct: 1   MRVWLAVVISIWLLLEPSCAA-DLSFDLGSATKTIYSKLLSDVRDKVKDPKLKYGDTNLP 60

Query: 66  VM-AKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK 109
           V+ A     K LL+D+K+ +G TIT  ++K D   LY+  YLDK
Sbjct: 61  VIAAPSNPPKYLLVDIKTPEGATITFALNKND---LYLDAYLDK 100
[Close]
BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMU1_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202490 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.200e-21
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 1 

		  

Query: 6   MKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP 65
           M+ ++ V ISI ++LEPS AA DL+ D+GSATKT YSKLL+D+RD VKDPKLKYG TN+P
Sbjct: 1   MRVWLAVVISIWLVLEPSCAA-DLTFDLGSATKTIYSKLLSDVRDKVKDPKLKYGDTNLP 60

Query: 66  VM-AKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           V+ A     K LL+D+K+ +G  IT  ++K D   LY+ GYLD+   K     RAH
Sbjct: 61  VIAAPSNPPKYLLVDIKTPEGSKITFALNKND---LYLDGYLDQFEGK----PRAH 108
[Close]
BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMK7_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202520 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.200e-20
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1 

		  

Query: 10  VVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP-VMA 69
           + VAISI ++LEPS AA DLS D+GSATKT +SKLL+D+RD VKDPKLKYG TN+P + A
Sbjct: 7   LAVAISIWLVLEPSCAA-DLSFDLGSATKTIFSKLLSDVRDKVKDPKLKYGDTNVPAIAA 66

Query: 70  KEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK 109
               SK LL+D+K+ +G TIT  ++K D   +Y+  YLDK
Sbjct: 67  PSNPSKYLLVDIKTPEGATITFALNKND---IYLDAYLDK 102
[Close]
BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Match: RIP4_SAPOF (Ribosome-inactivating protein saporin-4 (Fragment) OS=Saponaria officinalis GN=SAP4 PE=3 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 7.400e-11
Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 1 

		  

Query: 6   MKAFVVVAISIMVILEPSFAASD----LSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGG 65
           MK +VV  I+ +++   ++  +D    ++LD+ + T   YS  +  IR+NVKDP LKYGG
Sbjct: 1   MKIYVVATIAWILLQFSAWTTTDAVTSITLDLVNPTAGQYSSFVDKIRNNVKDPNLKYGG 60

Query: 66  TNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           T+I V+      K L I+ +SS G T+++G+ ++   NLYV  YL    + N  V+RA+
Sbjct: 61  TDIAVIGPPSKGKFLRINFQSSRG-TVSLGLKRD---NLYVVAYL---AMDNTNVNRAY 112
[Close]
BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Match: RIP2_SAPOF (Ribosome-inactivating protein saporin-2 OS=Saponaria officinalis GN=SAP2 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.400e-11
Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 1 

		  

Query: 6   MKAFVVVAISIMVILEPSFAASD----LSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGG 65
           MK +VV  I+ +++   ++  +D    ++LD+ + T   YS  +  IR+NVKDP LKYGG
Sbjct: 1   MKIYVVATIAWILLQFSAWTTTDAVTSITLDLVNPTAGQYSSFVDKIRNNVKDPNLKYGG 60

Query: 66  TNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           T+I V+      K L I+ +SS G T+++G+ ++   NLYV  YL    + N  V+RA+
Sbjct: 61  TDIAVIGPPSKDKFLRINFQSSRG-TVSLGLKRD---NLYVVAYL---AMDNTNVNRAY 112
[Close]
BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Match: RIP6_SAPOF (Ribosome-inactivating protein saporin-6 OS=Saponaria officinalis GN=SAP6 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 7.400e-11
Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 1 

		  

Query: 6   MKAFVVVAISIMVILEPSFAASD----LSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGG 65
           MK +VV  I+ +++   ++  +D    ++LD+ + T   YS  +  IR+NVKDP LKYGG
Sbjct: 1   MKIYVVATIAWILLQFSAWTTTDAVTSITLDLVNPTAGQYSSFVDKIRNNVKDPNLKYGG 60

Query: 66  TNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           T+I V+      K L I+ +SS G T+++G+ ++   NLYV  YL    + N  V+RA+
Sbjct: 61  TDIAVIGPPSKEKFLRINFQSSRG-TVSLGLKRD---NLYVVAYL---AMDNTNVNRAY 112
[Close]
BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Match: RIP1_PHYAM (Antiviral protein I OS=Phytolacca americana GN=PAP1 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 2.800e-10
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 1 

		  

Query: 6   MKAFVVVAISIMVILEPS--FAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTN 65
           MK+ +VV ISI +IL P+  +A + +  +VGS T + Y+  L D+R+  KDP LK  G  
Sbjct: 1   MKSMLVVTISIWLILAPTSTWAVNTIIYNVGSTTISKYATFLNDLRNEAKDPSLKCYG-- 60

Query: 66  IPVMAKEGTS-KLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD 108
           IP++    T+ K +L++L+ S+ KTIT+ + +    NLYV GY D
Sbjct: 61  IPMLPNTNTNPKYVLVELQGSNKKTITLMLRRN---NLYVMGYSD 100
[Close]
BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Match: RIP7_SAPOF (Ribosome-inactivating protein saporin-7 OS=Saponaria officinalis GN=SAP7 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.700e-10
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 1 

		  

Query: 27  SDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIPVMAKEGTSKLLLIDLKSSDGK 86
           + ++LD+ + T   YS  +  IR+NVKDP LKYGGT+I V+      K L I+ +SS G 
Sbjct: 2   TSITLDLVNPTAGQYSSFVDKIRNNVKDPNLKYGGTDIAVIGPPSKEKFLRINFQSSRG- 61

Query: 87  TITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           T+++G+ ++   NLYV  YL    + N  V+RA+
Sbjct: 62  TVSLGLKRD---NLYVVAYL---AMDNTNVNRAY 88
The following BLAST results are available for this feature:
BLAST of Spo21697.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902225393|gb|KNA20053.1|8.1e-50100.hypothetical protein SOVF_0559... [more]
gi|902225392|gb|KNA20052.1|1.1e-4684.6hypothetical protein SOVF_0559... [more]
gi|731354508|ref|XP_010688634.1|4.6e-2157.6PREDICTED: ribosome-inactivati... [more]
gi|731354506|ref|XP_010688633.1|1.0e-2053.4PREDICTED: protein synthesis i... [more]
gi|870850465|gb|KMT02565.1|1.8e-2058.0hypothetical protein BVRB_9g20... [more]
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BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RKN2_SPIOL5.6e-50100.rRNA N-glycosidase OS=Spinacia... [more]
A0A0K9RMG6_SPIOL7.6e-4784.6rRNA N-glycosidase OS=Spinacia... [more]
A0A0J8BRN5_BETVU3.2e-2157.6rRNA N-glycosidase OS=Beta vul... [more]
A0A0J8BMU1_BETVU7.2e-2153.4rRNA N-glycosidase OS=Beta vul... [more]
A0A0J8BMK7_BETVU1.2e-2058.0rRNA N-glycosidase OS=Beta vul... [more]
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BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RIP4_SAPOF7.4e-1136.9Ribosome-inactivating protein ... [more]
RIP2_SAPOF7.4e-1136.9Ribosome-inactivating protein ... [more]
RIP6_SAPOF7.4e-1136.9Ribosome-inactivating protein ... [more]
RIP1_PHYAM2.8e-1040.9Antiviral protein I OS=Phytola... [more]
RIP7_SAPOF3.7e-1040.4Ribosome-inactivating protein ... [more]
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BLAST of Spo21697.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001574Ribosome-inactivating proteinPFAMPF00161RIPcoord: 37..106
score: 2.
IPR001574Ribosome-inactivating proteinunknownSSF56371Ribosome inactivating proteins (RIP)coord: 28..111
score: 3.01
IPR016138Ribosome-inactivating protein, subdomain 1GENE3D3.40.420.10coord: 28..111
score: 1.4

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0017148 negative regulation of translation
molecular_function GO:0030598 rRNA N-glycosylase activity