Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAAAAAATGAAAAACCTCTTTCACTTTTGGGCCAACAGAGAGCTAGAGAGAGAATGAAAATTTCATTTAAGCGCCATAAACAAAAGAGAGAAGAGTGGGGGGGAATTTCTAGCGCCATTGTCAATCGAAAGCTAAGAGACTGAAATTTTCATTTGCCCTTTAACCAATTCACAAAAATATTGAGCGCCATAACCAAATCACTGAAATTTTGAGCGCCATAAACGATGTTCCTGTCCCCTTCTGAAACCTCACTTTCTCCTTCTTCTTCATCTTCTACCTTTATTCTCTCTCCTACTTCGGTCGTCCGTGGTATCAACGATAACCCTTCTCTTCATGAGAATCCACCGGCGGAGATCCCCGATGATGTGAAGCCGTCGCTGGTTGTGGTGGACCTTCGCCATATCTGTCCCTCTTTGTCAATTTTGTTTATCAAATTTGTCATCCTTTCTTTTAATTATTGCTAGTTTAGATGATTTCACTCTCTTCAGAATCGATTTTATTATTTTCTTTGCTATTTTATTGAAATTTCAGCATGTCACTGATTTGTGTAGGAGAGAAACCCTTGTTCGTATTACAAGTGAAAACTCGTTTTTTCATTGTTGATTTTTTAGGTTTTTTTATGTGATACTCCGTACTATTTTCAGGGTTTATTGTGTTTTTGATGATATGTTGTTATAATTGATTGATTACAGTTTGCAAGTGATTTGGGTGTTTTTGATTGATCGATTTGATGCTTTACTCTTCACGTGAATTAAAATTTCCTCAATTATCGTATTTTATGGATTGATTTTGACCTTAGTAATTATATAATTTTCCTATAATCTGCTGAACATTAGTAGAACTGATTTTGGGAGAAATAAGATTAATATCAAATGAATTACATTGCATCATATCATAGAATTATGCCGTTTTATTTTACTTGCGTTGTTTGTTTGTAGTTGATGTTTAGTGCCTCTGGTACTTTAACTCGGTTATTTTTCCATCAGAGATGGTTGTAGTTGTAAGCTCTGTCGAAAAAATCCTTGTTTGTTTTGTTAGGCTTTTGATATCTTGAAACGTTTGTTTGCAGTTTCTTGCAGTTTCATTCCATTTACTTCCCTGTAAAATATACTGCTTACTACTATTGTATGAATTGAACTCTGTTCATTTTACAATTTTTTCCACTTCGGACCTCACACTTATTTCACCCCTTAGTAGAAAGTAACTCTCTTATATTATTTTATTGATGAGCTATCTGTGGAGTGTACAAATTCATTGAATTTTATGTGCAATACTCCTTTGCTGTTCAGCTTGTGTTAGTTCGCTTCTTCCCTTCCTGAGGTTAATGCCACTTCAAAGGAAGGATGGTTTGTAATGTAGAAAAATCGGCTGAGATAGTAAATGTTGATAATCTTCCAAGGAAAGGGAATACCAATAAGCGACCTAAATTAGTTCCTACAACAGATTTTCTCTTAGAGTCATTCTTCATGACTAACAGAAACGCAAGTTCAGCAAGAGAAGATGACCGGAGCGATTTGTATGATCTGTCTGTTTTTGAGATGCCCAAAAATAGAGTTGATATTGATCACATGAGTATGCTAATAGGGAATACATGTCTAAAGTTTGCACGGCGTTGCAAGAAAGTCAAATTGAAGAGGCCTCACCTGATGATGTGAAATGCCAAATGGCTGAAAGTACTTTTGAGATCTCAAGTTAGTTCCTCGAGTTTGTGTCTATTTTTCTTTCAGCATGGTTAAATAGATCCTTGGGAGGGTACCAAATTCTGCTCATCCAACAACCATAACAATCTAATATTCTAACATATACCACCACACTGTATTTCTACTTGGATCGGGTTGGATTGTTTGGTACCTCCCTGGAATTTTTGTGATATTCCTCTGGATATTCCTAGCTGAAGTTCAATTTGTGAATTTACATTGTTCTGTTTCTTCTCACTCATCTATAGTTTATTGGCATCTTTTACAGACGAAGCAGATTGGTCAAGAAAGGAATGTGTAGCTGTACCGCTACCCAACAATAGTAGGATAGACATGCCTTTGAACTTCAGTATGCCCCCGAGATTTCTCACATTTCCATATCTGAATGAGTTCTCAGCTCGTTCATCCCCCTGTGAGCCTCCTGGTACTCCCCGTACATATTCCTTTTCCCTATTAGATAAATTTTAACAGTAGATGGCATGAGTTGCATTCAAATATATATACATGTCTTCCTCTGAAATGCATGTTGACTTAGTTTATCTCTTGATCAGGCGAAAGAATGAGAATAGTCAAGCAAGAACTGCAACGCTGGTGAAATTATTTGTGATCTTAACGCTAATACTCTGGACTGCAGCCTCCAAAACCCATCTAACCTTCACCATTTGATGAACTAACCCAGAACCAAAGCTGCACTGAACAAAACCAAAACTCTAGGTTCTGATCAGTCTGCTACAAGACTGCGGGAAATCAGAAAATACATTCGAGCTAAACCAGGCACCCTTCAGGTCTGATCGGGTCTATAGATGAAGTGTAGCCCCATTAGTTGTGCTTGTTGGCTTGTAAATGTTTCTTTATTCCACGTCTTTTGATTTTTTTGTTTTCTTCTTATTTTCTTGTCTTTTTCTTGTTGTTTACCATTTCTCGAAAGTTTTAAGGCGGGTTCCAAAAATAGGTGTGTCTGGCATGTGGAACGGTTATTCCTTGGTGTTGCAGGTTTAATCTCATAAAACTTATGGTCAAGCATTACATTCCCTGCAC
mRNA sequence
GGAAAAAAAATGAAAAACCTCTTTCACTTTTGGGCCAACAGAGAGCTAGAGAGAGAATGAAAATTTCATTTAAGCGCCATAAACAAAAGAGAGAAGAGTGGGGGGGAATTTCTAGCGCCATTGTCAATCGAAAGCTAAGAGACTGAAATTTTCATTTGCCCTTTAACCAATTCACAAAAATATTGAGCGCCATAACCAAATCACTGAAATTTTGAGCGCCATAAACGATGTTCCTGTCCCCTTCTGAAACCTCACTTTCTCCTTCTTCTTCATCTTCTACCTTTATTCTCTCTCCTACTTCGGTCGTCCGTGGTATCAACGATAACCCTTCTCTTCATGAGAATCCACCGGCGGAGATCCCCGATGATGTGAAGCCGTCGCTGGTTGTGGTGGACCTTCGCCATATCTGTCCCTCTTTGTCAATTTTGTTTATCAAATTTGTCATCCTTTCTTTTAATTATTGCTAGTTTAGATGATTTCACTCTCTTCAGAATCGATTTTATTATTTTCTTTGCTATTTTATTGAAATTTCAGCATGTCACTGATTTGTGTAGGAGAGAAACCCTTGTTCGTATTACAAGTGAAAACTCGTTTTTTCATTGTTGATTTTTTAGGTTTTTTTATGTGATACTCCGTACTATTTTCAGGGTTTATTGTGTTTTTGATGATATGTTGTTATAATTGATTGATTACAGTTTGCAAGTGATTTGGGTGTTTTTGATTGATCGATTTGATGCTTTACTCTTCACGTGAATTAAAATTTCCTCAATTATCGTATTTTATGGATTGATTTTGACCTTAGTAATTATATAATTTTCCTATAATCTGCTGAACATTAGTAGAACTGATTTTGGGAGAAATAAGATTAATATCAAATGAATTACATTGCATCATATCATAGAATTATGCCGTTTTATTTTACTTGCGTTGTTTGTTTGTAGTTGATGTTTAGTGCCTCTGGTACTTTAACTCGGTTATTTTTCCATCAGAGATGGTTGTAGTTGTAAGCTCTGTCGAAAAAATCCTTGTTTGTTTTGTTAGGCTTTTGATATCTTGAAACGTTTGTTTGCAGTTTCTTGCAGTTTCATTCCATTTACTTCCCTGTAAAATATACTGCTTACTACTATTGTATGAATTGAACTCTGTTCATTTTACAATTTTTTCCACTTCGGACCTCACACTTATTTCACCCCTTAGTAGAAAGTAACTCTCTTATATTATTTTATTGATGAGCTATCTGTGGAGTGTACAAATTCATTGAATTTTATGTGCAATACTCCTTTGCTGTTCAGCTTGTGTTAGTTCGCTTCTTCCCTTCCTGAGGTTAATGCCACTTCAAAGGAAGGATGGTTTGTAATGTAGAAAAATCGGCTGAGATAGTAAATGTTGATAATCTTCCAAGGAAAGGGAATACCAATAAGCGACCTAAATTAGTTCCTACAACAGATTTTCTCTTAGAGTCATTCTTCATGACTAACAGAAACGCAAGTTCAGCAAGAGAAGATGACCGGAGCGATTTGTATGATCTGTCTGTTTTTGAGATGCCCAAAAATAGAGTTGATATTGATCACATGAGTATGCTAATAGGGAATACATGTCTAAAGTTTGCACGGCGTTGCAAGAAAGTCAAATTGAAGAGGCCTCACCTGATGATGTGAAATGCCAAATGGCTGAAAGTACTTTTGAGATCTCAAACGAAGCAGATTGGTCAAGAAAGGAATGTGTAGCTGTACCGCTACCCAACAATAGTAGGATAGACATGCCTTTGAACTTCAGTATGCCCCCGAGATTTCTCACATTTCCATATCTGAATGAGTTCTCAGCTCGTTCATCCCCCTGTGAGCCTCCTGGCGAAAGAATGAGAATAGTCAAGCAAGAACTGCAACGCTGGTGAAATTATTTGTGATCTTAACGCTAATACTCTGGACTGCAGCCTCCAAAACCCATCTAACCTTCACCATTTGATGAACTAACCCAGAACCAAAGCTGCACTGAACAAAACCAAAACTCTAGGTTCTGATCAGTCTGCTACAAGACTGCGGGAAATCAGAAAATACATTCGAGCTAAACCAGGCACCCTTCAGGTCTGATCGGGTCTATAGATGAAGTGTAGCCCCATTAGTTGTGCTTGTTGGCTTGTAAATGTTTCTTTATTCCACGTCTTTTGATTTTTTTGTTTTCTTCTTATTTTCTTGTCTTTTTCTTGTTGTTTACCATTTCTCGAAAGTTTTAAGGCGGGTTCCAAAAATAGGTGTGTCTGGCATGTGGAACGGTTATTCCTTGGTGTTGCAGGTTTAATCTCATAAAACTTATGGTCAAGCATTACATTCCCTGCAC
Coding sequence (CDS)
ATGTCTAAAGTTTGCACGGCGTTGCAAGAAAGTCAAATTGAAGAGGCCTCACCTGATGATGTGAAATGCCAAATGGCTGAAAGTACTTTTGAGATCTCAAACGAAGCAGATTGGTCAAGAAAGGAATGTGTAGCTGTACCGCTACCCAACAATAGTAGGATAGACATGCCTTTGAACTTCAGTATGCCCCCGAGATTTCTCACATTTCCATATCTGAATGAGTTCTCAGCTCGTTCATCCCCCTGTGAGCCTCCTGGCGAAAGAATGAGAATAGTCAAGCAAGAACTGCAACGCTGGTGA
Protein sequence
MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNFSMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Spo07319 | Spo07319 | gene |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo07319.1 | Spo07319.1-protein | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo07319.1.utr5p.1 | Spo07319.1.utr5p.1 | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo07319.1.CDS.3 | Spo07319.1.CDS.3 | CDS |
| Spo07319.1.CDS.2 | Spo07319.1.CDS.2 | CDS |
| Spo07319.1.CDS.1 | Spo07319.1.CDS.1 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo07319.1.utr3p.1 | Spo07319.1.utr3p.1 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Spo07319.1.exon.3 | Spo07319.1.exon.3 | exon |
| Spo07319.1.exon.2 | Spo07319.1.exon.2 | exon |
| Spo07319.1.exon.1 | Spo07319.1.exon.1 | exon |
Homology
BLAST of Spo07319.1 vs. NCBI nr
Match:
gi|902177634|gb|KNA08980.1| (hypothetical protein SOVF_157230 isoform A [Spinacia oleracea])
HSP 1 Score: 203.8 bits (517), Expect = 1.400e-49
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1
Query: 1 MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1 MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
Query: 61 SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
SMPPRFLTFPY NEFSARSSPCEPPGERMRIVKQELQRW
Sbjct: 61 SMPPRFLTFPYPNEFSARSSPCEPPGERMRIVKQELQRW 99
BLAST of Spo07319.1 vs. NCBI nr
Match:
gi|902177635|gb|KNA08981.1| (hypothetical protein SOVF_157230 isoform B [Spinacia oleracea])
HSP 1 Score: 188.3 bits (477), Expect = 6.200e-45
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 1
Query: 1 MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1 MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
Query: 61 SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
SMPPRFLTFPY NEFSARSSPC ERMRIVKQELQRW
Sbjct: 61 SMPPRFLTFPYPNEFSARSSPC----ERMRIVKQELQRW 95
BLAST of Spo07319.1 vs. NCBI nr
Match:
gi|902189577|gb|KNA11404.1| (hypothetical protein SOVF_135450 [Spinacia oleracea])
HSP 1 Score: 148.3 bits (373), Expect = 7.200e-33
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 1
Query: 2 SKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNFS 61
SKVCTALQE+QIEEASPD VK QM E+TFE+SNEADWSRKECV V LPNN R+DMPLNFS
Sbjct: 277 SKVCTALQETQIEEASPDVVKYQMTENTFELSNEADWSRKECVVVALPNN-RVDMPLNFS 336
Query: 62 MPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQ 98
MP LTFP NEFSA +SP EPPGERMRIVKQE Q
Sbjct: 337 MPLDSLTFPNPNEFSALASPFEPPGERMRIVKQEPQ 371
BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Match:
A0A0K9QP09_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157230 PE=4 SV=1)
HSP 1 Score: 203.8 bits (517), Expect = 1.000e-49
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1
Query: 1 MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1 MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
Query: 61 SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
SMPPRFLTFPY NEFSARSSPCEPPGERMRIVKQELQRW
Sbjct: 61 SMPPRFLTFPYPNEFSARSSPCEPPGERMRIVKQELQRW 99
BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Match:
A0A0K9QR18_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157230 PE=4 SV=1)
HSP 1 Score: 188.3 bits (477), Expect = 4.300e-45
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 1
Query: 1 MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1 MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
Query: 61 SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
SMPPRFLTFPY NEFSARSSPC ERMRIVKQELQRW
Sbjct: 61 SMPPRFLTFPYPNEFSARSSPC----ERMRIVKQELQRW 95
BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Match:
A0A0K9QVV9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135450 PE=4 SV=1)
HSP 1 Score: 148.3 bits (373), Expect = 5.000e-33
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 1
Query: 2 SKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNFS 61
SKVCTALQE+QIEEASPD VK QM E+TFE+SNEADWSRKECV V LPNN R+DMPLNFS
Sbjct: 277 SKVCTALQETQIEEASPDVVKYQMTENTFELSNEADWSRKECVVVALPNN-RVDMPLNFS 336
Query: 62 MPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQ 98
MP LTFP NEFSA +SP EPPGERMRIVKQE Q
Sbjct: 337 MPLDSLTFPNPNEFSALASPFEPPGERMRIVKQEPQ 371
The following BLAST results are available for this feature:
BLAST of Spo07319.1 vs. NCBI nr
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
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BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
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BLAST of Spo07319.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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BLAST of Spo07319.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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