Spo01961.1 (mRNA) | SpinachBase

Overview


Name	Spo01961.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_01438 : 154973 .. 157838 (-)
Sequence length	666

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTACAGTTTTGCTATCATATTACAGCTAATCAAGTAGCCAATTATCTTGACCGGTTACATGTAAGCCTCTCACGTGATTCATATGCATTGCCTTGTGTAGCTAAGTTTCTAAAATTCTGCATAAGCGTATAATTCTCCCAGGTTTTGTTTTATGCAGGTTTATTTTCAGTTGTTTTTGGACACGCAATATTCGGTACGATATACTTCGTATACTACAAAGTCTGCTTATGAGAAGCTGGAAAATTGGTGACAGTACCCAGGTTTTACAAAGGCAAGGTTGTGTTCTAATAACTATTTTCCTCATTTGTTTGATGCTCTGTCTTACTAGGAGTATGTCAAAAGAAATGACAACAATAGGCAGTATTAGCATCTCAACATTGTATTGGAAAGTTTTATTGTATATGATATTAGCAATTCAGATATATTATCCAGAAAGAATAACTCTGGGACTGTGAACATAAGCAATATGTATGGCTAAATATTACTTGTAAAGGCTTAAAACTCATCATTGAATATTATAGCTTTATCTCATTTTTTTTACTAGCGCTAGCTTTTATCCTAACTTTACTAATTATACATTCTTTTGTTGAAGTGCAGATATTTTCTCCAAACCGGTACACTCAAGAGGAGATCGACGATGTTCGAGAAAAATGGAGCAGCTATTTTTATTAATAGTTGGATTAGATAGCGTGCAAGTAAAAGGACATATATCTATGTAAGTTTTAGATTAGAATAAANGTAAAAGGACATATATCTATGTAAGTTTTAGATTAGAATAAACTTCTCTGTTCTCTTTCTTAAACTGGTTTTACTACTGTCAAATTCCTGTCATTTTACTGCTGTTTTTATGTTGGCTATAATCTGAATGTTAGCTGTGTTGTCCGGCCTGTGGGATAACTGTTGAAACACTGCACCAAAAGGGAAGGGGGAGGTGGGATTAACTCTTTTTTTTTGGCAATTAATAATAGGATATATTAAAAACCAAAGCCTTAAGAACACTCAAGGGAAAGAACAGTGAGCACAGACCACAAAACACCAGCCCCAAAAAGAGCACAAACTGAGCAACAGCTAAGACTAGCTACGACAGTAGCTACTAAGCATACTCTACTCTACTCCTGAGATCATCAGAACATCTAGAGATCCCTATACTTCTCAGAACTCTCTGCCAGACAGCAGCAGAAAACAAACAGCCAAAGAACAAATGCTCAACAGACTCCTTCTCAGAATTACACAGAACACAAACATCACTACAGGATTAACTCTTTTGCACAGATTTTACAATTCCTTACAAAAGTAGAAGGAAACTTTCAGGAAGAAGATATATTAATAGGCTTCATCAAAACTAATCTGAGACACTTTGGATTAGTGAAGGCATTAGCTTCAATGCANTTCCCCCCCCCCCCCCCCCCCCCCCCCAAATAACAAGGCTTTATAGACCTTTCTACTTTTGAGCATTGGCCATTCTAGCTATGAGGATTGATCTGAGTACCAAAAAAAGGAGAGTAAAAAACAAACATAGTGCGGCAGTGCCCCTTATGAAAACCATAGGTAAAAAACAGAAATATCAGGAGATTTCAGAGTTTGAAGAGGCCCAAGAGTGTGCCTGATAGCATTGCGAAACAAGCGCAGACTTTGATTTATATTAAATGTCTTCATGAACAGAAAATAGTAGCTTTGTGCCTCAGGTTTGGTGGTTGTTTGATTATATACTGCCTACATTCTGTTTGAACTGTCAGGCTTGAGTTTGTAATCTTAAACTGTTCTACTCCCTTTTTTCTTGGTTAAGAGACACAATTGAGATGTTAGCTTGTTGATATGTGCTGTATTGGATATGTTGTTATTCAAAACTGAAAGTATATGGTCTTTCATTTCAGCAACCTAATAGATTTTCGCAAAACATAACGTCTATTTTGCATATTTCAGTAGTCGCAGTCTTAACTAATTACTATGTTCTAATTGTCCATTATACATTATGTCGTTTGGTTTATACTGGGTTCTCTTTAATTCTGGGGTCATTTGGTTTTAAGAATTGAAAGTATTACAGGATAAATCGGTGATCACATGCATATTTAACAATGTTGTAACTGAGCGTATCATAGTTGAGGAAACTGTATTAGTGGTGTAGATGGAGCTGTCCTTTAATTATGCATGTATCTGATGTATCTGTTCCGTTTCAAGAGTCTTCAAATGAATGATATATGCCACGCAAGTGATTAACCGTGTTTCAAGAGTCTACAACTAATAATACTTGGAACAATTGTTCTCATGTTTAGGAGTTATCGGACTTGGCAAGCCAACAACAAAGGATCTCGAAAGTCTCTAAGATGGAAAAAATTTATAGTAAGATTTAATTAGTTTGATTATTATTTTTATCGTAGATTCATATATATGTTATTCTTTAATTTAATGTGTATTATATTTGTATCTTAGTGTTCTCGCGAACCGGAAATGCTTGAATGTTGCTATTACGTCATGAAGTACATGTATCAAATAGTTTTACTTGGATTACAAAGTATTAGTAATGTGGAAGAGGTACGTGTACATGTATGTTTGTTATTATTTTATCTCAGTTGTTACTATATATGCGCTAGCTTTTATCTAAGCTTTACTAATTAATTCATTATTTTGTTGAAGTACAGATATTTTCTCCAAACCCATACACTCAAGAGGAGATCGATGATGTTCGAGAAAAATGGAGTAGATATTTTATTAGTAGTTTGTAGTCATTTTCTAGTTTTCACAGATAGAAATTAAACTATAACAAAGCGCAGGTTATTTTTTGGAATACAATTATTTACAATTGTACGTTGAACCAACTTTCTTGTTTGAATTAATACAAAAATATTTTCGCTATTCTGCAG

mRNA sequence

ATGTATTACAGTTTTGCTATCATATTACAGCTAATCAAGTTTATTTTCAGTTGTTTTTGGACACGCAATATTCGGTACGATATACTTCGTATACTACAAAGTCTGCTTATGAGAAGCTGGAAAATTGGTGACAGTACCCAGGTTTTACAAAGGCAAGATATTTTCTCCAAACCGGTACACTCAAGAGGAGATCGACGATGTTCGAGAAAAATGGAGCAGCTATTTTTATTAATAGTTGGATTAGATAGCGTGCAAGTAAAAGGACATATATCTATGAGTTATCGGACTTGGCAAGCCAACAACAAAGGATCTCGAAAGTCTCTAAGATGGAAAAAATTTATATGTTCTCGCGAACCGGAAATGCTTGAATGTTGCTATTACGTCATGAAGTACATGTATCAAATAGTTTTACTTGGATTACAAAGTATTAGTAATGTGGAAGAGATATTTTCTCCAAACCCATACACTCAAGAGGAGATCGATGATGTTCGAGAAAAATGGAGTAGATATTTTATTAGTAGTTTGTAGTCATTTTCTAGTTTTCACAGATAGAAATTAAACTATAACAAAGCGCAGGTTATTTTTTGGAATACAATTATTTACAATTGTACGTTGAACCAACTTTCTTGTTTGAATTAATACAAAAATATTTTCGCTATTCTGCAG

Coding sequence (CDS)

ATGTATTACAGTTTTGCTATCATATTACAGCTAATCAAGTTTATTTTCAGTTGTTTTTGGACACGCAATATTCGGTACGATATACTTCGTATACTACAAAGTCTGCTTATGAGAAGCTGGAAAATTGGTGACAGTACCCAGGTTTTACAAAGGCAAGATATTTTCTCCAAACCGGTACACTCAAGAGGAGATCGACGATGTTCGAGAAAAATGGAGCAGCTATTTTTATTAATAGTTGGATTAGATAGCGTGCAAGTAAAAGGACATATATCTATGAGTTATCGGACTTGGCAAGCCAACAACAAAGGATCTCGAAAGTCTCTAAGATGGAAAAAATTTATATGTTCTCGCGAACCGGAAATGCTTGAATGTTGCTATTACGTCATGAAGTACATGTATCAAATAGTTTTACTTGGATTACAAAGTATTAGTAATGTGGAAGAGATATTTTCTCCAAACCCATACACTCAAGAGGAGATCGATGATGTTCGAGAAAAATGGAGTAGATATTTTATTAGTAGTTTGTAG

Protein sequence

MYYSFAIILQLIKFIFSCFWTRNIRYDILRILQSLLMRSWKIGDSTQVLQRQDIFSKPVHSRGDRRCSRKMEQLFLLIVGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLLGLQSISNVEEIFSPNPYTQEEIDDVREKWSRYFISSL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo01961	Spo01961	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo01961.1	Spo01961.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo01961.1.CDS.6	Spo01961.1.CDS.6	CDS
Spo01961.1.CDS.5	Spo01961.1.CDS.5	CDS
Spo01961.1.CDS.4	Spo01961.1.CDS.4	CDS
Spo01961.1.CDS.3	Spo01961.1.CDS.3	CDS
Spo01961.1.CDS.2	Spo01961.1.CDS.2	CDS
Spo01961.1.CDS.1	Spo01961.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo01961.1.utr3p.1	Spo01961.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo01961.1.exon.6	Spo01961.1.exon.6	exon
Spo01961.1.exon.5	Spo01961.1.exon.5	exon
Spo01961.1.exon.4	Spo01961.1.exon.4	exon
Spo01961.1.exon.3	Spo01961.1.exon.3	exon
Spo01961.1.exon.2	Spo01961.1.exon.2	exon
Spo01961.1.exon.1	Spo01961.1.exon.1	exon

Homology

[Close]

BLAST of Spo01961.1 vs. NCBI nr
Match: gi|902228689|gb|KNA21218.1| (hypothetical protein SOVF_045340 isoform B [Spinacia oleracea])

HSP 1 Score: 185.3 bits (469), Expect = 9.300e-44
Identity = 89/97 (91.75%), Postives = 91/97 (93.81%), Query Frame = 1

		  
Query: 79  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 138
           VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWK+ ICSREPEM EC YYVMKYMYQIVLL
Sbjct: 73  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKEIICSREPEMSECGYYVMKYMYQIVLL 132

Query: 139 GLQSISNVEEIFSPNPYTQEEIDDVREKWSRYFISSL 176
           GLQSISNVEEIFSPNPYTQEEI+DVREKWSRYF   L
Sbjct: 133 GLQSISNVEEIFSPNPYTQEEINDVREKWSRYFXCRL 169

[Close]

BLAST of Spo01961.1 vs. NCBI nr
Match: gi|902228688|gb|KNA21217.1| (hypothetical protein SOVF_045340 isoform A [Spinacia oleracea])

HSP 1 Score: 179.5 bits (454), Expect = 5.100e-42
Identity = 89/101 (88.12%), Postives = 91/101 (90.10%), Query Frame = 1

		  
Query: 79  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 138
           VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWK+ ICSREPEM EC YYVMKYMYQIVLL
Sbjct: 73  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKEIICSREPEMSECGYYVMKYMYQIVLL 132

Query: 139 GLQSISNVEE----IFSPNPYTQEEIDDVREKWSRYFISSL 176
           GLQSISNVEE    IFSPNPYTQEEI+DVREKWSRYF   L
Sbjct: 133 GLQSISNVEEVRVHIFSPNPYTQEEINDVREKWSRYFXCRL 173

[Close]

BLAST of Spo01961.1 vs. NCBI nr
Match: gi|902150993|gb|KNA05474.1| (hypothetical protein SOVF_190000, partial [Spinacia oleracea])

HSP 1 Score: 88.2 bits (217), Expect = 1.600e-14
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1

		  
Query: 129 MKYMYQIVLLGLQSISNVEEIFSPNPYTQEEIDDVREKWSRYFISS 175
           M+YMYQIVLLGLQSI N+EEIFSPNPYTQE+IDDVREKW RYFISS
Sbjct: 29  MEYMYQIVLLGLQSIRNMEEIFSPNPYTQEKIDDVREKWRRYFISS 74

[Close]

BLAST of Spo01961.1 vs. NCBI nr
Match: gi|902210064|gb|KNA16336.1| (hypothetical protein SOVF_088860, partial [Spinacia oleracea])

HSP 1 Score: 76.3 bits (186), Expect = 6.100e-11
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1

		  
Query: 93  SYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 139
           +YRTWQANNK SRK L WK+  CS EPEMLEC Y V+KYMYQIVLL
Sbjct: 1   TYRTWQANNKESRKPLTWKEITCSHEPEMLECGYSVLKYMYQIVLL 46

[Close]

BLAST of Spo01961.1 vs. NCBI nr
Match: gi|731364837|ref|XP_010694195.1| (PREDICTED: uncharacterized protein LOC104907040 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 62.0 bits (149), Expect = 1.200e-6
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1

		  
Query: 83  SVQVKGHISMSYRTWQANN-KGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLLGLQ 142
           S+ +K  +  +Y  ++    KG    L+W    C+++    EC YYVMK+M++I+    +
Sbjct: 823 SLAIKDSLDRAYSVYKVQGRKGRGSKLKWFSIECAKQTVDTECGYYVMKFMHEIIT-SYK 882

Query: 143 SISNVEEIFS--PNPYTQEEIDDVREKWSRYFISSL 176
              N+E+ +     PY  EEID+VRE+W+ +F   L
Sbjct: 883 DCQNLEKEYQRRDEPYNDEEIDEVREQWAAFFTKYL 917

[Close]

BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RP18_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045340 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.500e-44
Identity = 89/97 (91.75%), Postives = 91/97 (93.81%), Query Frame = 1

		  
Query: 79  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 138
           VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWK+ ICSREPEM EC YYVMKYMYQIVLL
Sbjct: 73  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKEIICSREPEMSECGYYVMKYMYQIVLL 132

Query: 139 GLQSISNVEEIFSPNPYTQEEIDDVREKWSRYFISSL 176
           GLQSISNVEEIFSPNPYTQEEI+DVREKWSRYF   L
Sbjct: 133 GLQSISNVEEIFSPNPYTQEEINDVREKWSRYFXCRL 169

[Close]

BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQW3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045340 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.600e-42
Identity = 89/101 (88.12%), Postives = 91/101 (90.10%), Query Frame = 1

		  
Query: 79  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 138
           VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWK+ ICSREPEM EC YYVMKYMYQIVLL
Sbjct: 73  VGLDSVQVKGHISMSYRTWQANNKGSRKSLRWKEIICSREPEMSECGYYVMKYMYQIVLL 132

Query: 139 GLQSISNVEE----IFSPNPYTQEEIDDVREKWSRYFISSL 176
           GLQSISNVEE    IFSPNPYTQEEI+DVREKWSRYF   L
Sbjct: 133 GLQSISNVEEVRVHIFSPNPYTQEEINDVREKWSRYFXCRL 173

[Close]

BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDX8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_190000 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-14
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1

		  
Query: 129 MKYMYQIVLLGLQSISNVEEIFSPNPYTQEEIDDVREKWSRYFISS 175
           M+YMYQIVLLGLQSI N+EEIFSPNPYTQE+IDDVREKW RYFISS
Sbjct: 29  MEYMYQIVLLGLQSIRNMEEIFSPNPYTQEKIDDVREKWRRYFISS 74

[Close]

BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RA00_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_088860 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.300e-11
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1

		  
Query: 93  SYRTWQANNKGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLL 139
           +YRTWQANNK SRK L WK+  CS EPEMLEC Y V+KYMYQIVLL
Sbjct: 1   TYRTWQANNKESRKPLTWKEITCSHEPEMLECGYSVLKYMYQIVLL 46

[Close]

BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEQ8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g091570 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.300e-7
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1

		  
Query: 83  SVQVKGHISMSYRTWQANN-KGSRKSLRWKKFICSREPEMLECCYYVMKYMYQIVLLGLQ 142
           S+ +K  +  +Y  ++    KG    L+W    C+++    EC YYVMK+M++I+    +
Sbjct: 634 SLAIKDSLDRAYSVYKVQGRKGRGSKLKWFSIECAKQTVDTECGYYVMKFMHEIIT-SYK 693

Query: 143 SISNVEEIFS--PNPYTQEEIDDVREKWSRYFISSL 176
              N+E+ +     PY  EEID+VRE+W+ +F   L
Sbjct: 694 DCQNLEKEYQRRDEPYNDEEIDEVREQWAAFFTKYL 728

The following BLAST results are available for this feature:

BLAST of Spo01961.1 vs. NCBI nr
BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
BLAST of Spo01961.1 vs. ExPASy Swiss-Prot
BLAST of Spo01961.1 vs. TAIR (Arabidopsis)

BLAST of Spo01961.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902228689\|gb\|KNA21218.1\|	9.3e-44	91.7	hypothetical protein SOVF_0453...	[more]
gi\|902228688\|gb\|KNA21217.1\|	5.1e-42	88.1	hypothetical protein SOVF_0453...	[more]
gi\|902150993\|gb\|KNA05474.1\|	1.6e-14	89.1	hypothetical protein SOVF_1900...	[more]
gi\|902210064\|gb\|KNA16336.1\|	6.1e-11	76.0	hypothetical protein SOVF_0888...	[more]
gi\|731364837\|ref\|XP_010694195.1\|	1.2e-6	32.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo01961.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RP18_SPIOL	6.5e-44	91.7	Uncharacterized protein OS=Spi...	[more]
A0A0K9RQW3_SPIOL	3.6e-42	88.1	Uncharacterized protein OS=Spi...	[more]
A0A0K9QDX8_SPIOL	1.1e-14	89.1	Uncharacterized protein (Fragm...	[more]
A0A0K9RA00_SPIOL	4.3e-11	76.0	Uncharacterized protein (Fragm...	[more]
A0A0J8BEQ8_BETVU	8.3e-7	32.2	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo01961.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo01961.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description