Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGTGCACACGCCTGCACCATCCAAATTGCCACCATCACCAACCCCAAAAGAATCCTAAAATCGTATTGGATCCTATCCTAAATTCCTAATAGCATCACTAGATAAACAAGAAAGGAAATAAAAAAATGGAGCACCCCAAATAGTTGATTCGAAGGAGATAATTGGTCAACTCATTTATCAACACTTTGTTCTGTCCACCAAATTTATTCCATTTCTCTTACTAATTTTCTTCGATAGATTTAAATTCTACCTTTTATCATTCACTTCTTCATCGAATTCACCTTTTTGTGAAATCAATTTTACATAATTTCCAATGGCAGACCACCCAGCAGCAGCAGCATCAAAACCAGGAGATCATCACCCAAGTACGAATATTTGATTTTCTTTACATTCCATTTTTCATTTATTTTGGATTTTGTTTGTTTTGTTTATGGGGTTTGATTTTTGAATCCTGATTGGCTATGATTGGGGCTGTTTCGGATTTTTTGTGGCTTAATTTCTTGCGATGTTATATTTTTTGATGCTCTCTATTTTCATCCTAATTTAAAAATAATTAGGTTATCAATTATTGTGGGAATTCAATCACTGTATTTTTTACTCTATCAGATTAGGGTCTAGATAACTTCAAATGATATGAACTACGGAAATTAACCCAAATCAATTAGTTTGTATTAATATGATGTTAATTCCACAATAATTAATTGGTCATTCTTTTTGAATTTCCCCTCTTTCTTAGAAGCTTGAAGGAAGTTTTATAGATTGAAATATTGTTAAAGTGGAGTTCTCCAATTGAGGGGTAGAGGTAGTTACAGCCCCCAACTAGAAGCAAATAAGGTTTTTGTAACAATTACGCGTGGCAAAACAACTCCTACCCTATGTTACTCGGACATGGACATGGACATGGGTACGTGTCCAAGTGTCTGACTTGGCTATTTTGTGAAAAGGTTCCATGATTTTGGTCCAGAATGAAGTGATCGGCATCCGTAGCCATGTCCGAGTATTGAGGCATCCGACTCGGGTGCTTGAGGTAAAACGAAGAGTTCAAGTAACATAGCTCCTACCATGTCATAGTTAAGGATCCTTCCGAGTTTGGGGGACGGCCCTTGAAGAATTGTTACCCTATTTGGTTGCTAACTAATCAGCTGTTTTATTGGCCTCCTTGGATTAATGAGTCAACTGGATTTAGAGAATTAGCTCCAAGGCGGTTGTTATGAGCATTAAGCTAATGTCATTGCGGTAATACTTGGTTCGAGAACGTAGTGTTGCCATATATCATGTGCTTTTGTGATTCTATGATTTGGATGAATTCTGTCTTTAGTTCAATTTTGTACAAGTGCTCAAATAGAAGGTATTATGTTGATGAATGTTTGATTATAATTTGCTTTGTGGAATGTGGATTCAAGGTCATATGCAAATATGTGTCATAAAGAACTGTGTCTTACTCCTTCAGATGCTAGTAAAATTGAGTTTGGACAGGATATTTCTGTTTCTCTTTTAAATCACCTAGACTGTTTCCCTTCTTTCTACTTTACAAGGAATTCATATAGTATATGGAATTCCTCAGCTTCACAGTTCATGAAATACTATAGTATTCGGAATTCCTCAGTTTGGGTTACATCTTGAATCTTGATGCTGTATGGATATCAAGGACACTGGAATATTTTAATAGACTTCATGATCACGGACAACAATCACGGGTTTTCTGGATTTTATTTTGATGTTCTGGAATTGAACAATCCGAAGATCCGATAAGTATGAATAATTGTGCTGGTTTCAGATATAACTTTGCTTATTTCTGACAAAAGTTTGCTTATTTATGTCAGAAGAGGTGAAATCTCCCAAATTTATTGAAAAAACTAAGGAAGAGATTGAATCACTCTTTCATCATAAGTCACCAGAATCACCACATCATGATCGCCATCGCAAGGAAACTCATGGGACAAGTGAAGATATTGATGAAAGCACATCAGTTGATGAGATTAAAGCACCAAATTTATTTGAACGGATAAAGGAAGAAGTTGAAGCCATCGTTGGAGCAATGCATCAAAAGAAGGATTCAAAAGATGACAAATAAGAGAGTGCTATGAAGTGGCTGTCACAAGAATTTCAGTTTGATTTGATCCTCACTTCTCCCAGGATTCAGATTCATGGGATGAGTGTAAGTCCTTTTTTGAATCTTACTCGTATTTGTTAGACACAATTCAGCCACCAAGATTAATTACATTTGTTTATGTAAAATCCAATTGTTCTTCCGGAAATACAGAGGATGAATGTTACAAAGTTGTATGACATTTCAGTGTTGTGCTCATGTTATCATGTATCAACCTATTTTCTTATGAGATTTCAACTAGTTTTGTCATATAAATTGCAGAAAGAAATCTTGGATATCATTTTCCGCTGCCCCTTTTGTTGTTTCTTTTGTTTAATAGAAAATGTATTTTCTGGGTTAAAAGTTTAAGTGTAATTTGTACTAACAATGTGACAATTAAATCTAAACGGATGGTAGCGGACCTGCTTCCAAACAATAATTAGTCATGTACATGTTGGATGCTTCATTTGTCCTACATGTAGTTTCATAGTTTCCCCCCACCACAGAGCATACTCTTCCATAGTCAAACTGGATTTGTCAACTTGAAACATTAGTTAATCATATGTTTTCATCACTAACCTACTTTTTGTCTTCTTTAGTTTGAATGTTAATTTGTTTTACTACAACAATCTCCAG CGTGCACACGCCTGCACCATCCAAATTGCCACCATCACCAACCCCAAAAGAATCCTAAAATCGTATTGGATCCTATCCTAAATTCCTAATAGCATCACTAGATAAACAAGAAAGGAAATAAAAAAATGGAGCACCCCAAATAGTTGATTCGAAGGAGATAATTGGTCAACTCATTTATCAACACTTTGTTCTGTCCACCAAATTTATTCCATTTCTCTTACTAATTTTCTTCGATAGATTTAAATTCTACCTTTTATCATTCACTTCTTCATCGAATTCACCTTTTTGTGAAATCAATTTTACATAATTTCCAATGGCAGACCACCCAGCAGCAGCAGCATCAAAACCAGGAGATCATCACCCAAAAGAGGTGAAATCTCCCAAATTTATTGAAAAAACTAAGGAAGAGATTGAATCACTCTTTCATCATAAGTCACCAGAATCACCACATCATGATCGCCATCGCAAGGAAACTCATGGGACAAGTGAAGATATTGATGAAAGCACATCAGTTGATGAGATTAAAGCACCAAATTTATTTGAACGGATAAAGGAAGAAGTTGAAGCCATCGTTGGAGCAATGCATCAAAAGAAGGATTCAAAAGATGACAAATAAGAGAGTGCTATGAAGTGGCTGTCACAAGAATTTCAGTTTGATTTGATCCTCACTTCTCCCAGGATTCAGATTCATGGGATGAGTGTAAGTCCTTTTTTGAATCTTACTCGTATTTGTTAGACACAATTCAGCCACCAAGATTAATTACATTTGTTTATGTAAAATCCAATTGTTCTTCCGGAAATACAGAGGATGAATGTTACAAAGTTGTATGACATTTCAGTGTTGTGCTCATGTTATCATGTATCAACCTATTTTCTTATGAGATTTCAACTAGTTTTGTCATATAAATTGCAGAAAGAAATCTTGGATATCATTTTCCGCTGCCCCTTTTGTTGTTTCTTTTGTTTAATAGAAAATGTATTTTCTGGGTTAAAAGTTTAAGTGTAATTTGTACTAACAATGTGACAATTAAATCTAAACGGATGGTAGCGGACCTGCTTCCAAACAATAATTAGTCATGTACATGTTGGATGCTTCATTTGTCCTACATGTAGTTTCATAGTTTCCCCCCACCACAGAGCATACTCTTCCATAGTCAAACTGGATTTGTCAACTTGAAACATTAGTTAATCATATGTTTTCATCACTAACCTACTTTTTGTCTTCTTTAGTTTGAATGTTAATTTGTTTTACTACAACAATCTCCAG ATGGCAGACCACCCAGCAGCAGCAGCATCAAAACCAGGAGATCATCACCCAAAAGAGGTGAAATCTCCCAAATTTATTGAAAAAACTAAGGAAGAGATTGAATCACTCTTTCATCATAAGTCACCAGAATCACCACATCATGATCGCCATCGCAAGGAAACTCATGGGACAAGTGAAGATATTGATGAAAGCACATCAGTTGATGAGATTAAAGCACCAAATTTATTTGAACGGATAAAGGAAGAAGTTGAAGCCATCGTTGGAGCAATGCATCAAAAGAAGGATTCAAAAGATGACAAATAA MADHPAAAASKPGDHHPKEVKSPKFIEKTKEEIESLFHHKSPESPHHDRHRKETHGTSEDIDESTSVDEIKAPNLFERIKEEVEAIVGAMHQKKDSKDDK Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo01281.1 vs. NCBI nr
Match: gi|902203496|gb|KNA14575.1| (hypothetical protein SOVF_106240 isoform A [Spinacia oleracea]) HSP 1 Score: 191.8 bits (486), Expect = 5.700e-46 Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 1
BLAST of Spo01281.1 vs. NCBI nr
Match: gi|902203497|gb|KNA14576.1| (hypothetical protein SOVF_106240 isoform B [Spinacia oleracea]) HSP 1 Score: 185.7 bits (470), Expect = 4.100e-44 Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 1
BLAST of Spo01281.1 vs. NCBI nr
Match: gi|731348177|ref|XP_010685363.1| (PREDICTED: uncharacterized protein LOC104899793 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 122.9 bits (307), Expect = 3.300e-25 Identity = 65/93 (69.89%), Postives = 73/93 (78.49%), Query Frame = 1
BLAST of Spo01281.1 vs. NCBI nr
Match: gi|823248549|ref|XP_012456944.1| (PREDICTED: uncharacterized protein LOC105777955 [Gossypium raimondii]) HSP 1 Score: 100.9 bits (250), Expect = 1.300e-18 Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1
BLAST of Spo01281.1 vs. NCBI nr
Match: gi|728832201|gb|KHG11644.1| (epidermal patterning factor-like protein 3 [Gossypium arboreum]) HSP 1 Score: 100.9 bits (250), Expect = 1.300e-18 Identity = 52/80 (65.00%), Postives = 66/80 (82.50%), Query Frame = 1
BLAST of Spo01281.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4Z7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_106240 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 4.000e-46 Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 1
BLAST of Spo01281.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R501_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_106240 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 2.800e-44 Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 1
BLAST of Spo01281.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BTJ0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g170420 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 2.300e-25 Identity = 65/93 (69.89%), Postives = 73/93 (78.49%), Query Frame = 1
BLAST of Spo01281.1 vs. UniProtKB/TrEMBL
Match: A0A0B0NIL3_GOSAR (Epidermal patterning factor-like protein 3 OS=Gossypium arboreum GN=F383_16195 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 9.200e-19 Identity = 52/80 (65.00%), Postives = 66/80 (82.50%), Query Frame = 1
BLAST of Spo01281.1 vs. UniProtKB/TrEMBL
Match: A0A0D2T3C5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G063800 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 9.200e-19 Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1
BLAST of Spo01281.1 vs. TAIR (Arabidopsis)
Match: AT1G72690.1 (unknown protein) HSP 1 Score: 86.7 bits (213), Expect = 9.100e-18 Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 1
BLAST of Spo01281.1 vs. TAIR (Arabidopsis)
Match: AT5G57000.1 (unknown protein) HSP 1 Score: 79.0 bits (193), Expect = 1.900e-15 Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 1
BLAST of Spo01281.1 vs. TAIR (Arabidopsis)
Match: AT1G17490.1 (unknown protein) HSP 1 Score: 54.7 bits (130), Expect = 3.800e-8 Identity = 38/87 (43.68%), Postives = 48/87 (55.17%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01281.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01281.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01281.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo01281.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
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