Spo03757.1 (mRNA) | SpinachBase

Overview


Name	Spo03757.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr3 : 87891203 .. 87891651 (+)
Sequence length	370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAACAGTACAAGTACAACACTATATCAGGCTTCTTCTGCCAAAAAAAGTTTCTTCACACAAGTACAAAATTCATTCAAATGTCTTCTGCAACAGCGAACCCATCGCTCTCTTCTCCTGCACTTTCTCCTTCCTATTTCCCTTCCCATCACTCTCTCCTTCGCCGCCATTTTTCTCTCTCCGTTTCTTCGTTATCATCGAACAAGTTCACCGCTGGTCTCAGACTCGTCTCACTTTGCTGTCAATCTCCTAATCTTGGTGCCATTTCGACTGTTTCTGCCATGTCAGATTCTTCATCTTCGCCTTCACCTTCACCTTCGTCTGCCATTGATTTTCTGACATTGTGTCATAGCCTCAAGGTACTGATCCTACATTGCCTTTTTTGTTTCTTCCAATTTCACTTTTGTTTGCTTTCTGTTTATAAATTAATTGTTCTAGACCTATAATTAG

mRNA sequence

TCAACAGTACAAGTACAACACTATATCAGGCTTCTTCTGCCAAAAAAAGTTTCTTCACACAAGTACAAAATTCATTCAAATGTCTTCTGCAACAGCGAACCCATCGCTCTCTTCTCCTGCACTTTCTCCTTCCTATTTCCCTTCCCATCACTCTCTCCTTCGCCGCCATTTTTCTCTCTCCGTTTCTTCGTTATCATCGAACAAGTTCACCGCTGGTCTCAGACTCGTCTCACTTTGCTGTCAATCTCCTAATCTTGGTGCCATTTCGACTGTTTCTGCCATGTCAGATTCTTCATCTTCGCCTTCACCTTCACCTTCGTCTGCCATTGATTTTCTGACATTGTGTCATAGCCTCAAGACCTATAATTAG

Coding sequence (CDS)

ATGTCTTCTGCAACAGCGAACCCATCGCTCTCTTCTCCTGCACTTTCTCCTTCCTATTTCCCTTCCCATCACTCTCTCCTTCGCCGCCATTTTTCTCTCTCCGTTTCTTCGTTATCATCGAACAAGTTCACCGCTGGTCTCAGACTCGTCTCACTTTGCTGTCAATCTCCTAATCTTGGTGCCATTTCGACTGTTTCTGCCATGTCAGATTCTTCATCTTCGCCTTCACCTTCACCTTCGTCTGCCATTGATTTTCTGACATTGTGTCATAGCCTCAAGACCTATAATTAG

Protein sequence

MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLGAISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLKTYN

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo03757	Spo03757	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo03757.1	Spo03757.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03757.1.exon.1	Spo03757.1.exon.1	exon
Spo03757.1.exon.2	Spo03757.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03757.1.utr5p.1	Spo03757.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03757.1.CDS.1	Spo03757.1.CDS.1	CDS
Spo03757.1.CDS.2	Spo03757.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo03757.1 vs. NCBI nr
Match: gi|902187999|gb|KNA11037.1| (hypothetical protein SOVF_138840, partial [Spinacia oleracea])

HSP 1 Score: 171.4 bits (433), Expect = 7.700e-40
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

		  
Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG
Sbjct: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 94
          AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK
Sbjct: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 93

[Close]

BLAST of Spo03757.1 vs. NCBI nr
Match: gi|731340376|ref|XP_010681364.1| (PREDICTED: HD domain-containing protein 2 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 81.6 bits (200), Expect = 8.000e-13
Identity = 59/94 (62.77%), Postives = 61/94 (64.89%), Query Frame = 1

		  
Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          M S+T NPSLSSPA S       H  L    S S+SS SSN     LRLVS CCQSPNL 
Sbjct: 1  MWSSTTNPSLSSPASSFRRPHFCHPSLSISLSSSLSSFSSNNLIPTLRLVSFCCQSPNLT 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLKT 95
             TVSAMSD SSS S S SSAIDFLTLCH LKT
Sbjct: 61 TNLTVSAMSDPSSS-SSSSSSAIDFLTLCHRLKT 93

[Close]

BLAST of Spo03757.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUS0_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_138840 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.300e-40
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1

		  
Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG
Sbjct: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 94
          AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK
Sbjct: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLK 93

[Close]

BLAST of Spo03757.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EYU3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g140830 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.600e-13
Identity = 59/94 (62.77%), Postives = 61/94 (64.89%), Query Frame = 1

		  
Query: 1  MSSATANPSLSSPALSPSYFPSHHSLLRRHFSLSVSSLSSNKFTAGLRLVSLCCQSPNLG 60
          M S+T NPSLSSPA S       H  L    S S+SS SSN     LRLVS CCQSPNL 
Sbjct: 1  MWSSTTNPSLSSPASSFRRPHFCHPSLSISLSSSLSSFSSNNLIPTLRLVSFCCQSPNLT 60

Query: 61 AISTVSAMSDSSSSPSPSPSSAIDFLTLCHSLKT 95
             TVSAMSD SSS S S SSAIDFLTLCH LKT
Sbjct: 61 TNLTVSAMSDPSSS-SSSSSSAIDFLTLCHRLKT 93

The following BLAST results are available for this feature:

BLAST of Spo03757.1 vs. NCBI nr
BLAST of Spo03757.1 vs. UniProtKB/TrEMBL
BLAST of Spo03757.1 vs. ExPASy Swiss-Prot
BLAST of Spo03757.1 vs. TAIR (Arabidopsis)

BLAST of Spo03757.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902187999\|gb\|KNA11037.1\|	7.7e-40	100.	hypothetical protein SOVF_1388...	[more]
gi\|731340376\|ref\|XP_010681364.1\|	8.0e-13	62.7	PREDICTED: HD domain-containin...	[more]

BLAST of Spo03757.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QUS0_SPIOL	5.3e-40	100.	Uncharacterized protein (Fragm...	[more]
A0A0J8EYU3_BETVU	5.6e-13	62.7	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo03757.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo03757.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description