Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTGATGCAAGGAAGAGAAGAACCCTCCCTAGACGCAACAACAGAACCAGATTTCGAGGTTGAGCCATGGAGCGGCGAAGAAGAAGAAGAAGACACACCAACCACGACGAGGAAGAAGAGGAAGAGCAGAAACAACAAGAGGAGGTTTAGTGATGAACAAGTTAAGTCATTGGAAACTATATTTGAATCAGAAACAAAGCTTGATCCGAGGAAGAAGGTGCAGGTGGCTAGGGAGTTGGGTTTGCAGCCTAGACAGGTAGCTATATGGTTTCAGAACAAACGAGCTAGGTGGAAAACCAAGCAGATTGAAAAGAATTACAGAGTACTCAAATCCAACTATGATAATCTTAAAGTTAGACTAGAAGGTATCAAGAAAGAAAGAGAGTCCTTGCTACAACAGGTATGTTTGTTTCTGGTTTCATAATTTCTGCATTCGATAACACAGAGTTAACAGTTTATCAGTAACTTTTCAACAGTTGCAGGAACTACGTAGTGTTGTAGAGAAATCACATGATAAAGAGAACGGATGCAAGGATGTGGCGGCCAAAGAAAACGGGGAAATTGCTGCAGGAGTAACGGAAAAATCGAGCAGCTTACAGGAAGAAATGGACAACCAAGGAGCACTTTACTCAGACGACGATAAGAGTGGAAACATGATATATTTGGGGCCGGAGGAGCCTGACCTTATGAAAGTAAGAGAACACATAGACGGTTCTATAATATCACCACCGGTTAAATGGTGTAGCTTTGATGCCGGGAGTTTGTTTGATCAGACAAATAGCAGTTCCCACTGGTGGGATAACTGGACCTGATGCATCTATTGAGAAACAGAAGAAAGTGGAATATGTTGAGGAAGGAGGGATTGGTGTTGGCAAAGACAGAAATAAGTGCGGTGTTTTGTGATTTATGTGATTGCATGAAAGTTGTGAGCATCTCTGTGACTGTGTCTGACTAGAAATGAGAGCTAGTATGTAGAAAGAGTAATGTTAGAATTGAGTATGTAAAGAAAGATTGTAATCTAGTGTAATGGGATAAGAGAATAATTCTCCAAATTTAGCATGCATCTCTTAAGTTTTTATACTCCGTAATTTGTTGCAACATTGTGAAATACCAAAGAAGACAACTATACCTTGAAAAAGATCACCGACTTTTCATATCAGTCCACTCTTCAGAACATAGACTCAAATTTGCAGAAAATAAACCGCAAAGTGAAAAATGTCAGAAAACAACATAATTGTAATCATAATTGTAAACCTCTATTGAAGGAAGCTAAAAGATTCAAAGAAACCGGA ATGCTGATGCAAGGAAGAGAAGAACCCTCCCTAGACGCAACAACAGAACCAGATTTCGAGGTTGAGCCATGGAGCGGCGAAGAAGAAGAAGAAGACACACCAACCACGACGAGGAAGAAGAGGAAGAGCAGAAACAACAAGAGGAGGTTTAGTGATGAACAAGTTAAGTCATTGGAAACTATATTTGAATCAGAAACAAAGCTTGATCCGAGGAAGAAGGTGCAGGTGGCTAGGGAGTTGGGTTTGCAGCCTAGACAGGTAGCTATATGGTTTCAGAACAAACGAGCTAGGTGGAAAACCAAGCAGATTGAAAAGAATTACAGAGTACTCAAATCCAACTATGATAATCTTAAAGTTAGACTAGAAGGTATCAAGAAAGAAAGAGAGTCCTTGCTACAACAGTTGCAGGAACTACGTAGTGTTGTAGAGAAATCACATGATAAAGAGAACGGATGCAAGGATGTGGCGGCCAAAGAAAACGGGGAAATTGCTGCAGGAGTAACGGAAAAATCGAGCAGCTTACAGGAAGAAATGGACAACCAAGGAGCACTTTACTCAGACGACGATAAGAGTGGAAACATGATATATTTGGGGCCGGAGGAGCCTGACCTTATGAAAGTAAGAGAACACATAGACGGTTCTATAATATCACCACCGGTTAAATGGTGTAGCTTTGATGCCGGGAGTTTGTTTGATCAGACAAATAGCAGTTCCCACTGGTGGGATAACTGGACCTGATGCATCTATTGAGAAACAGAAGAAAGTGGAATATGTTGAGGAAGGAGGGATTGGTGTTGGCAAAGACAGAAATAAGTGCGGTGTTTTGTGATTTATGTGATTGCATGAAAGTTGTGAGCATCTCTGTGACTGTGTCTGACTAGAAATGAGAGCTAGTATGTAGAAAGAGTAATGTTAGAATTGAGTATGTAAAGAAAGATTGTAATCTAGTGTAATGGGATAAGAGAATAATTCTCCAAATTTAGCATGCATCTCTTAAGTTTTTATACTCCGTAATTTGTTGCAACATTGTGAAATACCAAAGAAGACAACTATACCTTGAAAAAGATCACCGACTTTTCATATCAGTCCACTCTTCAGAACATAGACTCAAATTTGCAGAAAATAAACCGCAAAGTGAAAAATGTCAGAAAACAACATAATTGTAATCATAATTGTAAACCTCTATTGAAGGAAGCTAAAAGATTCAAAGAAACCGGA ATGCTGATGCAAGGAAGAGAAGAACCCTCCCTAGACGCAACAACAGAACCAGATTTCGAGGTTGAGCCATGGAGCGGCGAAGAAGAAGAAGAAGACACACCAACCACGACGAGGAAGAAGAGGAAGAGCAGAAACAACAAGAGGAGGTTTAGTGATGAACAAGTTAAGTCATTGGAAACTATATTTGAATCAGAAACAAAGCTTGATCCGAGGAAGAAGGTGCAGGTGGCTAGGGAGTTGGGTTTGCAGCCTAGACAGGTAGCTATATGGTTTCAGAACAAACGAGCTAGGTGGAAAACCAAGCAGATTGAAAAGAATTACAGAGTACTCAAATCCAACTATGATAATCTTAAAGTTAGACTAGAAGGTATCAAGAAAGAAAGAGAGTCCTTGCTACAACAGTTGCAGGAACTACGTAGTGTTGTAGAGAAATCACATGATAAAGAGAACGGATGCAAGGATGTGGCGGCCAAAGAAAACGGGGAAATTGCTGCAGGAGTAACGGAAAAATCGAGCAGCTTACAGGAAGAAATGGACAACCAAGGAGCACTTTACTCAGACGACGATAAGAGTGGAAACATGATATATTTGGGGCCGGAGGAGCCTGACCTTATGAAAGTAAGAGAACACATAGACGGTTCTATAATATCACCACCGGTTAAATGGTGTAGCTTTGATGCCGGGAGTTTGTTTGATCAGACAAATAGCAGTTCCCACTGGTGGGATAACTGGACCTGA MLMQGREEPSLDATTEPDFEVEPWSGEEEEEDTPTTTRKKRKSRNNKRRFSDEQVKSLETIFESETKLDPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQIEKNYRVLKSNYDNLKVRLEGIKKERESLLQQLQELRSVVEKSHDKENGCKDVAAKENGEIAAGVTEKSSSLQEEMDNQGALYSDDDKSGNMIYLGPEEPDLMKVREHIDGSIISPPVKWCSFDAGSLFDQTNSSSHWWDNWT Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo22351.1 vs. NCBI nr
Match: gi|902179300|gb|KNA09326.1| (hypothetical protein SOVF_154640 [Spinacia oleracea]) HSP 1 Score: 479.9 bits (1234), Expect = 2.600e-132 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1
BLAST of Spo22351.1 vs. NCBI nr
Match: gi|731371838|ref|XP_010666163.1| (PREDICTED: homeobox-leucine zipper protein ATHB-12-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 332.8 bits (852), Expect = 5.100e-88 Identity = 179/252 (71.03%), Postives = 209/252 (82.94%), Query Frame = 1
BLAST of Spo22351.1 vs. NCBI nr
Match: gi|870843056|gb|KMS96323.1| (hypothetical protein BVRB_000370 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 332.8 bits (852), Expect = 5.100e-88 Identity = 179/252 (71.03%), Postives = 209/252 (82.94%), Query Frame = 1
BLAST of Spo22351.1 vs. NCBI nr
Match: gi|220702719|gb|ACL81158.1| (homeobox leucine zipper protein [Mirabilis jalapa]) HSP 1 Score: 267.3 bits (682), Expect = 2.600e-68 Identity = 150/254 (59.06%), Postives = 196/254 (77.17%), Query Frame = 1
BLAST of Spo22351.1 vs. NCBI nr
Match: gi|719964097|ref|XP_010251668.1| (PREDICTED: homeobox-leucine zipper protein ATHB-12-like isoform X1 [Nelumbo nucifera]) HSP 1 Score: 203.4 bits (516), Expect = 4.600e-49 Identity = 109/219 (49.77%), Postives = 145/219 (66.21%), Query Frame = 1
BLAST of Spo22351.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QS26_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_154640 PE=4 SV=1) HSP 1 Score: 479.9 bits (1234), Expect = 1.800e-132 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1
BLAST of Spo22351.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8M1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_000370 PE=4 SV=1) HSP 1 Score: 332.8 bits (852), Expect = 3.500e-88 Identity = 179/252 (71.03%), Postives = 209/252 (82.94%), Query Frame = 1
BLAST of Spo22351.1 vs. UniProtKB/TrEMBL
Match: B8YIB0_MIRJA (Homeobox leucine zipper protein OS=Mirabilis jalapa PE=2 SV=1) HSP 1 Score: 267.3 bits (682), Expect = 1.800e-68 Identity = 150/254 (59.06%), Postives = 196/254 (77.17%), Query Frame = 1
BLAST of Spo22351.1 vs. UniProtKB/TrEMBL
Match: K4MNF8_MEDSA (Homeobox-leucine zipper protein OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 5.300e-44 Identity = 110/244 (45.08%), Postives = 153/244 (62.70%), Query Frame = 1
BLAST of Spo22351.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QQP4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G111400 PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 2.700e-43 Identity = 107/220 (48.64%), Postives = 145/220 (65.91%), Query Frame = 1
BLAST of Spo22351.1 vs. ExPASy Swiss-Prot
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=1 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 7.200e-42 Identity = 104/221 (47.06%), Postives = 144/221 (65.16%), Query Frame = 1
BLAST of Spo22351.1 vs. ExPASy Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=1 SV=2) HSP 1 Score: 154.5 bits (389), Expect = 1.500e-36 Identity = 109/244 (44.67%), Postives = 145/244 (59.43%), Query Frame = 1
BLAST of Spo22351.1 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica GN=HOX6 PE=2 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.100e-26 Identity = 58/104 (55.77%), Postives = 86/104 (82.69%), Query Frame = 1
BLAST of Spo22351.1 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica GN=HOX6 PE=2 SV=2) HSP 1 Score: 121.7 bits (304), Expect = 1.100e-26 Identity = 58/104 (55.77%), Postives = 86/104 (82.69%), Query Frame = 1
BLAST of Spo22351.1 vs. ExPASy Swiss-Prot
Match: ATHB6_ARATH (Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 8.000e-25 Identity = 70/152 (46.05%), Postives = 99/152 (65.13%), Query Frame = 1
BLAST of Spo22351.1 vs. TAIR (Arabidopsis)
Match: AT3G61890.1 (homeobox 12) HSP 1 Score: 172.2 bits (435), Expect = 4.000e-43 Identity = 104/221 (47.06%), Postives = 144/221 (65.16%), Query Frame = 1
BLAST of Spo22351.1 vs. TAIR (Arabidopsis)
Match: AT2G46680.1 (homeobox 7) HSP 1 Score: 154.5 bits (389), Expect = 8.700e-38 Identity = 109/244 (44.67%), Postives = 145/244 (59.43%), Query Frame = 1
BLAST of Spo22351.1 vs. TAIR (Arabidopsis)
Match: AT2G22430.1 (homeobox protein 6) HSP 1 Score: 115.5 bits (288), Expect = 4.500e-26 Identity = 70/152 (46.05%), Postives = 99/152 (65.13%), Query Frame = 1
BLAST of Spo22351.1 vs. TAIR (Arabidopsis)
Match: AT4G40060.1 (homeobox protein 16) HSP 1 Score: 112.5 bits (280), Expect = 3.800e-25 Identity = 59/129 (45.74%), Postives = 87/129 (67.44%), Query Frame = 1
BLAST of Spo22351.1 vs. TAIR (Arabidopsis)
Match: AT5G65310.1 (homeobox protein 5) HSP 1 Score: 108.6 bits (270), Expect = 5.500e-24 Identity = 66/148 (44.59%), Postives = 95/148 (64.19%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22351.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22351.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22351.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22351.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|