Spo13210.1 (mRNA)

Overview
NameSpo13210.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01451 : 83647 .. 84003 (+)
Sequence length357
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAATCAATCCTATCAAATTCCGGCAAGGCTCCACCAAGTCCGGCCACCGTGAACGACGGAGAAGATGCCGTGGAGATCCGTCAATCAAAGAAGAGGAAAAACTGCCCAACTTTCTCTCTTCTTCAATTGAACAAAAAACTTATTGATGGGCAATCAAATTCAAGCTTTACCTTCTCTTTCCCCACTGATGAACTCACTACCACGACTCCCGATGTGACTCCCAAATTCGGATTCTTCAATTCGGGTAAGGATACGAGTACTGGGTTGTCGTCGGAAAGTGGCCGTTCTTGTCAAGCTCCAGCGAAGAACAGCGAGGGAATTACAGCGGTTGAAGAAGCTGACAAGATTTGA

mRNA sequence

ATGGCAGAATCAATCCTATCAAATTCCGGCAAGGCTCCACCAAGTCCGGCCACCGTGAACGACGGAGAAGATGCCGTGGAGATCCGTCAATCAAAGAAGAGGAAAAACTGCCCAACTTTCTCTCTTCTTCAATTGAACAAAAAACTTATTGATGGGCAATCAAATTCAAGCTTTACCTTCTCTTTCCCCACTGATGAACTCACTACCACGACTCCCGATGTGACTCCCAAATTCGGATTCTTCAATTCGGGTAAGGATACGAGTACTGGGTTGTCGTCGGAAAGTGGCCGTTCTTGTCAAGCTCCAGCGAAGAACAGCGAGGGAATTACAGCGGTTGAAGAAGCTGACAAGATTTGA

Coding sequence (CDS)

ATGGCAGAATCAATCCTATCAAATTCCGGCAAGGCTCCACCAAGTCCGGCCACCGTGAACGACGGAGAAGATGCCGTGGAGATCCGTCAATCAAAGAAGAGGAAAAACTGCCCAACTTTCTCTCTTCTTCAATTGAACAAAAAACTTATTGATGGGCAATCAAATTCAAGCTTTACCTTCTCTTTCCCCACTGATGAACTCACTACCACGACTCCCGATGTGACTCCCAAATTCGGATTCTTCAATTCGGGTAAGGATACGAGTACTGGGTTGTCGTCGGAAAGTGGCCGTTCTTGTCAAGCTCCAGCGAAGAACAGCGAGGGAATTACAGCGGTTGAAGAAGCTGACAAGATTTGA

Protein sequence

MAESILSNSGKAPPSPATVNDGEDAVEIRQSKKRKNCPTFSLLQLNKKLIDGQSNSSFTFSFPTDELTTTTPDVTPKFGFFNSGKDTSTGLSSESGRSCQAPAKNSEGITAVEEADKI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo13210Spo13210gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo13210.1Spo13210.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13210.1.exon.1Spo13210.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13210.1.CDS.1Spo13210.1.CDS.1CDS


Homology
[Close]
BLAST of Spo13210.1 vs. NCBI nr
Match: gi|902155097|gb|KNA05876.1| (hypothetical protein SOVF_186330 [Spinacia oleracea])

HSP 1 Score: 228.8 bits (582), Expect = 5.000e-57
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MAESILSNSGKAPPSPATVNDGEDAVEIRQSKKRKNCPTFSLLQLNKKLIDGQSNSSFTF 60
           MAESILSNSGKAPPSPATVNDGEDAVEIRQSKKRKNCPTFSLLQLNKKLIDGQSNSSFTF
Sbjct: 1   MAESILSNSGKAPPSPATVNDGEDAVEIRQSKKRKNCPTFSLLQLNKKLIDGQSNSSFTF 60

Query: 61  SFPTDELTTTTPDVTPKFGFFNSGKDTSTGLSSESGRSCQAPAKNSEGITAVEEADKI 119
           SFPTDELTTTTPDVTPKFGFFNSGKDTSTGLSSESGRSCQAPAKNSEGITAVEEADKI
Sbjct: 61  SFPTDELTTTTPDVTPKFGFFNSGKDTSTGLSSESGRSCQAPAKNSEGITAVEEADKI 118
[Close]
BLAST of Spo13210.1 vs. NCBI nr
Match: gi|870864128|gb|KMT15261.1| (hypothetical protein BVRB_3g063700 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 105.9 bits (263), Expect = 4.900e-20
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 1 

		  

Query: 7   SNSGKAPPSPATVNDGEDAVEIRQSKKRKNCPTFSLLQLNKKLIDGQSNSSFTFSFPTDE 66
           S+SGK P   AT+   +D VE R+SK+RKNCP+FSLLQL  K+IDGQSNSSF FSFPTDE
Sbjct: 31  SDSGKPPSIRATI---DDVVETRKSKRRKNCPSFSLLQL-NKIIDGQSNSSFNFSFPTDE 90

Query: 67  LTTTTPDVTPKFGFFNSGKDTS 89
           LTTTTP+ TPKFG FNSG  +S
Sbjct: 91  LTTTTPETTPKFGSFNSGHGSS 108
[Close]
BLAST of Spo13210.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QH23_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_186330 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.500e-57
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MAESILSNSGKAPPSPATVNDGEDAVEIRQSKKRKNCPTFSLLQLNKKLIDGQSNSSFTF 60
           MAESILSNSGKAPPSPATVNDGEDAVEIRQSKKRKNCPTFSLLQLNKKLIDGQSNSSFTF
Sbjct: 1   MAESILSNSGKAPPSPATVNDGEDAVEIRQSKKRKNCPTFSLLQLNKKLIDGQSNSSFTF 60

Query: 61  SFPTDELTTTTPDVTPKFGFFNSGKDTSTGLSSESGRSCQAPAKNSEGITAVEEADKI 119
           SFPTDELTTTTPDVTPKFGFFNSGKDTSTGLSSESGRSCQAPAKNSEGITAVEEADKI
Sbjct: 61  SFPTDELTTTTPDVTPKFGFFNSGKDTSTGLSSESGRSCQAPAKNSEGITAVEEADKI 118
[Close]
BLAST of Spo13210.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FH80_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g063700 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.400e-20
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 1 

		  

Query: 7   SNSGKAPPSPATVNDGEDAVEIRQSKKRKNCPTFSLLQLNKKLIDGQSNSSFTFSFPTDE 66
           S+SGK P   AT+   +D VE R+SK+RKNCP+FSLLQL  K+IDGQSNSSF FSFPTDE
Sbjct: 31  SDSGKPPSIRATI---DDVVETRKSKRRKNCPSFSLLQL-NKIIDGQSNSSFNFSFPTDE 90

Query: 67  LTTTTPDVTPKFGFFNSGKDTS 89
           LTTTTP+ TPKFG FNSG  +S
Sbjct: 91  LTTTTPETTPKFGSFNSGHGSS 108
The following BLAST results are available for this feature:
BLAST of Spo13210.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902155097|gb|KNA05876.1|5.0e-57100.hypothetical protein SOVF_1863... [more]
gi|870864128|gb|KMT15261.1|4.9e-2069.5hypothetical protein BVRB_3g06... [more]
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BLAST of Spo13210.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QH23_SPIOL3.5e-57100.Uncharacterized protein OS=Spi... [more]
A0A0J8FH80_BETVU3.4e-2069.5Uncharacterized protein OS=Bet... [more]
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BLAST of Spo13210.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo13210.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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