Spo12817.1 (mRNA)

Overview
NameSpo12817.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S20-2
Locationchr3 : 1192539 .. 1195489 (+)
Sequence length1352
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTACCCAATTAAGCCCAACAAGCCTGGGATGGAGGAAACCCAGGAGCCCACTCACAAGATCAGAATCACTCTTTCTTCTAAGGATGTCAAGAATCTCGAGAAAGGTACCAATTTTTAAGGTTTTTTAAAAAAGTTTATGGCTTTGTTGATTATTATCAGTTTTTAAGCTGCGGAAATTTTAGGGTTTAGCTCATTGCTTTAATTTTTTTTATGATTGACGATCTCAATGTAATTTCGTTGTTAAGAAATAGTTGAATTTTGTGTGTTTAATGTTAATTAGGTGATTGGATAAGTTTATATAGATTGATTATTAGGATGATGATGATGTGTGTGGGTGGTGAATAAACCTAAATAATGCTGGAGACTAATTGACATTGTTGAAGGAAATTGGGTAATATTTGTGGTTGAACATTGGGTAATATTTGTGGTTGAACATTGGGTAATATTTGTGGGTGAACATGGGGTTTTCAATTTCATATTGGTGATGATTTGCTGTAGTTGTAATACCGCGAAATATCTTTTTAATGAGTACAAGGAATTAGAAGTTGCTTCAGATTTTGATGTAATTTGACCTTACAATGTGCCCTTGGGGGGATGAGCTTTGTGTTAATACTCCTGATTGCCGGGACTTATATTTGGACAAACAATTGCTCACACGAGTGACATAGAGATTTAAATAGGAAAGAGAGGAATGTGGTTGACCTATGGAACTGAAAATATTTTAGAGAGTGATGCATCAATCTAAGCTGTAAATGGGAGCAATCTTTGTTTAGGTTTCGTTGTATGGTTGTATCTATGTAGATTGCAATTTGTTGTTGTTCTTTAAGATGTGAATGGTTTATAGTTGTGTGTTTTCGTATTACAATATAACAATGGCGTCTTTTTCTTGTATTCAGATGAACAAATTGTTTGATTTAGGGTTTATTGCTCTGGAATTTGAATTGGTTTGACTTGTAATGTTGAACAGTGTGTGCTGATCTTGTACGTGGTGCTAAGGACAAGCGTCTTCGCGTCAAGGGACCAGTAAGGATGCCCACCAAGGTTCTTAAGATTACAACAAGGAAATCTCCATGTGGTGAAGGTATGTCACAAATTTGATGAATAAGCTGATATTGTTAATTAAACAAATTGGGTTATTGATCCTCTGGAGTTCTAAAATAACTCTACAAAGTAGAATTTGAGCAATATCAATCATTGAATGAAATGTCAACATATATTATCTTTCCAAAATCCCCCCTATTTTTCTCATCAATATCCACCCCGTGATTCCCCTTCCCACTAATATTAGCCATCGATTTTAAAATGCATGGTTTAGATACAACTCTACCTTGTAGAGTTTTATTAAAACTCCATAGGATCCGGACTCAAGAAATTGGTATTTAATATTGTTGATCATGTTGGAATTATTAGGAGAACCCATGTATACAGTTTGGGATACAACATACAAGAGACCTTTGTTTCATCTTCCTGTGATGTGTTTCATGTATTCAACCGTCTACTAAAACTGAATGATAATTTTAACCTCTGAGTTCAATTCAATCTACGTAAGGATAAAAAGTCATCTGGCTGTGGCATAAGTTTCTTGTTCAGCATTATCAATATGATAATGTATTTTGTTGAGTAATTGATAGTTTGTAGGAATGGCTTTGGGTAATTATTGAGATGATCACGTAGTCTGCATACATGCTGAATATCTACATTAGGTTCTTAATTGGCCATTATTATTCATTGATCAATCCATCTTTTGCCCTATTTCAATTCTGAATAACACATTTTCCTCACGAAATAATAATCGTTCCTTGTAATTTATTTTGCAGGAACAAACACTTGGGACAGATTCGAGTTGCGTGTCCACAAGAGAGTCATCGACCTCTTCAGCTCCCCTGATGTCGTCAAGCAGATCACTTCAATCACTATTGAACCCGGTGTTGAGGTTGAGGTTACAATTGCAGACTCTTAGATGTCCTGCCATGATATGTTTTAGGGCTTTTGTAGTTGTCCCTATATATAGTGGTGCTCCTACTTACTCGGAATTTTGGAGATAACTGAAATTGTTTGTTGGAAGAGAGATATTTTCATTTAGTTATTAATGTTATCATGTTTTCATTGAACGTGCGTTGTTTCTCCATGTTTATCAATAGAACTCTCCAGTTTTGAGTATGGTTACCGGAAATTTTGTTCAATTGGTGAATCTTTTTTGCAAGATCAAAATGTTTCTTGTATTCACTTTGTGTTTATATGAGTGATGTTCACAACAAGTCTCGTGTGTGATCATTGTTACTGTGTACAAGAGCAAGTGCAATTACCGAGCAGCATAAACACGGGCTATAAAGATCGCAGTTTTCTCCTTGGCATTCTTCGATAGCTCTGATCTGCAGTCAGCAGTATCGGGTGGGTGTATCGAGTTTACTGTCGAGTATATTATGCAGAAATTCGGGTTCAAAATTGTCAATAGTTTGATTTCCTTCCATTTGTGCCTATTTATATCTTCTTTGTGTGTTCCCTCTCATTTGCCCTACCTACAAAGGTTCGAAATGTGCTAATATCACACCACTACCTTAATTTTTTTACCTCTTATTTTTGAGTTCCGGTGAATCGTATTATTCAAATCTTTCGTACATAAAACTCCATGTTCGATTCTACACATTTGCACAATTTACATATCATTAGTCCATAGCTTATCTCACTCTTATTTTCTTGGTTTGCATATACTTCCTCCGTCTCCTTTCCCCATTAAATTTTTCTTCACATAAATTGGTCAATGTGGCAAGTAAAATAAGACACTTGACTCATAACCCGACCGGAATCGAATTCGAGTGACTTTAATTTAACCGATTGACCAATTTATCATATTTTGTAGTAAAATTAAGTTTTACTTGGTTCTGCTAATTTTTTGACAAAACTCGATATTGACTCGAAATTAAACCTGTACCTTATATATTGCCT

mRNA sequence

ATGGCGTACCCAATTAAGCCCAACAAGCCTGGGATGGAGGAAACCCAGGAGCCCACTCACAAGATCAGAATCACTCTTTCTTCTAAGGATGTCAAGAATCTCGAGAAAGTGTGTGCTGATCTTGTACGTGGTGCTAAGGACAAGCGTCTTCGCGTCAAGGGACCAGTAAGGATGCCCACCAAGGTTCTTAAGATTACAACAAGGAAATCTCCATGTGGTGAAGGAACAAACACTTGGGACAGATTCGAGTTGCGTGTCCACAAGAGAGTCATCGACCTCTTCAGCTCCCCTGATGTCGTCAAGCAGATCACTTCAATCACTATTGAACCCGGTGTTGAGGTTGAGGTTACAATTGCAGACTCTTAGATGTCCTGCCATGATATGTTTTAGGGCTTTTGTAGTTGTCCCTATATATAGTGGTGCTCCTACTTACTCGGAATTTTGGAGATAACTGAAATTGTTTGTTGGAAGAGAGATATTTTCATTTAGTTATTAATGTTATCATGTTTTCATTGAACGTGCGTTGTTTCTCCATGTTTATCAATAGAACTCTCCAGTTTTGAGTATGGTTACCGGAAATTTTGTTCAATTGGTGAATCTTTTTTGCAAGATCAAAATGTTTCTTGTATTCACTTTGTGTTTATATGAGTGATGTTCACAACAAGTCTCGTGTGTGATCATTGTTACTGTGTACAAGAGCAAGTGCAATTACCGAGCAGCATAAACACGGGCTATAAAGATCGCAGTTTTCTCCTTGGCATTCTTCGATAGCTCTGATCTGCAGTCAGCAGTATCGGGTGGGTGTATCGAGTTTACTGTCGAGTATATTATGCAGAAATTCGGGTTCAAAATTGTCAATAGTTTGATTTCCTTCCATTTGTGCCTATTTATATCTTCTTTGTGTGTTCCCTCTCATTTGCCCTACCTACAAAGGTTCGAAATGTGCTAATATCACACCACTACCTTAATTTTTTTACCTCTTATTTTTGAGTTCCGGTGAATCGTATTATTCAAATCTTTCGTACATAAAACTCCATGTTCGATTCTACACATTTGCACAATTTACATATCATTAGTCCATAGCTTATCTCACTCTTATTTTCTTGGTTTGCATATACTTCCTCCGTCTCCTTTCCCCATTAAATTTTTCTTCACATAAATTGGTCAATGTGGCAAGTAAAATAAGACACTTGACTCATAACCCGACCGGAATCGAATTCGAGTGACTTTAATTTAACCGATTGACCAATTTATCATATTTTGTAGTAAAATTAAGTTTTACTTGGTTCTGCTAATTTTTTGACAAAACTCGATATTGACTCGAAATTAAACCTGTACCTTATATATTGCCT

Coding sequence (CDS)

ATGGCGTACCCAATTAAGCCCAACAAGCCTGGGATGGAGGAAACCCAGGAGCCCACTCACAAGATCAGAATCACTCTTTCTTCTAAGGATGTCAAGAATCTCGAGAAAGTGTGTGCTGATCTTGTACGTGGTGCTAAGGACAAGCGTCTTCGCGTCAAGGGACCAGTAAGGATGCCCACCAAGGTTCTTAAGATTACAACAAGGAAATCTCCATGTGGTGAAGGAACAAACACTTGGGACAGATTCGAGTTGCGTGTCCACAAGAGAGTCATCGACCTCTTCAGCTCCCCTGATGTCGTCAAGCAGATCACTTCAATCACTATTGAACCCGGTGTTGAGGTTGAGGTTACAATTGCAGACTCTTAG

Protein sequence

MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo12817Spo12817gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo12817.1Spo12817.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12817.1.exon.1Spo12817.1.exon.1exon
Spo12817.1.exon.2Spo12817.1.exon.2exon
Spo12817.1.exon.3Spo12817.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12817.1.CDS.1Spo12817.1.CDS.1CDS
Spo12817.1.CDS.2Spo12817.1.CDS.2CDS
Spo12817.1.CDS.3Spo12817.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12817.1.utr3p.1Spo12817.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo12817.1 vs. NCBI nr
Match: gi|902217465|gb|KNA17727.1| (hypothetical protein SOVF_077440 [Spinacia oleracea])

HSP 1 Score: 242.3 bits (617), Expect = 4.500e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

		  

Query: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60
           MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT
Sbjct: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120
           KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120

Query: 121 S 122
           S
Sbjct: 121 S 121
[Close]
BLAST of Spo12817.1 vs. NCBI nr
Match: gi|731377209|ref|XP_010667811.1| (PREDICTED: 40S ribosomal protein S20-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 230.7 bits (587), Expect = 1.300e-57
Identity = 115/121 (95.04%), Postives = 119/121 (98.35%), Query Frame = 1 

		  

Query: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60
           MAYP+KP KPGMEE+QE THKIRITLSSK+VKNLEKVCADLVRGAKDK+LRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGMEESQETTHKIRITLSSKNVKNLEKVCADLVRGAKDKQLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120
           KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120

Query: 121 S 122
           S
Sbjct: 121 S 121
[Close]
BLAST of Spo12817.1 vs. NCBI nr
Match: gi|731322607|ref|XP_010671990.1| (PREDICTED: 40S ribosomal protein S20-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 230.3 bits (586), Expect = 1.800e-57
Identity = 115/121 (95.04%), Postives = 118/121 (97.52%), Query Frame = 1 

		  

Query: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60
           MAYP+KP KPGMEE+QE THKIRITLSSK+VKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGMEESQETTHKIRITLSSKNVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120
           KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120

Query: 121 S 122
           S
Sbjct: 121 S 121
[Close]
BLAST of Spo12817.1 vs. NCBI nr
Match: gi|902200956|gb|KNA13866.1| (hypothetical protein SOVF_112580 [Spinacia oleracea])

HSP 1 Score: 229.9 bits (585), Expect = 2.300e-57
Identity = 115/121 (95.04%), Postives = 119/121 (98.35%), Query Frame = 1 

		  

Query: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60
           MAYP+KP KPG+EE+QEPTHKIRITLSSKDVKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD
Sbjct: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120

Query: 121 S 122
           S
Sbjct: 121 S 121
[Close]
BLAST of Spo12817.1 vs. NCBI nr
Match: gi|702499562|ref|XP_010038001.1| (PREDICTED: 40S ribosomal protein S20-2 [Eucalyptus grandis])

HSP 1 Score: 219.9 bits (559), Expect = 2.400e-54
Identity = 110/121 (90.91%), Postives = 115/121 (95.04%), Query Frame = 1 

		  

Query: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60
           MAY +KP KPG+EE QE  HKIRITLSSK+VKNLEKVC+DLVRGAKDKRLRVKGPVRMPT
Sbjct: 1   MAYAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCSDLVRGAKDKRLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120
           KVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSP+VVKQITSITIEPGVEVEVTIAD
Sbjct: 61  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIAD 120

Query: 121 S 122
           S
Sbjct: 121 S 121
[Close]
BLAST of Spo12817.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFX4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077440 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.100e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

		  

Query: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60
           MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT
Sbjct: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120
           KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120

Query: 121 S 122
           S
Sbjct: 121 S 121
[Close]
BLAST of Spo12817.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5L7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_012430 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 9.300e-58
Identity = 115/121 (95.04%), Postives = 119/121 (98.35%), Query Frame = 1 

		  

Query: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60
           MAYP+KP KPGMEE+QE THKIRITLSSK+VKNLEKVCADLVRGAKDK+LRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGMEESQETTHKIRITLSSKNVKNLEKVCADLVRGAKDKQLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120
           KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD
Sbjct: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120

Query: 121 S 122
           S
Sbjct: 121 S 121
[Close]
BLAST of Spo12817.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2W8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_112580 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.600e-57
Identity = 115/121 (95.04%), Postives = 119/121 (98.35%), Query Frame = 1 

		  

Query: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60
           MAYP+KP KPG+EE+QEPTHKIRITLSSKDVKNLEKVCADLVRGAKDK LRVKGPVRMPT
Sbjct: 1   MAYPMKPTKPGVEESQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKHLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120
           KVLKITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD
Sbjct: 61  KVLKITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120

Query: 121 S 122
           S
Sbjct: 121 S 121
[Close]
BLAST of Spo12817.1 vs. UniProtKB/TrEMBL
Match: A0A059A8W4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K03281 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.600e-54
Identity = 110/121 (90.91%), Postives = 115/121 (95.04%), Query Frame = 1 

		  

Query: 1   MAYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 60
           MAY +KP KPG+EE QE  HKIRITLSSK+VKNLEKVC+DLVRGAKDKRLRVKGPVRMPT
Sbjct: 1   MAYAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCSDLVRGAKDKRLRVKGPVRMPT 60

Query: 61  KVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 120
           KVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSP+VVKQITSITIEPGVEVEVTIAD
Sbjct: 61  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPEVVKQITSITIEPGVEVEVTIAD 120

Query: 121 S 122
           S
Sbjct: 121 S 121
[Close]
BLAST of Spo12817.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MF16_GOSAR (40S ribosomal S20-2-like protein OS=Gossypium arboreum GN=F383_19287 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.700e-54
Identity = 112/122 (91.80%), Postives = 116/122 (95.08%), Query Frame = 1 

		  

Query: 1   MAYP-IKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  +KP KPG+EE+QE  HKIRITLSSK+VKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYATMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 DS 122
           DS
Sbjct: 121 DS 122
[Close]
BLAST of Spo12817.1 vs. ExPASy Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.400e-54
Identity = 109/122 (89.34%), Postives = 113/122 (92.62%), Query Frame = 1 

		  

Query: 1   MAY-PIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY P+KP K G+E   E  HKIRITLSSK+VKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120
           TKVLKITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 DS 122
           DS
Sbjct: 121 DS 122
[Close]
BLAST of Spo12817.1 vs. ExPASy Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=2 SV=2)

HSP 1 Score: 212.6 bits (540), Expect = 2.400e-54
Identity = 107/118 (90.68%), Postives = 111/118 (94.07%), Query Frame = 1 

		  

Query: 4   PIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 63
           P+KP K G+EE  E  HKIRITLSSK+VKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL
Sbjct: 7   PMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 66

Query: 64  KITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
           KITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Sbjct: 67  KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
[Close]
BLAST of Spo12817.1 vs. ExPASy Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 1.500e-48
Identity = 98/119 (82.35%), Postives = 105/119 (88.24%), Query Frame = 1 

		  

Query: 2   AYPIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPTK 61
           A P+K  K G E +QE  H+IRITLSSK VKNLEKVC DLV+GAKDK L+VKGPVRMPTK
Sbjct: 9   APPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTK 68

Query: 62  VLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 121
           VL ITTRKSPCGEGTNTWDRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVEVTI+D
Sbjct: 69  VLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
[Close]
BLAST of Spo12817.1 vs. ExPASy Swiss-Prot
Match: RS20_MACFA (40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.500e-40
Identity = 78/108 (72.22%), Postives = 98/108 (90.74%), Query Frame = 1 

		  

Query: 14  ETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLKITTRKSPCG 73
           E +   H+IRITL+S++VK+LEKVCADL+RGAK+K L+VKGPVRMPTK L+ITTRK+PCG
Sbjct: 12  EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 74  EGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
           EG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
[Close]
BLAST of Spo12817.1 vs. ExPASy Swiss-Prot
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.500e-40
Identity = 78/108 (72.22%), Postives = 98/108 (90.74%), Query Frame = 1 

		  

Query: 14  ETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLKITTRKSPCG 73
           E +   H+IRITL+S++VK+LEKVCADL+RGAK+K L+VKGPVRMPTK L+ITTRK+PCG
Sbjct: 12  EPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 74  EGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
           EG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
[Close]
BLAST of Spo12817.1 vs. TAIR (Arabidopsis)
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 212.6 bits (540), Expect = 1.300e-55
Identity = 107/118 (90.68%), Postives = 111/118 (94.07%), Query Frame = 1 

		  

Query: 4   PIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 63
           P+KP K G+EE  E  HKIRITLSSK+VKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL
Sbjct: 7   PMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 66

Query: 64  KITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
           KITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Sbjct: 67  KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
[Close]
BLAST of Spo12817.1 vs. TAIR (Arabidopsis)
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 212.6 bits (540), Expect = 1.300e-55
Identity = 107/118 (90.68%), Postives = 111/118 (94.07%), Query Frame = 1 

		  

Query: 4   PIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 63
           P+KP K G+EE  E  HKIRITLSSK+VKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL
Sbjct: 7   PMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 66

Query: 64  KITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122
           KITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Sbjct: 67  KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124
[Close]
BLAST of Spo12817.1 vs. TAIR (Arabidopsis)
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 212.6 bits (540), Expect = 1.300e-55
Identity = 109/122 (89.34%), Postives = 113/122 (92.62%), Query Frame = 1 

		  

Query: 1   MAY-PIKPNKPGMEETQEPTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY P+KP K G+E   E  HKIRITLSSK+VKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLKITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120
           TKVLKITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 DS 122
           DS
Sbjct: 121 DS 122
[Close]
BLAST of Spo12817.1 vs. TAIR (Arabidopsis)
Match: AT3G13120.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.100e-7
Identity = 33/102 (32.35%), Postives = 52/102 (50.98%), Query Frame = 1 

		  

Query: 18  PTHKIRITLSSKDVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLKITTRKSPCGEGTN 77
           P  KIRI L S  V  +E  C  ++  A++   +  GPV +PTK       KSP      
Sbjct: 91  PKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDA 150

Query: 78  TWDRFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 119
            +  FE+R H+R+ID L+ +   +  +  + +  GV+VEV +
Sbjct: 151 RF-HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191
The following BLAST results are available for this feature:
BLAST of Spo12817.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902217465|gb|KNA17727.1|4.5e-61100.hypothetical protein SOVF_0774... [more]
gi|731377209|ref|XP_010667811.1|1.3e-5795.0PREDICTED: 40S ribosomal prote... [more]
gi|731322607|ref|XP_010671990.1|1.8e-5795.0PREDICTED: 40S ribosomal prote... [more]
gi|902200956|gb|KNA13866.1|2.3e-5795.0hypothetical protein SOVF_1125... [more]
gi|702499562|ref|XP_010038001.1|2.4e-5490.9PREDICTED: 40S ribosomal prote... [more]
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BLAST of Spo12817.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RFX4_SPIOL3.1e-61100.Uncharacterized protein OS=Spi... [more]
A0A0J8B5L7_BETVU9.3e-5895.0Uncharacterized protein OS=Bet... [more]
A0A0K9R2W8_SPIOL1.6e-5795.0Uncharacterized protein OS=Spi... [more]
A0A059A8W4_EUCGR1.6e-5490.9Uncharacterized protein OS=Euc... [more]
A0A0B0MF16_GOSAR3.7e-5491.840S ribosomal S20-2-like prote... [more]
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BLAST of Spo12817.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS202_ARATH2.4e-5489.340S ribosomal protein S20-2 OS... [more]
RS201_ARATH2.4e-5490.640S ribosomal protein S20-1 OS... [more]
RS20_ORYSJ1.5e-4882.340S ribosomal protein S20 OS=O... [more]
RS20_MACFA1.5e-4072.240S ribosomal protein S20 OS=M... [more]
RS20_HUMAN1.5e-4072.240S ribosomal protein S20 OS=H... [more]
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BLAST of Spo12817.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT3G45030.11.3e-5590.6Ribosomal protein S10p/S20e fa... [more]
AT5G62300.11.3e-5590.6Ribosomal protein S10p/S20e fa... [more]
AT3G47370.21.3e-5589.3Ribosomal protein S10p/S20e fa... [more]
AT3G13120.15.1e-732.3Ribosomal protein S10p/S20e fa... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 21..34
score: 6.7E-15coord: 56..71
score: 6.7E-15coord: 78..92
score: 6.7
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 19..118
score: 19
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 5..120
score: 1.2
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMsTIGR01046TIGR01046coord: 20..118
score: 3.4
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 45..60
scor
IPR027486Ribosomal protein S10 domainGENE3D3.30.70.600coord: 20..120
score: 1.9
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 23..117
score: 4.4
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 23..117
score: 7.3
IPR027486Ribosomal protein S10 domainunknownSSF54999Ribosomal protein S10coord: 21..118
score: 2.22
NoneNo IPR availablePANTHERPTHR11700:SF10SUBFAMILY NOT NAMEDcoord: 5..120
score: 1.2

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome