Spo12877.1 (mRNA) | SpinachBase

Overview


Name	Spo12877.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Cleavage and polyadenylation specificity factor subunit 5
Location	chr3 : 2195329 .. 2200635 (+)
Sequence length	1639

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCTGCCCTGGCCACAACCATATTTTAGTTGCAGCCCCCTTTGAAAAAACGTTACATTTATTATGGGCATTTATTTATTTTATTTTGTCTCTTTTTAATTAATAACCCTTGTTAAATCTTGCAATATTCAGTACTTCCCCAGTTGATTTCCCCCCACATTCTTCCCCAAAATCCTTCCCCCCAGAAAAACCCTGATTTCTCTCTGCAAATCACAGAAGAAAGAAGGGCAACTGGGCGAAGAAGGTAAAGAAGCTCGAAGAAAGAAAGAAAGAAAGAAAGAAGCAATAGAAATGGTGAATCCAGCGCCAGTGGTGAACACTTACCCATTATCAAGCTACACTTTCGGCACCAAAGAGCCCAAGATGGAGAAAGATACTTCCGTTGCTGATCGCCTTGCTCGCATGAAACTCAAGTTTGTTTTTCTCTCTCCTCCTCAATTTTCGAGTTTAAATTGTTAAAACCCTCTATAAACCTTGACCCATTTGTATTTTTTGCTGTAATTTTGTTGGGGTTTCTTTAATTTCTTGTTTCTCGTTACTTATGTTGTGAATTTAACAATTTAGGGTTTTAGTTGTGTATTTTTTCGTACATTTCAAAAGAGTTGAATTGGGGATACATTGTGCAAATGATGAAACTAGTTAGGGGTTGGAATTCTGAATTTACTGGTAGAAATTAAGATTTCAGGTTTTGGCAATTGAGATGGATATGTTGGTAGTCTGAAAATTTTGCTGGTTTTCACTTTTCCTGTAGTTACATGAAAGAGGGCATGAGAACAAGTGTGGAGGCAATTCTACTGGTATGGTTCTGAACTCCTATTCGTTTCGAGTTCCTCTAATGACTGTTGTTTTTGAACTATTGAACTTGTCATAATGAAAGCTAGTTATGTTAGAAAACCGAAGGTTTGAGCCGTTTAACTAGTGCACTAGGCCAGAATTCCCCCCGTACGGTGCAAACATAAGACTAACCTCATGGTTGATGAATGATGATAATGATGAATGCATTTTTTTTTTTTGATTAAATGCTGGATGAGTTATCATTTTGGTGTTACACTAATTAACTATGAGGGTTTTGATTAGTTGTGTTCATTGTCTGAGAATTGGGTGATCTTGGTGGAAGCAATATTTTTGTGGTTATGAAGCTGCTAGAAATGTGAGATTAGCTATTGCAATATTGGTGAAAGATCCATTACATATTGCACACTGTGTATGTTTGCATTTTTCTTTGTTGTGGGGGGTGGGGGGGTATCTTCCAATCTTTACTCTATGTATTATTTTCTAATGGATTAGGTGGTGCTCTTTTTTTGTTGGCATGTTTATAAACTTCCCTAATATTGAAGATGCAGACCAATACATCGGATTCCAATTCTTTGAGGAAACTGATCAATTGGAAAAAAAAATTATGTTTGAATCATTTGCATATTCTTCTGAATTATACGTTCCTGCTGGATTAATTTGGAAAACCTGTAGGGAGACGCAAGAACAAACTATATTTTTTCGTTTCTTCTCGTTTCTACTAGGATTAATTTGCTTCATACTGTAGGTGCAAGAGCACAATCATCCACACATACTGCTTCTCCAAATTGGAAACACGTTCTGCAAACTTCCCGGAGGTCGGTTGAAGCCAGGCGAGAATGGTATCTTTCGATTCTTTCCCCTTCCTTAAAAAAGAAAGCATGTCAATTTGCATTGGTTTTACTTTCTTTCGGAAATTTGAGGTATGGTAATTTGACTTTTATCACAGAGATCGAGGGTTTGAAAAGGAAATTATCAAGCAAGCTTGCTGCTACCACACCTTCTCTACATCCAGAGTGGCAGGTAGTATTTTCATATTCTTATATGTCATAGATATCTTTTAATCAGTATATACATCAGAATAACTGATAAAAATGTTCTCATAAAGTTTTTTTTCCGTCTTAACTGCTCAATTTTCTCTTTTTGTTTCAGATAGGGGAGTGTGTAGGTCTTTGGTGGCGGCCAAACTTCGAAACTATTATGTATCCCTACTGTCCCCCTCATATAACCAAACCAAAGGTATTCTAGGGTTATTTTATTATGCTGATAACTGAGAGAGAATTACTTTCAGGCTAATATTTTTGTATCCATATTTGTGAAAATGCAGGAGTGCAAAAAACTTTATATTGTGCATCTATCTGAGAGAGAGTACTTTGCTGTGCCAAAAAACTTTAAACTGCTTGCTGTGCCTTTGTTTGAACTCTATGACAATGTCCAGGTATATGTCCAGAAATATTTCCTGTTTTGTTTTCTTAGATATATGCCTCTCTGCGATTTTGTTTTCTGCTGAAGCTTTAGTAACTATTGACCTTATTTAGAGATGAATGTACCTCATGAAAGTATTTCGAACTGTATTTATCAATTCTGATATTGTACTTTTTAAGTCAAATTATGCATGAAAGATTGTTTGGCCAAGAAGCTTACGGCTGAAACTTTTAGTAGCTACGAACCTTGTTTAGAGAGGATTGTAATTGTTTCAACATGTTTTCGTGGCTTCTTCTTTTATCTTAAAAGTCAAGTTATACCTGACAGACTGGCCTGATTGAGCCTGGTTCAAGTCATTTAAATGGTAAAAGAACCGGACATTCTGTTGACGAGTGCTAGAAGTTCATGCTACACTTCATCATTTCGTGTATTTTCTTTCTGTTGTGCTGGTGTAGCCATTTTATTATCAGTTTTCATCACAGCTTGTAAGTGTCTTTCTTTTTGTTTGCTAAACTTTTTTTGCGAGGATGTCTTGTCCTCCTTTCTCTACTTGTCCCCTCAAAAATATTGTTACGTGATACCAATCAAACAACCAAAATTTATCAAACCTAGGTCGGGGGGATCAGTGATGTTCGACTTGAACTTTAAAAGACTGGATTCCACAACAGTTGAACAATGACCAGGTCTCTGAGTTCGCAAATGCACATGCGTCATCCTATACTGAGGCCCATTCTTAAAAGCATAAGGCTAAGGCATTACCCGATGCCTTAGCAAGGCCTATGCCTCATCTGCAACAAGGCTGTGCCGCACAAATGTTTAGCCTATATTATATCTCACGTTGGTTCAGTGTTACCTAATTCTCTAATCACCTCCATGAACCGCGAACCCAAAAAGCGAATTATAACGTGAAAATGGTACAATTTTGGTCTAATTTAGCAAATCAGGTAGTGAATTGCGTACCCGTACTCAATCTCATACTAGCAAATCAGGTAACTGTGGTTTGGTTGATTCTTTCGTTATACACCGTACCAGAATTTGGAGATAAGTCTTTCCTAGTCTCAAGGAGGCTCCAGGTATCTCCCATAGCTCTTAGAAGCCTTCCCTATTTCTCTTGGACCATAGATAATAGAAAACTCTATGCATTGAAATCCATTTAGATGATGATGCATGTCCGTATGACCTTAAGTTTAATAGGAACTCACGAAAGAGTTGGTGAAATCACAGTTCTTTAAGGCTATAGCATTTGGTTGTGAGACACATCTAATTAGGGGAGATTTGGGAGAATCTCAGTGGAAATTGAAGGGAATTACATGTAAATTCGTCAATTCCTCAAGGGTTGCTTTATTTCCTTATCAAACCTCCTCACTCTTTCGTGCTTAAGTTTATTAAATATATGTCTTCTTGAGTTCTTGCTATGCAAAATCCCCATATCAAATACAAAAGCCACCTATATATATTGAAAGGGTTGTCTGACCTGTCTCACTTGGCAATCTTCCCACGTGGCGCATTTAAGTCTTTAATCTGTTAACAGTGATACTTCATAATGTATTTTCTTGTGAAGTTGATCACGACAAAAGTAAAGAAATCATGTGTATTCAATCTTCTGAGAAGATGTCACAGAAGTCACTCTGTCAAAATTTTATAGTGTATTTTTAGTTAAGCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCATTAAAAAAAAAAATTGTGTATAATTGTATAATTACATAGTATATTGATATTGCTAAAAAAAAGTTCTATCGTTATAAGTTGCCCTCAATATGATCATAATTTAGGTGTACGTCTTTGACTCTTTGCTGCTAGCCTTCTTACTCCTTTATGAAAAGAACTATGTAGTTCTTAAGAGTTGATCACTTAGCAAAATTGCTCCTGTTCATTGGTGTTGCGCCACCGAGTTTGCTATGCAGTGCCTATGTCTTCTATTTGTTGGCAGAGATATCGCTGTTGTACTACCTCCATATTTTTCAGTTTAGTTAGTTTCAGTAGTTTCAATCTATTAAAAGTCAGGTAAAAAGAACAGGACTGCAGTCTGAATGTTTATTATCATGAATTACATGCATCAAACCTGTATAAGTGTATAACAGAAATTGAAAAATGTTCTGATATGAGTTCTTTGCTTGATGACAGAGATATGGACCCGTCTTATCCTCCATTCCACAGCAGCTGTCCAGATTCCAGTTTAAAATGATCACTCCTTGAGATTAACCAGGTTGCAACGTTGCATGGAGTACGTAGTTGCTTCCTACCGTTGTTCGTGGAAGAAAATACAAGTTTACTGGGAAAGACTAAAAGGCCCTTTATTCACATTGAAATACTGGAAGTTACTCTCATAACCTTCACTTAGTCCTACTAATTGGGTATTAATTAGATTTTTCGGATGATTTTTTATGAGATCATTCTCTGGTGTCAGGTATTGGTTTTTAATTCCCTGACAAATTCTTGAACTGTTGTTAGACTAGTATACAACAAAGGCAGGGTAGTAAACTAGTAATAGTATGTTTTGTAGAAATTGTGGTGACTTTTATGGTAGCTGTTTTTGGCAGATTGAATTGTTCTGCTTTTGTAACGAAGGAAAGGGGAAGTTTGTGTTGACAGATCAAATGATTCTGTTGTTTTTCTATTACTGGGAGAGTTGTTTGGTTGCAAAAGATTGTGAAAATGTAGGGATTTCAAATTCCATGAAATTGGAACTTCCCTCATAACATGGGAATTTATTTACCTAGTTCCTCTAGGTAACTCAAAATTCCCATGATTTGCAAAAAAAAATCACCATGTCAAACAAACAAACAAGTTTAAGGCAATTTCTAGGAACTTGATTTGGGATTTTGATTCCCATGAAAGACAAATTCTTATTGGAATTTTGCTTGTAAAATCGCCAACTCAATTGAATGTTTTGCTAGTAAAATTGCTGAATCAGTTGGCGTTTTGTTGATGAACCAGG

mRNA sequence

ACCCTGCCCTGGCCACAACCATATTTTAGTTGCAGCCCCCTTTGAAAAAACGTTACATTTATTATGGGCATTTATTTATTTTATTTTGTCTCTTTTTAATTAATAACCCTTGTTAAATCTTGCAATATTCAGTACTTCCCCAGTTGATTTCCCCCCACATTCTTCCCCAAAATCCTTCCCCCCAGAAAAACCCTGATTTCTCTCTGCAAATCACAGAAGAAAGAAGGGCAACTGGGCGAAGAAGGTAAAGAAGCTCGAAGAAAGAAAGAAAGAAAGAAAGAAGCAATAGAAATGGTGAATCCAGCGCCAGTGGTGAACACTTACCCATTATCAAGCTACACTTTCGGCACCAAAGAGCCCAAGATGGAGAAAGATACTTCCGTTGCTGATCGCCTTGCTCGCATGAAACTCAATTACATGAAAGAGGGCATGAGAACAAGTGTGGAGGCAATTCTACTGGTGCAAGAGCACAATCATCCACACATACTGCTTCTCCAAATTGGAAACACGTTCTGCAAACTTCCCGGAGGTCGGTTGAAGCCAGGCGAGAATGAGATCGAGGGTTTGAAAAGGAAATTATCAAGCAAGCTTGCTGCTACCACACCTTCTCTACATCCAGAGTGGCAGATAGGGGAGTGTGTAGGTCTTTGGTGGCGGCCAAACTTCGAAACTATTATGTATCCCTACTGTCCCCCTCATATAACCAAACCAAAGGAGTGCAAAAAACTTTATATTGTGCATCTATCTGAGAGAGAGTACTTTGCTGTGCCAAAAAACTTTAAACTGCTTGCTGTGCCTTTGTTTGAACTCTATGACAATGTCCAGAGATATGGACCCGTCTTATCCTCCATTCCACAGCAGCTGTCCAGATTCCAGTTTAAAATGATCACTCCTTGAGATTAACCAGGTTGCAACGTTGCATGGAGTACGTAGTTGCTTCCTACCGTTGTTCGTGGAAGAAAATACAAGTTTACTGGGAAAGACTAAAAGGCCCTTTATTCACATTGAAATACTGGAAGTTACTCTCATAACCTTCACTTAGTCCTACTAATTGGGTATTAATTAGATTTTTCGGATGATTTTTTATGAGATCATTCTCTGGTGTCAGGTATTGGTTTTTAATTCCCTGACAAATTCTTGAACTGTTGTTAGACTAGTATACAACAAAGGCAGGGTAGTAAACTAGTAATAGTATGTTTTGTAGAAATTGTGGTGACTTTTATGGTAGCTGTTTTTGGCAGATTGAATTGTTCTGCTTTTGTAACGAAGGAAAGGGGAAGTTTGTGTTGACAGATCAAATGATTCTGTTGTTTTTCTATTACTGGGAGAGTTGTTTGGTTGCAAAAGATTGTGAAAATGTAGGGATTTCAAATTCCATGAAATTGGAACTTCCCTCATAACATGGGAATTTATTTACCTAGTTCCTCTAGGTAACTCAAAATTCCCATGATTTGCAAAAAAAAATCACCATGTCAAACAAACAAACAAGTTTAAGGCAATTTCTAGGAACTTGATTTGGGATTTTGATTCCCATGAAAGACAAATTCTTATTGGAATTTTGCTTGTAAAATCGCCAACTCAATTGAATGTTTTGCTAGTAAAATTGCTGAATCAGTTGGCGTTTTGTTGATGAACCAGG

Coding sequence (CDS)

ATGGTGAATCCAGCGCCAGTGGTGAACACTTACCCATTATCAAGCTACACTTTCGGCACCAAAGAGCCCAAGATGGAGAAAGATACTTCCGTTGCTGATCGCCTTGCTCGCATGAAACTCAATTACATGAAAGAGGGCATGAGAACAAGTGTGGAGGCAATTCTACTGGTGCAAGAGCACAATCATCCACACATACTGCTTCTCCAAATTGGAAACACGTTCTGCAAACTTCCCGGAGGTCGGTTGAAGCCAGGCGAGAATGAGATCGAGGGTTTGAAAAGGAAATTATCAAGCAAGCTTGCTGCTACCACACCTTCTCTACATCCAGAGTGGCAGATAGGGGAGTGTGTAGGTCTTTGGTGGCGGCCAAACTTCGAAACTATTATGTATCCCTACTGTCCCCCTCATATAACCAAACCAAAGGAGTGCAAAAAACTTTATATTGTGCATCTATCTGAGAGAGAGTACTTTGCTGTGCCAAAAAACTTTAAACTGCTTGCTGTGCCTTTGTTTGAACTCTATGACAATGTCCAGAGATATGGACCCGTCTTATCCTCCATTCCACAGCAGCTGTCCAGATTCCAGTTTAAAATGATCACTCCTTGA

Protein sequence

MVNPAPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPNFETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVLSSIPQQLSRFQFKMITP

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo12877	Spo12877	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo12877.1	Spo12877.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12877.1.exon.1	Spo12877.1.exon.1	exon
Spo12877.1.exon.2	Spo12877.1.exon.2	exon
Spo12877.1.exon.3	Spo12877.1.exon.3	exon
Spo12877.1.exon.4	Spo12877.1.exon.4	exon
Spo12877.1.exon.5	Spo12877.1.exon.5	exon
Spo12877.1.exon.6	Spo12877.1.exon.6	exon
Spo12877.1.exon.7	Spo12877.1.exon.7	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12877.1.utr5p.1	Spo12877.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12877.1.CDS.1	Spo12877.1.CDS.1	CDS
Spo12877.1.CDS.2	Spo12877.1.CDS.2	CDS
Spo12877.1.CDS.3	Spo12877.1.CDS.3	CDS
Spo12877.1.CDS.4	Spo12877.1.CDS.4	CDS
Spo12877.1.CDS.5	Spo12877.1.CDS.5	CDS
Spo12877.1.CDS.6	Spo12877.1.CDS.6	CDS
Spo12877.1.CDS.7	Spo12877.1.CDS.7	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12877.1.utr3p.1	Spo12877.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo12877.1 vs. NCBI nr
Match: gi|902235444|gb|KNA23914.1| (hypothetical protein SOVF_019580 [Spinacia oleracea])

HSP 1 Score: 422.2 bits (1084), Expect = 5.200e-115
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1


		  
Query: 1   MVNPAPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEH 60
           MVNPAPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEH
Sbjct: 1   MVNPAPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEH 60

Query: 61  NHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLW 120
           NHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLW
Sbjct: 61  NHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLW 120

Query: 121 WRPNFETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRY 180
           WRPNFETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRY 180

Query: 181 GPVLSSIPQQLSRFQFKMITP 202
           GPVLSSIPQQLSRFQFKMITP
Sbjct: 181 GPVLSSIPQQLSRFQFKMITP 201

[Close]

BLAST of Spo12877.1 vs. NCBI nr
Match: gi|747074807|ref|XP_011084411.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2-like [Sesamum indicum])

HSP 1 Score: 387.9 bits (995), Expect = 1.100e-104
Identity = 181/197 (91.88%), Postives = 190/197 (96.45%), Query Frame = 1


		  
Query: 5   APVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPH 64
           +PVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEHNHPH
Sbjct: 4   SPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHNHPH 63

Query: 65  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPN 124
           ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAA +PSL P+WQIGECV +WWRPN
Sbjct: 64  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSPSLQPDWQIGECVAIWWRPN 123

Query: 125 FETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVL 184
           FETIMYPYCPPHITKPKECKKL++VHLSEREYFAVPKN KLLAVPLFELYDNVQRYGPV+
Sbjct: 124 FETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVI 183

Query: 185 SSIPQQLSRFQFKMITP 202
           S+IPQQLSRFQF MI P
Sbjct: 184 STIPQQLSRFQFNMIHP 200

[Close]

BLAST of Spo12877.1 vs. NCBI nr
Match: gi|567858442|ref|XP_006421904.1| (hypothetical protein CICLE_v10005929mg [Citrus clementina])

HSP 1 Score: 384.8 bits (987), Expect = 9.200e-104
Identity = 179/196 (91.33%), Postives = 190/196 (96.94%), Query Frame = 1


		  
Query: 5   APVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPH 64
           +PVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMK+NYMKEGMRTSVEAILLVQEHNHPH
Sbjct: 4   SPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPH 63

Query: 65  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPN 124
           ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL A +P+L P+WQIGECV +WWRPN
Sbjct: 64  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPN 123

Query: 125 FETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVL 184
           FETIMYPYCPPHITKPKECKKL++VHLSEREYFAVPKN KLLAVPLFELYDNVQRYGPV+
Sbjct: 124 FETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVI 183

Query: 185 SSIPQQLSRFQFKMIT 201
           S+IPQQLSRFQF MIT
Sbjct: 184 STIPQQLSRFQFNMIT 199

[Close]

BLAST of Spo12877.1 vs. NCBI nr
Match: gi|225454123|ref|XP_002269748.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Vitis vinifera])

HSP 1 Score: 384.4 bits (986), Expect = 1.200e-103
Identity = 180/196 (91.84%), Postives = 190/196 (96.94%), Query Frame = 1


		  
Query: 5   APVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPH 64
           +PVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMK+NYMKEGMRTSVEAILLVQEHNHPH
Sbjct: 4   SPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPH 63

Query: 65  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPN 124
           ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAA + +L P+WQIGECV +WWRPN
Sbjct: 64  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSLALQPDWQIGECVAIWWRPN 123

Query: 125 FETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVL 184
           FETIMYPYCPPHITKPKECKKL+IVHLSEREYFAVPKN KLLAVPLFELYDNVQRYGPV+
Sbjct: 124 FETIMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVI 183

Query: 185 SSIPQQLSRFQFKMIT 201
           S+IPQQLSRFQF M+T
Sbjct: 184 STIPQQLSRFQFNMMT 199

[Close]

BLAST of Spo12877.1 vs. NCBI nr
Match: gi|449432171|ref|XP_004133873.1| (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus])

HSP 1 Score: 384.0 bits (985), Expect = 1.600e-103
Identity = 178/196 (90.82%), Postives = 189/196 (96.43%), Query Frame = 1


		  
Query: 5   APVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPH 64
           +PVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMK+NYMKEGMRTSVEAILLVQEH HPH
Sbjct: 4   SPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPH 63

Query: 65  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPN 124
           ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL A +PSL P+WQIGECV +WWRPN
Sbjct: 64  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPN 123

Query: 125 FETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVL 184
           FET+MYPYCPPHITKPKECKKL+IVHLSEREYFAVPKN KLLAVPLFELYDNVQRYGPV+
Sbjct: 124 FETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVI 183

Query: 185 SSIPQQLSRFQFKMIT 201
           S+IPQQLSRFQF MIT
Sbjct: 184 STIPQQLSRFQFNMIT 199

[Close]

BLAST of Spo12877.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYC5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_019580 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 3.600e-115
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1


		  
Query: 1   MVNPAPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEH 60
           MVNPAPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEH
Sbjct: 1   MVNPAPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEH 60

Query: 61  NHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLW 120
           NHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLW
Sbjct: 61  NHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLW 120

Query: 121 WRPNFETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRY 180
           WRPNFETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRY
Sbjct: 121 WRPNFETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRY 180

Query: 181 GPVLSSIPQQLSRFQFKMITP 202
           GPVLSSIPQQLSRFQFKMITP
Sbjct: 181 GPVLSSIPQQLSRFQFKMITP 201

[Close]

BLAST of Spo12877.1 vs. UniProtKB/TrEMBL
Match: V4U7E9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005929mg PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 6.400e-104
Identity = 179/196 (91.33%), Postives = 190/196 (96.94%), Query Frame = 1


		  
Query: 5   APVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPH 64
           +PVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMK+NYMKEGMRTSVEAILLVQEHNHPH
Sbjct: 4   SPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPH 63

Query: 65  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPN 124
           ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL A +P+L P+WQIGECV +WWRPN
Sbjct: 64  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPN 123

Query: 125 FETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVL 184
           FETIMYPYCPPHITKPKECKKL++VHLSEREYFAVPKN KLLAVPLFELYDNVQRYGPV+
Sbjct: 124 FETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVI 183

Query: 185 SSIPQQLSRFQFKMIT 201
           S+IPQQLSRFQF MIT
Sbjct: 184 STIPQQLSRFQFNMIT 199

[Close]

BLAST of Spo12877.1 vs. UniProtKB/TrEMBL
Match: F6I6I8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g03350 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 8.400e-104
Identity = 180/196 (91.84%), Postives = 190/196 (96.94%), Query Frame = 1


		  
Query: 5   APVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPH 64
           +PVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMK+NYMKEGMRTSVEAILLVQEHNHPH
Sbjct: 39  SPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPH 98

Query: 65  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPN 124
           ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAA + +L P+WQIGECV +WWRPN
Sbjct: 99  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSLALQPDWQIGECVAIWWRPN 158

Query: 125 FETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVL 184
           FETIMYPYCPPHITKPKECKKL+IVHLSEREYFAVPKN KLLAVPLFELYDNVQRYGPV+
Sbjct: 159 FETIMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVI 218

Query: 185 SSIPQQLSRFQFKMIT 201
           S+IPQQLSRFQF M+T
Sbjct: 219 STIPQQLSRFQFNMMT 234

[Close]

BLAST of Spo12877.1 vs. UniProtKB/TrEMBL
Match: I3SXB4_MEDTR (Cleavage and polyadenylation specificity factor 5 OS=Medicago truncatula GN=MTR_1g100673 PE=2 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.100e-103
Identity = 179/197 (90.86%), Postives = 189/197 (95.94%), Query Frame = 1


		  
Query: 4   PAPVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHP 63
           P+ VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEHNHP
Sbjct: 3   PSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHNHP 62

Query: 64  HILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRP 123
           HILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL A +P L P+WQIGECV +WWRP
Sbjct: 63  HILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPGLVPDWQIGECVAIWWRP 122

Query: 124 NFETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPV 183
           NFETIMYPYCPPHITKPKECKKL++VHLSEREYFAVPKN KLLAVPLFELYDNVQRYGPV
Sbjct: 123 NFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPV 182

Query: 184 LSSIPQQLSRFQFKMIT 201
           +S+IPQQLSRFQFKMIT
Sbjct: 183 ISTIPQQLSRFQFKMIT 199

[Close]

BLAST of Spo12877.1 vs. UniProtKB/TrEMBL
Match: A0A0A0L8Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122550 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.100e-103
Identity = 178/196 (90.82%), Postives = 189/196 (96.43%), Query Frame = 1


		  
Query: 5   APVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPH 64
           +PVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMK+NYMKEGMRTSVEAILLVQEH HPH
Sbjct: 4   SPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPH 63

Query: 65  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPN 124
           ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL A +PSL P+WQIGECV +WWRPN
Sbjct: 64  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPSLQPDWQIGECVAIWWRPN 123

Query: 125 FETIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVL 184
           FET+MYPYCPPHITKPKECKKL+IVHLSEREYFAVPKN KLLAVPLFELYDNVQRYGPV+
Sbjct: 124 FETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVI 183

Query: 185 SSIPQQLSRFQFKMIT 201
           S+IPQQLSRFQF MIT
Sbjct: 184 STIPQQLSRFQFNMIT 199

[Close]

BLAST of Spo12877.1 vs. ExPASy Swiss-Prot
Match: CFIS2_ARATH (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 1.200e-98
Identity = 165/194 (85.05%), Postives = 181/194 (93.30%), Query Frame = 1


		  
Query: 7   VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPHIL 66
           VVNTYPLS+Y+FGTKEPK+EKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEHNHPHIL
Sbjct: 6   VVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHIL 65

Query: 67  LLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPNFE 126
           LLQIGNTFCKLPGGRLKPGENE +GLKRKL+SKL   + +L P+W +GECV  WWRPNFE
Sbjct: 66  LLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFE 125

Query: 127 TIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVLSS 186
           T+MYPYCPPHITKPKECK+LYIVHLSE+EYFAVPKN KLLAVPLFELYDNVQRYGPV+S+
Sbjct: 126 TMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVIST 185

Query: 187 IPQQLSRFQFKMIT 201
           IPQQLSRF F MI+
Sbjct: 186 IPQQLSRFHFNMIS 199

[Close]

BLAST of Spo12877.1 vs. ExPASy Swiss-Prot
Match: CPSF5_DANRE (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.200e-64
Identity = 113/189 (59.79%), Postives = 141/189 (74.60%), Query Frame = 1


		  
Query: 8   VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPHILL 67
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 38  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLL 97

Query: 68  LQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPNFET 127
           LQ+G TF KLPGG L PGE+E+EGLKR L +++      +  +W I +C+G WWRPNFE 
Sbjct: 98  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVKQDWVIDDCIGNWWRPNFEP 157

Query: 128 IMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVLSSI 187
             YPY P HITKPKE KKL++V L E+  FAVPKN+KL+A PLFELYDN   YGP++SS+
Sbjct: 158 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 217

Query: 188 PQQLSRFQF 197
           PQ LSRF F
Sbjct: 218 PQLLSRFNF 225

[Close]

BLAST of Spo12877.1 vs. ExPASy Swiss-Prot
Match: CPSF5_XENLA (Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.200e-64
Identity = 113/189 (59.79%), Postives = 141/189 (74.60%), Query Frame = 1


		  
Query: 8   VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPHILL 67
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 68  LQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPNFET 127
           LQ+G TF KLPGG L PGE+E+EGLKR L +++      +  +W I +C+G WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVQQDWVIDDCIGNWWRPNFEP 156

Query: 128 IMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVLSSI 187
             YPY P HITKPKE KKL++V L E+  FAVPKN+KL+A PLFELYDN   YGP++SS+
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 188 PQQLSRFQF 197
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Spo12877.1 vs. ExPASy Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.100e-64
Identity = 113/189 (59.79%), Postives = 141/189 (74.60%), Query Frame = 1


		  
Query: 8   VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPHILL 67
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 68  LQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPNFET 127
           LQ+G TF KLPGG L PGE+E+EGLKR L +++      +  +W I +C+G WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 156

Query: 128 IMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVLSSI 187
             YPY P HITKPKE KKL++V L E+  FAVPKN+KL+A PLFELYDN   YGP++SS+
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 188 PQQLSRFQF 197
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Spo12877.1 vs. ExPASy Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.100e-64
Identity = 113/189 (59.79%), Postives = 141/189 (74.60%), Query Frame = 1


		  
Query: 8   VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPHILL 67
           +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 68  LQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPNFET 127
           LQ+G TF KLPGG L PGE+E+EGLKR L +++      +  +W I +C+G WWRPNFE 
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKR-LMTEILGRQDGVLQDWVIDDCIGNWWRPNFEP 156

Query: 128 IMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVLSSI 187
             YPY P HITKPKE KKL++V L E+  FAVPKN+KL+A PLFELYDN   YGP++SS+
Sbjct: 157 PQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSL 216

Query: 188 PQQLSRFQF 197
           PQ LSRF F
Sbjct: 217 PQLLSRFNF 224

[Close]

BLAST of Spo12877.1 vs. TAIR (Arabidopsis)
Match: AT4G25550.1 (Cleavage/polyadenylation specificity factor, 25kDa subunit)

HSP 1 Score: 360.5 bits (924), Expect = 6.600e-100
Identity = 165/194 (85.05%), Postives = 181/194 (93.30%), Query Frame = 1


		  
Query: 7   VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPHIL 66
           VVNTYPLS+Y+FGTKEPK+EKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEHNHPHIL
Sbjct: 6   VVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHIL 65

Query: 67  LLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPNFE 126
           LLQIGNTFCKLPGGRLKPGENE +GLKRKL+SKL   + +L P+W +GECV  WWRPNFE
Sbjct: 66  LLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFE 125

Query: 127 TIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVLSS 186
           T+MYPYCPPHITKPKECK+LYIVHLSE+EYFAVPKN KLLAVPLFELYDNVQRYGPV+S+
Sbjct: 126 TMMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVIST 185

Query: 187 IPQQLSRFQFKMIT 201
           IPQQLSRF F MI+
Sbjct: 186 IPQQLSRFHFNMIS 199

[Close]

BLAST of Spo12877.1 vs. TAIR (Arabidopsis)
Match: AT4G29820.1 (homolog of CFIM-25)

HSP 1 Score: 240.7 bits (613), Expect = 7.600e-64
Identity = 109/193 (56.48%), Postives = 146/193 (75.65%), Query Frame = 1


		  
Query: 7   VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPHIL 66
           +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LLV+   HPH+L
Sbjct: 28  MVDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVL 87

Query: 67  LLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAATTPSLHPEWQIGECVGLWWRPNFE 126
           LLQ  N+  KLPGGRL+PGE++IEGLKRKL+SKL+         +++GEC+G+WWRPNFE
Sbjct: 88  LLQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFE 147

Query: 127 TIMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNFKLLAVPLFELYDNVQRYGPVLSS 186
           T+MYP+ PP+I  PKEC KL++V L   + F VPKNFKLLAVPL +L++N + YGP++S 
Sbjct: 148 TLMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQ 207

Query: 187 IPQQLSRFQFKMI 200
           IP+ LS+F F M+
Sbjct: 208 IPKLLSKFSFNMM 220

The following BLAST results are available for this feature:

BLAST of Spo12877.1 vs. NCBI nr
BLAST of Spo12877.1 vs. UniProtKB/TrEMBL
BLAST of Spo12877.1 vs. ExPASy Swiss-Prot
BLAST of Spo12877.1 vs. TAIR (Arabidopsis)

BLAST of Spo12877.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902235444\|gb\|KNA23914.1\|	5.2e-115	100.	hypothetical protein SOVF_0195...	[more]
gi\|747074807\|ref\|XP_011084411.1\|	1.1e-104	91.8	PREDICTED: pre-mRNA cleavage f...	[more]
gi\|567858442\|ref\|XP_006421904.1\|	9.2e-104	91.3	hypothetical protein CICLE_v10...	[more]
gi\|225454123\|ref\|XP_002269748.1\|	1.2e-103	91.8	PREDICTED: pre-mRNA cleavage f...	[more]
gi\|449432171\|ref\|XP_004133873.1\|	1.6e-103	90.8	PREDICTED: pre-mRNA cleavage f...	[more]

BLAST of Spo12877.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RYC5_SPIOL	3.6e-115	100.	Uncharacterized protein OS=Spi...	[more]
V4U7E9_9ROSI	6.4e-104	91.3	Uncharacterized protein OS=Cit...	[more]
F6I6I8_VITVI	8.4e-104	91.8	Putative uncharacterized prote...	[more]
I3SXB4_MEDTR	1.1e-103	90.8	Cleavage and polyadenylation s...	[more]
A0A0A0L8Y2_CUCSA	1.1e-103	90.8	Uncharacterized protein OS=Cuc...	[more]

BLAST of Spo12877.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
CFIS2_ARATH	1.2e-98	85.0	Pre-mRNA cleavage factor Im 25...	[more]
CPSF5_DANRE	3.2e-64	59.7	Cleavage and polyadenylation s...	[more]
CPSF5_XENLA	3.2e-64	59.7	Cleavage and polyadenylation s...	[more]
CPSF5_BOVIN	7.1e-64	59.7	Cleavage and polyadenylation s...	[more]
CPSF5_HUMAN	7.1e-64	59.7	Cleavage and polyadenylation s...	[more]

BLAST of Spo12877.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT4G25550.1	6.6e-100	85.0	Cleavage/polyadenylation speci...	[more]
AT4G29820.1	7.6e-64	56.4	homolog of CFIM-25	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015797	NUDIX hydrolase domain-like	GENE3D	3.90.79.10		coord: 44..103 score: 4.
IPR015797	NUDIX hydrolase domain-like	unknown	SSF55811	Nudix	coord: 51..120 score: 7.4
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PIR	PIRSF017888	CPSF-25	coord: 1..201 score: 1.3
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PANTHER	PTHR13047	PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT	coord: 6..200 score: 6.6E
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PFAM	PF13869	NUDIX_2	coord: 7..194 score: 4.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
cellular_component	GO:0005849	mRNA cleavage factor complex
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003729	mRNA binding