Spo11751.1 (mRNA)

Overview
NameSpo11751.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 57585601 .. 57589164 (+)
Sequence length1383
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCACCTGAATCAGTAATTTTAGGGAAATTGCGATGCATAATCATAACATTTTTGGTAAACAAGATCACACAAAAGAAAATCTACAGCCTGTGTCCTTGGCTAACAGTCTAACACACCCTGTCCAATATAACCTTCCAAAAATATAAATTATTCAAATATTTTTTTAATTTTTTTTTTCTTTTAAAAAAAAAGGTAGGCTTAGCTGGCGGTTGTCTATATATTAACAACCTTATTCAACGCCGCAGAATGATTGTCGGAGCAGCAAATTAAAAACCTTGGTTTTTGGTTTTCTATAAAAACTAGTTTGTTTTCACTTTTCTCGTTGCATTCTCCTTTTATTTTCTATATTTTTGATTTCCTATTAAGCCCTCCCTTTTCCTCTCTCTCTCCTAACAAGAGTTTTTGAATAAAGCTTTTGAAAGGAAGGAAGAGAAAGGGATAAAAGAGTAAAATCATAAATAGAAATGGGAAACTGCGCGAACAAGCCGTTGACAACAGAAGGAGATGCCCCCGCAGAGGCACCGGAGCAGAAGGTAGCCGTAGAGGAGAGAGAAATTGAAGTTGATCAAAACAAGGTTCCTTCTCTCGCTCAAATGTTGGAGGTCATTCATTTTATTATTACAGTACTATTTTATTTTATTTTTTTCATTGGAGGTAATCATGGGTTTTAATTTGCTTTTGGATACATAATTATGAAAATTATACTCGAATTAAAAAGAATTTAAAATTTTACGTAGCCTTTCCTTAAAAAACAACACGCGATTTATGATAATATTTTTTAAAACAATACTTAAATGTAGCCGTTATGTAATGTGTCGCTCAATATATGGTAGGAATGCATATTCGGATATTTAATCGTTTATTTGAAACATCTCAAAATTACTCCAGTGATTCTTTAAACATGTGACTATTAATTTCGGATAGAGGAATATATTTTCTTTGTACGATTTTTATTTTTGTTTTTAGGATGTCTGGAATAATTTGTAGACCCCGTTAAAAAAATACTAATAATTACTACTTTCAAAAACAAAAAATAAAATAAAAAATTTAAACATACCAAAACCCATCTTAACCTAAATTTTGAATTTTGGAGTTATTGAATGCTCGAATATATTGTACGGAGTAAAAATAAGAAAGAGTTCGAGGCCTAATCCGAAAAAATCACAATTGACAAGTCTAGTATGAGAAGTAGTTCATTTTCAGATGATATATTTTTGACATGTTAGTTTTACAATTTTGAAACGTAATTGTAGATGTTGAGTTGGTTGACGTGTTATCTTACAATTAATGGATAGACAAACTTATAAATATAAATAAGTAGTAATCCGTATGGAAAAATTAGCAATACAATATTATCATCAACCAACACCATCATACTATCAATTATTGCAGCATTTTTTGCTCAATGAAAATAATACTTTTTATTAAATAAACGTTACTTCGTAGCACTCTGTTAACACCTTGTTAGTTAAAGTAGATAGTAAAAGTTATGCCTCAAAGTCTCAAACCACGTAGTAGGGTTCACGAGAGTGATGGATAGCTCAGTTGATTAGAGCTTCCATTCCGGTTCCAGGTGATATTGGGATCGATTCTCATCCCCGCCCTTGTGGCTTATCCGCACCAAAAAAAGAAAAGAAAAAACACGTAGTAGGGTTCATAACGAGGAATCATCTCCTTAATTAAGTTCCGTTAATTAGTACTTCCTAGTTAGTAAACATTATAATTGTCGATTTTGAGTGTTGTCCTTTCTTATTTCTTTCACAGCTGTTCTTGGGACCGGCCATTTGTTGATTGTTCATCACAAATCATAAGTCCATCTTTTCCTTATGTGGCCAATCTTAGCGCATGTTAAGGGGAAAAAAACACCATAATAAGTCTAAGTGAATGCCTTCTATTCAATTGTCCTTACCTTTTCATGTCTTTGTATTCCTTGCAACATTAGTTTGTCTTCTAGACGGTTTCCTCTATTCTCTTGTCTGTAAAGATCCTTGTGGGTCGTGCTTCGTGCCAAACCCGCGTGCCATGAGTTTTAATGGGTCCAGTCCACGCCAAGCCACTTGTTTATTGTCGGGCCAAAAGTTTCTAAAGGGTCGCTTAGGTGCGGCTCAATCTCATGTGTCATCCTGTCGGACTTTGGTGTCTAAGCCCAATTTCGCTCAATCATTTAACGTGCTTCGTCATTTCAGGCCTTGCATTTTCCAAAAAAGTGTCATGGGCTCAGCCCATGTCGTCCCTTGGGCTGGGCTGCCGCACTGCCAAATTATTATTATTAACCCCTTAAATTTTTTTTTGTTTGTGCGAATTACGAAGTAGCTATTAGAGCAATATATAAAAATTACAAACGGAAGAGTGTGAATTCGAACCGAGACACATCGTACACAAGCATTAAGGCTAACCATTAGGCCAATATTCCAATGGTGCCTTTGATTGTTTGTGATATTTTTACCTTTGCCCCTACATGTGTATGTCTTGTATAGAGACCTGCATGGTTAAATCCCGTACACATCATATAGACATGTCTACAAAAAATAAAATGAAATTATGCAACGCTCAACCTTAATTATTAATCTAATGTATATTACTTGGGGGTGTCACTTATTCGTTCATGCATGTAATGGCTATATGAAATGATTGTATTTGGACGAAGTTGTTGAAGTGAACATGTGTGCATGACATCCTGATTTTGCTCATGTTTTCTTCATTATTCTGTTAGTCAACCAAATTGTTATTTTTTTGAAATAATTTCTGAAAACATATATTCTTTGAAATCTGTTTGTTTGCAGGATGATGGAAAGAAGCCGGAAGCTGAGGGAGTCGCAAAGCCAGCCGAGGAGAAGAAGCCCTCAGAGACACCAATTAAGGTTGAAGAAGTAGCCAAAGAAGTGGCTGTCGAGACCAAGAAAGAAGATGTTTCAAAGCCGGCAGCCTCTGAGCCGCCTAAGCCAGAAGCCTCTGCGCCGAAGAAAGAAGAGACTAAGCCAGTTGTGGTTCCAGCCCCGGCTCCAGCCCCGGCTCCAGCCACAGCTGAGAAGAAAGTGGAAGAGAAGAAATCTGAGACTAAATGAAGATAATATTAAATGGTTATTCTTCTTTAAAACAAAAGAAAATTGAGGGGATAAAAAATAACACAAAAGAAATTTATTTTATTAATATAATTAAGTTTGTGATTGGATAGAATTATTTATTAATTGAAGAATTAGTTGATTTGGGATTTTGTTTAAATGGATATATATATATATATATATAATATATATATATATATATATATATATATATATATATATATATAATTGTATGGGGGGAGAGAGTGGGTTTCATGATTTGTGTTTTCGTAGATTGATTGTGTTTATGTATTTTTTCTTCTTTTGTGTTTTTGTTCTTTTGCTTTTGTAAACATCTGGGTTTTGTTGGATTGTTCAAACTTCAAATTAATATCGAATTGCTTTTATTAATTTAATTAATATTTTGTTGATTCAATCTTAAGGCCCTGTTCTTCTGAACTATGTTTGGCTGAACTGAACTGAATGGAACTAAATAAATAGTACATAAATAAATAATAAA

mRNA sequence

CTCTCACCTGAATCAGTAATTTTAGGGAAATTGCGATGCATAATCATAACATTTTTGGTAAACAAGATCACACAAAAGAAAATCTACAGCCTGTGTCCTTGGCTAACAGTCTAACACACCCTGTCCAATATAACCTTCCAAAAATATAAATTATTCAAATATTTTTTTAATTTTTTTTTTCTTTTAAAAAAAAAGGTAGGCTTAGCTGGCGGTTGTCTATATATTAACAACCTTATTCAACGCCGCAGAATGATTGTCGGAGCAGCAAATTAAAAACCTTGGTTTTTGGTTTTCTATAAAAACTAGTTTGTTTTCACTTTTCTCGTTGCATTCTCCTTTTATTTTCTATATTTTTGATTTCCTATTAAGCCCTCCCTTTTCCTCTCTCTCTCCTAACAAGAGTTTTTGAATAAAGCTTTTGAAAGGAAGGAAGAGAAAGGGATAAAAGAGTAAAATCATAAATAGAAATGGGAAACTGCGCGAACAAGCCGTTGACAACAGAAGGAGATGCCCCCGCAGAGGCACCGGAGCAGAAGGTAGCCGTAGAGGAGAGAGAAATTGAAGTTGATCAAAACAAGGTTCCTTCTCTCGCTCAAATGTTGGAGGATGATGGAAAGAAGCCGGAAGCTGAGGGAGTCGCAAAGCCAGCCGAGGAGAAGAAGCCCTCAGAGACACCAATTAAGGTTGAAGAAGTAGCCAAAGAAGTGGCTGTCGAGACCAAGAAAGAAGATGTTTCAAAGCCGGCAGCCTCTGAGCCGCCTAAGCCAGAAGCCTCTGCGCCGAAGAAAGAAGAGACTAAGCCAGTTGTGGTTCCAGCCCCGGCTCCAGCCCCGGCTCCAGCCACAGCTGAGAAGAAAGTGGAAGAGAAGAAATCTGAGACTAAATGAAGATAATATTAAATGGTTATTCTTCTTTAAAACAAAAGAAAATTGAGGGGATAAAAAATAACACAAAAGAAATTTATTTTATTAATATAATTAAGTTTGTGATTGGATAGAATTATTTATTAATTGAAGAATTAGTTGATTTGGGATTTTGTTTAAATGGATATATATATATATATATATAATATATATATATATATATATATATATATATATATATATATATAATTGTATGGGGGGAGAGAGTGGGTTTCATGATTTGTGTTTTCGTAGATTGATTGTGTTTATGTATTTTTTCTTCTTTTGTGTTTTTGTTCTTTTGCTTTTGTAAACATCTGGGTTTTGTTGGATTGTTCAAACTTCAAATTAATATCGAATTGCTTTTATTAATTTAATTAATATTTTGTTGATTCAATCTTAAGGCCCTGTTCTTCTGAACTATGTTTGGCTGAACTGAACTGAATGGAACTAAATAAATAGTACATAAATAAATAATAAA

Coding sequence (CDS)

ATGGGAAACTGCGCGAACAAGCCGTTGACAACAGAAGGAGATGCCCCCGCAGAGGCACCGGAGCAGAAGGTAGCCGTAGAGGAGAGAGAAATTGAAGTTGATCAAAACAAGGTTCCTTCTCTCGCTCAAATGTTGGAGGATGATGGAAAGAAGCCGGAAGCTGAGGGAGTCGCAAAGCCAGCCGAGGAGAAGAAGCCCTCAGAGACACCAATTAAGGTTGAAGAAGTAGCCAAAGAAGTGGCTGTCGAGACCAAGAAAGAAGATGTTTCAAAGCCGGCAGCCTCTGAGCCGCCTAAGCCAGAAGCCTCTGCGCCGAAGAAAGAAGAGACTAAGCCAGTTGTGGTTCCAGCCCCGGCTCCAGCCCCGGCTCCAGCCACAGCTGAGAAGAAAGTGGAAGAGAAGAAATCTGAGACTAAATGA

Protein sequence

MGNCANKPLTTEGDAPAEAPEQKVAVEEREIEVDQNKVPSLAQMLEDDGKKPEAEGVAKPAEEKKPSETPIKVEEVAKEVAVETKKEDVSKPAASEPPKPEASAPKKEETKPVVVPAPAPAPAPATAEKKVEEKKSETK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo11751Spo11751gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo11751.1Spo11751.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11751.1.exon.1Spo11751.1.exon.1exon
Spo11751.1.exon.2Spo11751.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11751.1.utr5p.1Spo11751.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11751.1.CDS.1Spo11751.1.CDS.1CDS
Spo11751.1.CDS.2Spo11751.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11751.1.utr3p.1Spo11751.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo11751.1 vs. NCBI nr
Match: gi|731338361|ref|XP_010680287.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 130.2 bits (326), Expect = 2.800e-27
Identity = 94/160 (58.75%), Postives = 101/160 (63.12%), Query Frame = 1 

		  

Query: 1   MGNCANKPLTTEGDAPAEAPEQKVAVEEREIEVDQNKVP-----------SLAQMLEDDG 60
           MGNC  KPLTTE +    APEQK  VEEREIEVDQNKV            SLA+MLED+G
Sbjct: 1   MGNCGLKPLTTEAEE-VPAPEQKTTVEEREIEVDQNKVIDAVHHQSKAPLSLAEMLEDEG 60

Query: 61  KKPEAEGVAKPAEEKKPSETPIKVEEVAKEVAVETKKEDVSKPAASEPPKPEASAPKKEE 120
           KKPEAEG  KPAE  KP E P+K+EEVAKEVAVETKKE+  KP   EPPKPEASAPK  E
Sbjct: 61  KKPEAEGAEKPAEVAKPIE-PVKIEEVAKEVAVETKKEEAPKPVV-EPPKPEASAPKPAE 120

Query: 121 TKPVVV-------------------PAPAPAPAPATAEKK 131
           TKP V+                   PA  PA  P TAEKK
Sbjct: 121 TKPAVIAPAVEITKPAITPAVEITKPAVTPAAVPVTAEKK 157
[Close]
BLAST of Spo11751.1 vs. NCBI nr
Match: gi|731338363|ref|XP_010680288.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 119.8 bits (299), Expect = 3.800e-24
Identity = 87/149 (58.39%), Postives = 93/149 (62.42%), Query Frame = 1 

		  

Query: 1   MGNCANKPLTTEGDAPAEAPEQKVAVEEREIEVDQNKVPSLAQMLEDDGKKPEAEGVAKP 60
           MGNC  KPLTTE +    APEQK  VEEREIEVDQNK         D+GKKPEAEG  KP
Sbjct: 1   MGNCGLKPLTTEAEE-VPAPEQKTTVEEREIEVDQNK---------DEGKKPEAEGAEKP 60

Query: 61  AEEKKPSETPIKVEEVAKEVAVETKKEDVSKPAASEPPKPEASAPKKEETKPVVV----- 120
           AE  KP E P+K+EEVAKEVAVETKKE+  KP   EPPKPEASAPK  ETKP V+     
Sbjct: 61  AEVAKPIE-PVKIEEVAKEVAVETKKEEAPKPVV-EPPKPEASAPKPAETKPAVIAPAVE 120

Query: 121 --------------PAPAPAPAPATAEKK 131
                         PA  PA  P TAEKK
Sbjct: 121 ITKPAITPAVEITKPAVTPAAVPVTAEKK 137
[Close]
BLAST of Spo11751.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CB30_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g133290 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.000e-27
Identity = 94/160 (58.75%), Postives = 101/160 (63.12%), Query Frame = 1 

		  

Query: 1   MGNCANKPLTTEGDAPAEAPEQKVAVEEREIEVDQNKVP-----------SLAQMLEDDG 60
           MGNC  KPLTTE +    APEQK  VEEREIEVDQNKV            SLA+MLED+G
Sbjct: 1   MGNCGLKPLTTEAEE-VPAPEQKTTVEEREIEVDQNKVIDAVHHQSKAPLSLAEMLEDEG 60

Query: 61  KKPEAEGVAKPAEEKKPSETPIKVEEVAKEVAVETKKEDVSKPAASEPPKPEASAPKKEE 120
           KKPEAEG  KPAE  KP E P+K+EEVAKEVAVETKKE+  KP   EPPKPEASAPK  E
Sbjct: 61  KKPEAEGAEKPAEVAKPIE-PVKIEEVAKEVAVETKKEEAPKPVV-EPPKPEASAPKPAE 120

Query: 121 TKPVVV-------------------PAPAPAPAPATAEKK 131
           TKP V+                   PA  PA  P TAEKK
Sbjct: 121 TKPAVIAPAVEITKPAITPAVEITKPAVTPAAVPVTAEKK 157
[Close]
BLAST of Spo11751.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C6N2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g133290 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.700e-24
Identity = 87/149 (58.39%), Postives = 93/149 (62.42%), Query Frame = 1 

		  

Query: 1   MGNCANKPLTTEGDAPAEAPEQKVAVEEREIEVDQNKVPSLAQMLEDDGKKPEAEGVAKP 60
           MGNC  KPLTTE +    APEQK  VEEREIEVDQNK         D+GKKPEAEG  KP
Sbjct: 1   MGNCGLKPLTTEAEE-VPAPEQKTTVEEREIEVDQNK---------DEGKKPEAEGAEKP 60

Query: 61  AEEKKPSETPIKVEEVAKEVAVETKKEDVSKPAASEPPKPEASAPKKEETKPVVV----- 120
           AE  KP E P+K+EEVAKEVAVETKKE+  KP   EPPKPEASAPK  ETKP V+     
Sbjct: 61  AEVAKPIE-PVKIEEVAKEVAVETKKEEAPKPVV-EPPKPEASAPKPAETKPAVIAPAVE 120

Query: 121 --------------PAPAPAPAPATAEKK 131
                         PA  PA  P TAEKK
Sbjct: 121 ITKPAITPAVEITKPAVTPAAVPVTAEKK 137
The following BLAST results are available for this feature:
BLAST of Spo11751.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|731338361|ref|XP_010680287.1|2.8e-2758.7PREDICTED: pollen-specific leu... [more]
gi|731338363|ref|XP_010680288.1|3.8e-2458.3PREDICTED: pollen-specific leu... [more]
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BLAST of Spo11751.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0J8CB30_BETVU2.0e-2758.7Uncharacterized protein OS=Bet... [more]
A0A0J8C6N2_BETVU2.7e-2458.3Uncharacterized protein OS=Bet... [more]
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BLAST of Spo11751.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11751.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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