Spo12759.1 (mRNA)

Overview
NameSpo12759.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description60S ribosomal protein L12
Locationchr3 : 327782 .. 328282 (-)
Sequence length501
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCAAAGCTCGACCCTTCCCAAGTTGTCGAAGTTTACGTCCGAGTGACTGGTGGTGAAGTCGGCGCCGCCTCCTCACTCGCTCCCAAGATCGGTCCACTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGTCTCCGTGTCACCGTCAAGCTTACCGTCCAAAACCGTCAGGCTAAAGTTAGCGTTGTTCCTTCCGCCGCTGCTCTGGTTATCAAGGCGTTGAAGGAGCCGGAGCGCGACCGCAAGAAGGTGAAGAACATCAAGCACACTGGTAACATCTCCATTGAGGACGTCATCGAGATTGCTAAGATTATGAAGCCTCGATCTATGGCGAAGGAATTGAAGGGCACTGTGAAGGAGATTCTGGGTACTTGTGTTTCTGTTGGGTGTACTGTTGATGGCAAGGATCCTAAGGATTTGCAGCAGGAGATTGCTGATGACGAGGTTGAAATTCCTGAGAACTAA

mRNA sequence

ATGCCTCCAAAGCTCGACCCTTCCCAAGTTGTCGAAGTTTACGTCCGAGTGACTGGTGGTGAAGTCGGCGCCGCCTCCTCACTCGCTCCCAAGATCGGTCCACTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGTCTCCGTGTCACCGTCAAGCTTACCGTCCAAAACCGTCAGGCTAAAGTTAGCGTTGTTCCTTCCGCCGCTGCTCTGGTTATCAAGGCGTTGAAGGAGCCGGAGCGCGACCGCAAGAAGGTGAAGAACATCAAGCACACTGGTAACATCTCCATTGAGGACGTCATCGAGATTGCTAAGATTATGAAGCCTCGATCTATGGCGAAGGAATTGAAGGGCACTGTGAAGGAGATTCTGGGTACTTGTGTTTCTGTTGGGTGTACTGTTGATGGCAAGGATCCTAAGGATTTGCAGCAGGAGATTGCTGATGACGAGGTTGAAATTCCTGAGAACTAA

Coding sequence (CDS)

ATGCCTCCAAAGCTCGACCCTTCCCAAGTTGTCGAAGTTTACGTCCGAGTGACTGGTGGTGAAGTCGGCGCCGCCTCCTCACTCGCTCCCAAGATCGGTCCACTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAGGAAACCGCCAAGGACTGGAAGGGTCTCCGTGTCACCGTCAAGCTTACCGTCCAAAACCGTCAGGCTAAAGTTAGCGTTGTTCCTTCCGCCGCTGCTCTGGTTATCAAGGCGTTGAAGGAGCCGGAGCGCGACCGCAAGAAGGTGAAGAACATCAAGCACACTGGTAACATCTCCATTGAGGACGTCATCGAGATTGCTAAGATTATGAAGCCTCGATCTATGGCGAAGGAATTGAAGGGCACTGTGAAGGAGATTCTGGGTACTTGTGTTTCTGTTGGGTGTACTGTTGATGGCAAGGATCCTAAGGATTTGCAGCAGGAGATTGCTGATGACGAGGTTGAAATTCCTGAGAACTAA

Protein sequence

MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPRSMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo12759Spo12759gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo12759.1Spo12759.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12759.1.CDS.1Spo12759.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12759.1.exon.1Spo12759.1.exon.1exon


Homology
[Close]
BLAST of Spo12759.1 vs. NCBI nr
Match: gi|902217667|gb|KNA17853.1| (hypothetical protein SOVF_076720 [Spinacia oleracea])

HSP 1 Score: 318.9 bits (816), Expect = 5.100e-84
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 166
[Close]
BLAST of Spo12759.1 vs. NCBI nr
Match: gi|731356205|ref|XP_010689548.1| (PREDICTED: 60S ribosomal protein L12-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 307.0 bits (785), Expect = 2.000e-80
Identity = 156/166 (93.98%), Postives = 164/166 (98.80%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQ+VEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKIDPSQIVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNIS++DVIEIA+IMKPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISLDDVIEIARIMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQE+ D EVEIP+N
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEVEDGEVEIPDN 166
[Close]
BLAST of Spo12759.1 vs. NCBI nr
Match: gi|731345787|ref|XP_010684100.1| (PREDICTED: 60S ribosomal protein L12-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 303.5 bits (776), Expect = 2.200e-79
Identity = 153/166 (92.17%), Postives = 163/166 (98.19%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKIDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKHTGNIS++DVIEIA++MKPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHTGNISLDDVIEIARVMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDG DPKDLQQE+ D EVEIPEN
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGSDPKDLQQEVEDGEVEIPEN 166
[Close]
BLAST of Spo12759.1 vs. NCBI nr
Match: gi|976902840|gb|KVH90774.1| (Ribosomal protein L11 [Cynara cardunculus var. scolymus])

HSP 1 Score: 302.8 bits (774), Expect = 3.800e-79
Identity = 154/166 (92.77%), Postives = 164/166 (98.80%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK DPSQVV+VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKH+GNIS++DVIEIAK+M+PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIAKVMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKEL+GTVKEILGTCVSVGCTVDGKDPKDLQQEIAD +VEIP++
Sbjct: 121 SMAKELQGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166
[Close]
BLAST of Spo12759.1 vs. NCBI nr
Match: gi|40287508|gb|AAR83868.1| (60S ribosomal protein L12 [Capsicum annuum])

HSP 1 Score: 302.0 bits (772), Expect = 6.500e-79
Identity = 154/166 (92.77%), Postives = 162/166 (97.59%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQVVEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKVDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKK KNIKH GNIS++DVIEIAK+M+PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMQPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAK+L GTVKEILGTCVSVGCTVDGKDPKDLQQEIAD +VEIPEN
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPEN 166
[Close]
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S456_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_002290 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 3.600e-84
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 166
[Close]
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BQ55_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g207930 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.400e-80
Identity = 156/166 (93.98%), Postives = 164/166 (98.80%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQ+VEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKIDPSQIVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNIS++DVIEIA+IMKPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISLDDVIEIARIMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQE+ D EVEIP+N
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEVEDGEVEIPDN 166
[Close]
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2D9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g162160 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.600e-79
Identity = 153/166 (92.17%), Postives = 163/166 (98.19%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKIDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKHTGNIS++DVIEIA++MKPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHTGNISLDDVIEIARVMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDG DPKDLQQE+ D EVEIPEN
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGSDPKDLQQEVEDGEVEIPEN 166
[Close]
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Match: A0A118JTH4_CYNCS (Ribosomal protein L11 OS=Cynara cardunculus var. scolymus GN=Ccrd_007216 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.700e-79
Identity = 154/166 (92.77%), Postives = 164/166 (98.80%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK DPSQVV+VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKH+GNIS++DVIEIAK+M+PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIAKVMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKEL+GTVKEILGTCVSVGCTVDGKDPKDLQQEIAD +VEIP++
Sbjct: 121 SMAKELQGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166
[Close]
BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Match: Q6RJY1_CAPAN (60S ribosomal protein L12 OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.500e-79
Identity = 154/166 (92.77%), Postives = 162/166 (97.59%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQVVEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKVDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKK KNIKH GNIS++DVIEIAK+M+PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMQPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAK+L GTVKEILGTCVSVGCTVDGKDPKDLQQEIAD +VEIPEN
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPEN 166
[Close]
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=2)

HSP 1 Score: 294.7 bits (753), Expect = 6.500e-79
Identity = 149/166 (89.76%), Postives = 160/166 (96.39%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DV EIA+IM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           S+AKEL GTV+EILGTCVSVGCTVDGKDPKD+QQEI D EVEIPEN
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166
[Close]
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.400e-78
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DV EIA+IM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           S+AKEL GTV+EILGTCVSVGCTVDGKDPKDLQQEI + E+EIPEN
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166
[Close]
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.200e-78
Identity = 151/164 (92.07%), Postives = 157/164 (95.73%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK DPSQVV+VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA DWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKK KNIKH+G+IS++DVIEIAKIMK R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIP 165
           SMAKEL GTVKEIL TCVSVGCTVDGKDPKDLQQEIAD +VEIP
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIP 164
[Close]
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.100e-77
Identity = 146/164 (89.02%), Postives = 158/164 (96.34%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DVIEIAKIM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIP 165
           S+AKEL GTVKEILGTCVSVGCTVDGKDPKDLQ+EI   +++IP
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164
[Close]
BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Match: RL12_CHLRE (60S ribosomal protein L12 (Fragment) OS=Chlamydomonas reinhardtii GN=RPL12 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.200e-61
Identity = 121/156 (77.56%), Postives = 137/156 (87.82%), Query Frame = 1 

		  

Query: 10  VVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ 69
           VVEV VRVTGGEVG ASSLAPKIGPLGLSPKKIGEDIAKET KDWKGLR+TVKLTVQNRQ
Sbjct: 1   VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60

Query: 70  AKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPRSMAKELKGT 129
           AK+SV+PSAAALVIKALKEP RDRKK KNIKHTG++++ D+IEIA++M+PRS AK+L   
Sbjct: 61  AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 120

Query: 130 VKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPE 166
            KEILGT VSVGC VDGKDP+D+   I D  +EIP+
Sbjct: 121 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIPD 156
[Close]
BLAST of Spo12759.1 vs. TAIR (Arabidopsis)
Match: AT2G37190.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 294.7 bits (753), Expect = 3.700e-80
Identity = 149/166 (89.76%), Postives = 160/166 (96.39%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DV EIA+IM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           S+AKEL GTV+EILGTCVSVGCTVDGKDPKD+QQEI D EVEIPEN
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166
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BLAST of Spo12759.1 vs. TAIR (Arabidopsis)
Match: AT3G53430.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 293.5 bits (750), Expect = 8.100e-80
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DV EIA+IM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           S+AKEL GTV+EILGTCVSVGCTVDGKDPKDLQQEI + E+EIPEN
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166
[Close]
BLAST of Spo12759.1 vs. TAIR (Arabidopsis)
Match: AT5G60670.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 289.7 bits (740), Expect = 1.200e-78
Identity = 146/164 (89.02%), Postives = 158/164 (96.34%), Query Frame = 1 

		  

Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DVIEIAKIM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIP 165
           S+AKEL GTVKEILGTCVSVGCTVDGKDPKDLQ+EI   +++IP
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164
The following BLAST results are available for this feature:
BLAST of Spo12759.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902217667|gb|KNA17853.1|5.1e-84100.hypothetical protein SOVF_0767... [more]
gi|731356205|ref|XP_010689548.1|2.0e-8093.9PREDICTED: 60S ribosomal prote... [more]
gi|731345787|ref|XP_010684100.1|2.2e-7992.1PREDICTED: 60S ribosomal prote... [more]
gi|976902840|gb|KVH90774.1|3.8e-7992.7Ribosomal protein L11 [Cynara ... [more]
gi|40287508|gb|AAR83868.1|6.5e-7992.760S ribosomal protein L12 [Cap... [more]
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BLAST of Spo12759.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S456_SPIOL3.6e-84100.Uncharacterized protein OS=Spi... [more]
A0A0J8BQ55_BETVU1.4e-8093.9Uncharacterized protein OS=Bet... [more]
A0A0J8C2D9_BETVU1.6e-7992.1Uncharacterized protein OS=Bet... [more]
A0A118JTH4_CYNCS2.7e-7992.7Ribosomal protein L11 OS=Cynar... [more]
Q6RJY1_CAPAN4.5e-7992.760S ribosomal protein L12 OS=C... [more]
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BLAST of Spo12759.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL121_ARATH6.5e-7989.760S ribosomal protein L12-1 OS... [more]
RL122_ARATH1.4e-7889.160S ribosomal protein L12-2 OS... [more]
RL12_PRUAR7.2e-7892.060S ribosomal protein L12 OS=P... [more]
RL123_ARATH2.1e-7789.060S ribosomal protein L12-3 OS... [more]
RL12_CHLRE1.2e-6177.560S ribosomal protein L12 (Fra... [more]
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BLAST of Spo12759.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G37190.13.7e-8089.7Ribosomal protein L11 family p... [more]
AT3G53430.18.1e-8089.1Ribosomal protein L11 family p... [more]
AT5G60670.11.2e-7889.0Ribosomal protein L11 family p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 9..146
score: 1
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 1..166
score: 2.4E
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 13..145
score: 6.6
IPR020783Ribosomal protein L11, C-terminalGENE3D1.10.10.250coord: 82..145
score: 4.2
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 75..144
score: 3.0
IPR020783Ribosomal protein L11, C-terminalunknownSSF46906Ribosomal protein L11, C-terminal domaincoord: 76..149
score: 9.81
IPR020784Ribosomal protein L11, N-terminalGENE3D3.30.1550.10coord: 1..81
score: 4.8
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 13..70
score: 9.3
IPR020784Ribosomal protein L11, N-terminalunknownSSF54747Ribosomal L11/L12e N-terminal domaincoord: 1..87
score: 1.02
IPR020785Ribosomal protein L11, conserved sitePROSITEPS00359RIBOSOMAL_L11coord: 131..146
scor
NoneNo IPR availablePANTHERPTHR11661:SF6SUBFAMILY NOT NAMEDcoord: 1..166
score: 2.4E

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome