Spo00754.1 (mRNA)

Overview
NameSpo00754.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01430 : 75027 .. 76445 (-)
Sequence length548
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCTTCCGACACCTCTATCCATACTTTGACAGTGAGCTTGTGCCCTATCTCTATACACACGTGGCTGGCAAAAGTATATCTCCTTTTTCCTCCAAAACAATCCACTGCTTCACCATCATCATCATCATATTCTCATTTATCATCAAAACCATCAATCCACCACCAAGTCCATACGGGAATTTGTTTCAATTCAACCAAAACCATAGCCTCCAAAATTAATTTGCTTCAAATAAACGAATACTACCCACAATGAATAATTAATGGTTGAAGCATAAATCAAAAGTTTTGGAAACAACAAGAAAAAATGGTAGTGAAGCAGCAGCTAGTGGTATCAAAGTTTGTCAACGTTGGTGCGGGATTGCTTCCGTTGTTAGCTGCTCCATCTTCACTCCGCTCAATTCCCACTACACCCACACGCCGATTTTCTTTCTCATGTAATTATTCTCTCTCCGTTTTCTAGTTTAATGTTTTAATTGGGTTTTTAATTGTGCGTAATTTGTGTTTAATTTATCTTTATTGGACTTCCATTTTATAAAAATAAAAAAATTGATTCATGAGTAGGAATTGGCAGTTTGACACTTTGTTTCAGTTTGGTAAATTGTGTTATTTGATTTAATTAATTAGGGGTTGTTTGGGAGGGTTTCTAAACCTCAACACAAGTGATCCAAATACAATCATCTTGAGTATCAACACATAATATGTCAGTACCAAAATGCAAAATTGCTTAGAAATACCACCAATATAAGTCATATGTGTTATTATTGGTATTCACATAATTTGTATTGATACTAACATATTCTGTATTGGTACTCCAAATTCTGTATTGGTACTCACTTGTGTCCAATATGGACACAAGTCACTTGTGACAAAGACTTCCTCGGTTGTTTGGTGAAGCTGTTGAAGAATATTAAATATCTGGTGGTTGATTTGTCTTGCTATTATTTGGAAAGAATAAAACTATTTTGGTTGGATTTGTTTTATTTCAAGTAATTGTGATGCAAGAGAGAGCCGCTGATCAAATGCACACGAAACCGGGGAATTAGCTATTACGGAGTACCATTTGTCAAATGTGCATGAAAAATTGACAGATTCAGCAGTTTTGGCATCCAAATGTATCATATCAGATACTTAGGCCATAATGATGTTTGACAACTAGTTATTAAGTAGAAGATAGCATAGTAGATTAGCAGACTTTAATGGCGAAATGGCAAATGGGTTCGTAGGTTTGTAGGGAGTAAGTAGACTATGTAAAGTTAAGGTATTTGATAAATTAGCAAGCGCATTGGCTTTTACATTTGATTTCAGAAACTGAAATGCTGGCTGCCGGTAGGAAGAGCCTTAGGAAATTAGCAGACTGGGACAAATATGCTCTCCTTGAAGCACATCCATTGGCATGTTTCAGGTGGTCAAACATATGA

mRNA sequence

CAGCTTCCGACACCTCTATCCATACTTTGACAGTGAGCTTGTGCCCTATCTCTATACACACGTGGCTGGCAAAAGTATATCTCCTTTTTCCTCCAAAACAATCCACTGCTTCACCATCATCATCATCATATTCTCATTTATCATCAAAACCATCAATCCACCACCAAGTCCATACGGGAATTTGTTTCAATTCAACCAAAACCATAGCCTCCAAAATTAATTTGCTTCAAATAAACGAATACTACCCACAATGAATAATTAATGGTTGAAGCATAAATCAAAAGTTTTGGAAACAACAAGAAAAAATGGTAGTGAAGCAGCAGCTAGTGGTATCAAAGTTTGTCAACGTTGGTGCGGGATTGCTTCCGTTGTTAGCTGCTCCATCTTCACTCCGCTCAATTCCCACTACACCCACACGCCGATTTTCTTTCTCATAAACTGAAATGCTGGCTGCCGGTAGGAAGAGCCTTAGGAAATTAGCAGACTGGGACAAATATGCTCTCCTTGAAGCACATCCATTGGCATGTTTCAGGTGGTCAAACATATGA

Coding sequence (CDS)

ATGGTAGTGAAGCAGCAGCTAGTGGTATCAAAGTTTGTCAACGTTGGTGCGGGATTGCTTCCGTTGTTAGCTGCTCCATCTTCACTCCGCTCAATTCCCACTACACCCACACGCCGATTTTCTTTCTCATAA

Protein sequence

MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00754Spo00754gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00754.1Spo00754.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00754.1.utr5p.1Spo00754.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00754.1.CDS.2Spo00754.1.CDS.2CDS
Spo00754.1.CDS.1Spo00754.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00754.1.utr3p.1Spo00754.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00754.1.exon.2Spo00754.1.exon.2exon
Spo00754.1.exon.1Spo00754.1.exon.1exon


Homology
[Close]
BLAST of Spo00754.1 vs. NCBI nr
Match: gi|902222544|gb|KNA19203.1| (hypothetical protein SOVF_063890 [Spinacia oleracea])

HSP 1 Score: 81.6 bits (200), Expect = 3.600e-13
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

		  

Query: 1  MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS 44
          MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS
Sbjct: 1  MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS 43
[Close]
BLAST of Spo00754.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RI82_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063890 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.500e-13
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

		  

Query: 1  MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS 44
          MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS
Sbjct: 1  MVVKQQLVVSKFVNVGAGLLPLLAAPSSLRSIPTTPTRRFSFS 43
The following BLAST results are available for this feature:
BLAST of Spo00754.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902222544|gb|KNA19203.1|3.6e-13100.hypothetical protein SOVF_0638... [more]
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BLAST of Spo00754.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RI82_SPIOL2.5e-13100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo00754.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00754.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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