Spo27101.1 (mRNA) | SpinachBase

Overview


Name	Spo27101.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Transcription initiation factor TFIID subunit 9
Location	chr4 : 10713842 .. 10718620 (-)
Sequence length	1413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGTCATTCGCAAAAGGGAAAAGAAGGAAAAAGAAAAAAGCTTTTCTAGTGTCAATCATGTCCGAATCACGTGACTTTAATTCAATAGTTCCACTTTCACCGCCATCGTTGGCATCGTTCCCCGTTTGTTTGCTTTCTTCTGCTCAAATTTAGTGCAATTTGAAGACTCCTCCCATCTTTCTCCCATTGAATTTGAGTAAATTGCTGCAATTTCAAGACTCTTCCCGCTAATTCTCAAGCATTCAAGATCAGGTAACTCGAAATTTTATTTGATTCAATTTCGGATTATAATTTTAGGGTTTAAAATTAAGTTTAGGGTTTATTGGGGGGTTTTCGGGTTGCTATTGTCTTATGGGTTTATGTTGCTAAAATTGCAGCATATATCAAAACAATTTGAATAATTGAATTTTGCCCAAACATTGTATGTCATTGATTATGTACAGTATGCCAATTTTATTGATGTTTTTCGGAACATGTTTTCATGATGAATTCAAGGTTCAAGTTAGTTTGATGAACATTGCAAATGTCCTATTTCAGGAATTCAGTTGTTCTTATCCTTCGTGCAATTAAAATTTTCGAATTGGGTAGAGAAATTATTATCTTATGCTGGGAGAATATGCTATTTGGTTCGAAGTCGCGATCTATTTGATGTTGTTATTTTGTAGGAGGGAATTTTTTTACTGTCTTTTACTTGATTCTGTGTCATTGGAGTGTAGAATCAGCGATAAATCAAGAGGTTTACATTATGAGAATTGGGTAAGTAGTTGTTGAAGGAAATTTTTATGGTGATGAAAAGGATTTTATAGGAGTTAGGTTTGATGCTATGTGCGGATTTTCAGCTAAAAATCCGATCGCTGCTGCAGTGCTGCTGCCAAATAAAAACCCCTTTCTACCTCGAGTTTGCTTATCTCCTTTTGTTGTGTGTCAGATTCCACACGACCTCCCAACTGGGTTTTGGTGACAATGTGACATCTGTGGTGTTGATTGAGATAATTTTGGAGAAGTCTATTGTAGAGATTTCACTTTCCAATTTCTCCACCAGTAAGTGGAGTTGATAGTAGCTTTGCAGAATCTTCGGGATGCATCATTACGTATTTCTAAGTGGTAGCTATAAAGGAATGGAGTTTCGCAAATGCAAAAAGCACTAGACAGCCGAACTTAGGCTGTATTTAGTGACTTGTGTGTGTGTATCTTCCAGAGTTACCTGGTTCGTGGTTCGCTTTGGTACGGGGTACGAGTTCGGGTTCGCGGTTCGCGGGTAGCTGATTTTAGGTTCGCGGGTAGCGGTATGGATTATTTTATTTTATTTTAAATTCAAATTAACAAATAAAAAGCAACCACCATCTTCATTCTTCGGCAGTTCGGCTTTCCAGTTCTTCACCTCGACCTCATCCATGGCTATTATTTTCAGCAAGACGAAAGAACAACAAAAACAACAATTGACGGTAGGAATCAACACATATGTAATTCTCAAACAAAAGCCCCAACATATTTTATCTTCTATCGCTTTCCCGGACTTTCAATCGTTAAAACTAGGGTTTTGGTTTGGTTCGTGAAAAGTCGCGAATTGGATCGCCGGAGAACCACGAATTGGTACAGGCGAACCAGTTCGCGGTTCGCGGGAGTTAGGGGCGAACTAGGTAACACTGGTATCTTCTGATATATGGAAACATCACATTCATTGTTAATGAGTTCACAGATTTTATAGCTGATACAGTAGGGTTCATCATTATCATTATCATTACCCCATTGTCTCAAAGAAGCTCCCGCAAGAAGCGGGGTAAGGGGGGGTCGGGTGTACGCAACCTTACTTCTGCAATTGCAGAAAGGTTGTTTCCAATTGACTCAAAAGCGATAACGGGACGACCATCTTCTACTTCATGGAAAGGAAGCGAAGAGGTTTTAAGAGCCATTTTGATTTAGTCCATTACATCCCACAGCCAAAAGAACAAATGAATCTTTGGCTCTATCGGAAATGGACATATATCAGTACAGTTGATATAGTAGGGTTAGTTTTTAATTTTTCTGGGGATGGATTATTAGGAGTATGTGATTCTAAATACGAAGTATGAAGTAGCATTTGCATGATTTTGATTTTGGTGTCGGTGGTGGTGGTGTGTGTGTAGGGGGAGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGTTCTGTAGTTTTTCTGTCACTGACTTTCAGTTGAGCCTTAAGCAAAGCTTCTGAGTGCTCAGAAGCATACCAAAGGTAGAGCTATGGATTCGTATATCAGTGGTATCTGATATGGGGGGAAGATGGCGTCTTGCTACTGTTTACTTGGTTGGACACTCTTATCTAGAGGGTGCAGTCTGGTGAGTAGTTGGGACTAGCATCAGCTTTGTAATTAGTAGAGAAAACAACTTTAGTTAATTATGATGGTTATTCAGAGAAATGTTGTATTGTGTAGTTACAACCCTGAAGCCTACTGTAATTAATCCTTAATTTCGCTCAGAATGTCGTCCTGTACTTTAACTGCAGCTCTGCTGCTTTCCTCCATTTCTGAGTTCTAGTCTGTTTTTTTTTGGGTGGAAGCTTACCATGATGCTGAGTTGTTATCCCGAAGCTGCAATCTTGCATGTTTTTCCCACTTTCTTTCAACTCAGTTTTCTTGGTTGAATCTCAATTCTCACTTTCTCAGTTCTAAATTTTGGGTGGTTATTGCAGTTTGAAAAATTATGGCTGAAGGAGAGGAAGACTTGCCAAGGGATGCAAAGATTGTGAAGTCGTTATTAAAATCTATGGGTGTTGAGGAGCATGAGCCCCGTGTTGTGCACCAGTTTCTGGAGTTATGGTATAGGTATGTCGTCGATGTGTTGACGGATGCACAAGTTTACTCAGAACATGCAGGCAAAGGCACAATTGACTGTGATGATGTTAAGCTTGCTATCCAATCAAAAGTGAATTTCAGCTTCTCACAACCACCACCCCGGGAGGTACTTTAGCTTTCTATTTACCACTTCTTTCTGTAAATAAATAAAACTATGTTTCCATGTGCATTTTATTGGAATTGCTCTTGTCATGATCTCATTTTCCTTATCGGGATACGAATGCCCCCTTTCTTTAAATTGGCTGATATCTCAAATCCCTACTTGTATGATGGACTAGTAGAACCGTCTTAATCTGGAGAAAAGCTGGGGCAGGATAGAATTAATTATTAAGAAAGGAACAGCACATCGTTTTATTTGTTGTCAGTGTTGATGCATTATTCAAGAACTTAGTGCTCCTTTGGTTCACTTGGGTAGTAACTTCCCATGGGAAGTTCCAATTCATAGGAAGTTAATTCCCTTGTTACTTTCCTAGGAAATAGATTGATTACGTTTGGTTGAACTTGGGAATTCATAATTGATGGGAATTGACATGGGAAGTATGACTTACCAAGGAGAGGGTAGGTAAGCCACTTCCCATGTTCATAGGAATTTCAAACTTCCCAATATAGTTCTAATTCCCCCATTACTCCCATTTCATGCCAACCAAACAAGTAGCTATATACTCCCTCCGTCCCTAAAATATTACCCCAAATGCTTTAGTTCACTTTATTAAGAATTGGTTATAGCCAAAAGCAAAGAGTTAGGTAAATTTATCTTTTTGTTAGATTTAGGGTATATGGGGCAATCTTTTAGGGACGGAGGGAGTATACACTTCCTAGGAACTCACGCTTCCCCCTCTATTTACATGCAACCAAACATCCCCTTAGTGTGAAATTTTTGCGTTCCTATGTCTCAGCTTCTACTGTAGAGATTTTACCAAAAGAATGCTGCAAATCGTTCTTTTTATTTTTCCTGTTATTTGGGTTTTTTGAGGTCATATAGTGGTGAATGATAAAGTTTTAGCAATTTTACTATTGGACCAGGTATTATTAGAGCTTGCTAGAAACAGGAACAAAACCCCGTTACCAAAGAATGTCGGAGGCTCTGGAGTTCCTCTTCCACCCGAAGAGTACACACTGATTAGCCCTAATTACCAGCTAATGACATCAAAGAGACAATCCGCCCAGGCATTTGAAGAACCAGAAGAAGAAGATGATGAAGAAGAAGAAGAAGAGGCCGCTGTTCCTAGCTCCTCTCAAGAACCAAAGAACGATACAATGCAGACCACTCCGCAACGGGTCTCTTTTCCTCTTGCAGCTAAGCGTCCGAAATGCTAATTTGACAACAACCTACATTTGTGTCAGGTTAGATCTTCCAAAACTGACAATTGCCTGTTTCTTAATTACAAATCATACTATAGCGAATTGTCAGATTAATTTGTAAGCATCTGAATTCGTGACCCTAATCTTGCTGTATCTGAATATTGGTAATACTGTCTTATTTTAACAGTAAAGGAGAAGTGATTTTAAGTTTATGTACATTACACTCTATCTGGACCCTGGAGGTGATGTGTTTATAAACACATCTCACAGGGGTATGATGGTAATTTCGCACCACATAAACACGCCATTGTTCACATAAACACACCATCATTTTTATTTTTTATACCATTGTTTTCATAGTCTATACCATTTTTGATATCATTGAAAGTTCAATGTATTTACAAAATTGCCATGTTATGTGTTTGACAATACATAACTATTATGGGTTTTTACTTCCTCCTCTGTAGTGTGCCTTTACCTGTGTTAATTTCTGAAAAATCTTCATATCAACTACTACATCAATAATTGACAATATAATCTTGGATATTTATTTTAGAAAATGGTTTGAGATACGTATTTGCTTACATTTGCTTACAACTACCAATATTAGAC

mRNA sequence

TGAGTCATTCGCAAAAGGGAAAAGAAGGAAAAAGAAAAAAGCTTTTCTAGTGTCAATCATGTCCGAATCACGTGACTTTAATTCAATAGTTCCACTTTCACCGCCATCGTTGGCATCGTTCCCCGTTTGTTTGCTTTCTTCTGCTCAAATTTAGTGCAATTTGAAGACTCCTCCCATCTTTCTCCCATTGAATTTGAGTAAATTGCTGCAATTTCAAGACTCTTCCCGCTAATTCTCAAGCATTCAAGATCAGTTTGAAAAATTATGGCTGAAGGAGAGGAAGACTTGCCAAGGGATGCAAAGATTGTGAAGTCGTTATTAAAATCTATGGGTGTTGAGGAGCATGAGCCCCGTGTTGTGCACCAGTTTCTGGAGTTATGGTATAGGTATGTCGTCGATGTGTTGACGGATGCACAAGTTTACTCAGAACATGCAGGCAAAGGCACAATTGACTGTGATGATGTTAAGCTTGCTATCCAATCAAAAGTGAATTTCAGCTTCTCACAACCACCACCCCGGGAGGTATTATTAGAGCTTGCTAGAAACAGGAACAAAACCCCGTTACCAAAGAATGTCGGAGGCTCTGGAGTTCCTCTTCCACCCGAAGAGTACACACTGATTAGCCCTAATTACCAGCTAATGACATCAAAGAGACAATCCGCCCAGGCATTTGAAGAACCAGAAGAAGAAGATGATGAAGAAGAAGAAGAAGAGGCCGCTGTTCCTAGCTCCTCTCAAGAACCAAAGAACGATACAATGCAGACCACTCCGCAACGGGTCTCTTTTCCTCTTGCAGCTAAGCGTCCGAAATGCTAATTTGACAACAACCTACATTTGTGTCAGGTTAGATCTTCCAAAACTGACAATTGCCTGTTTCTTAATTACAAATCATACTATAGCGAATTGTCAGATTAATTTGTAAGCATCTGAATTCGTGACCCTAATCTTGCTGTATCTGAATATTGGTAATACTGTCTTATTTTAACAGTAAAGGAGAAGTGATTTTAAGTTTATGTACATTACACTCTATCTGGACCCTGGAGGTGATGTGTTTATAAACACATCTCACAGGGGTATGATGGTAATTTCGCACCACATAAACACGCCATTGTTCACATAAACACACCATCATTTTTATTTTTTATACCATTGTTTTCATAGTCTATACCATTTTTGATATCATTGAAAGTTCAATGTATTTACAAAATTGCCATGTTATGTGTTTGACAATACATAACTATTATGGGTTTTTACTTCCTCCTCTGTAGTGTGCCTTTACCTGTGTTAATTTCTGAAAAATCTTCATATCAACTACTACATCAATAATTGACAATATAATCTTGGATATTTATTTTAGAAAATGGTTTGAGATACGTATTTGCTTACATTTGCTTACAACTACCAATATTAGAC

Coding sequence (CDS)

ATGGCTGAAGGAGAGGAAGACTTGCCAAGGGATGCAAAGATTGTGAAGTCGTTATTAAAATCTATGGGTGTTGAGGAGCATGAGCCCCGTGTTGTGCACCAGTTTCTGGAGTTATGGTATAGGTATGTCGTCGATGTGTTGACGGATGCACAAGTTTACTCAGAACATGCAGGCAAAGGCACAATTGACTGTGATGATGTTAAGCTTGCTATCCAATCAAAAGTGAATTTCAGCTTCTCACAACCACCACCCCGGGAGGTATTATTAGAGCTTGCTAGAAACAGGAACAAAACCCCGTTACCAAAGAATGTCGGAGGCTCTGGAGTTCCTCTTCCACCCGAAGAGTACACACTGATTAGCCCTAATTACCAGCTAATGACATCAAAGAGACAATCCGCCCAGGCATTTGAAGAACCAGAAGAAGAAGATGATGAAGAAGAAGAAGAAGAGGCCGCTGTTCCTAGCTCCTCTCAAGAACCAAAGAACGATACAATGCAGACCACTCCGCAACGGGTCTCTTTTCCTCTTGCAGCTAAGCGTCCGAAATGCTAA

Protein sequence

MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKGTIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLISPNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKRPKC

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo27101	Spo27101	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo27101.1	Spo27101.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27101.1.utr5p.2	Spo27101.1.utr5p.2	five_prime_UTR
Spo27101.1.utr5p.1	Spo27101.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27101.1.CDS.2	Spo27101.1.CDS.2	CDS
Spo27101.1.CDS.1	Spo27101.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27101.1.utr3p.1	Spo27101.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27101.1.exon.3	Spo27101.1.exon.3	exon
Spo27101.1.exon.2	Spo27101.1.exon.2	exon
Spo27101.1.exon.1	Spo27101.1.exon.1	exon

Homology

[Close]

BLAST of Spo27101.1 vs. NCBI nr
Match: gi|902164056|gb|KNA06924.1| (hypothetical protein SOVF_176640 [Spinacia oleracea])

HSP 1 Score: 352.1 bits (902), Expect = 6.000e-94
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 1

		  
Query: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60
           MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG
Sbjct: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60

Query: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120
           TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS
Sbjct: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120

Query: 121 PNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180
           PNYQLMTSKRQSAQAFEEPEEEDD EEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR
Sbjct: 121 PNYQLMTSKRQSAQAFEEPEEEDD-EEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180

Query: 181 PKC 184
           PKC
Sbjct: 181 PKC 182

[Close]

BLAST of Spo27101.1 vs. NCBI nr
Match: gi|731327694|ref|XP_010674656.1| (PREDICTED: transcription initiation factor TFIID subunit 9 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 295.8 bits (756), Expect = 5.100e-77
Identity = 152/182 (83.52%), Postives = 160/182 (87.91%), Query Frame = 1

		  
Query: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60
           MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRY VDVLTDAQVYSEHAGK 
Sbjct: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYAVDVLTDAQVYSEHAGKA 60

Query: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120
           TIDCDD+KLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSG+PLPPEE TLIS
Sbjct: 61  TIDCDDIKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGIPLPPEEDTLIS 120

Query: 121 PNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180
           PNYQL+  K+Q+ Q  EE +E       EE A PSSSQEPK + +Q TPQRVSFPL AKR
Sbjct: 121 PNYQLVIPKKQNPQTLEETDE-------EETAAPSSSQEPKIEGLQNTPQRVSFPLGAKR 175

Query: 181 PK 183
           PK
Sbjct: 181 PK 175

[Close]

BLAST of Spo27101.1 vs. NCBI nr
Match: gi|1000960724|ref|XP_015576093.1| (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X1 [Ricinus communis])

HSP 1 Score: 274.2 bits (700), Expect = 1.600e-70
Identity = 144/182 (79.12%), Postives = 157/182 (86.26%), Query Frame = 1

		  
Query: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60
           MAEG+E+LPRDAKIVKSLLKSMGVE++EPRV+HQFLELWYRYVVDVLTDAQVYSEHAGK 
Sbjct: 1   MAEGDENLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKS 60

Query: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120
            IDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNK PLPK++ G G+PLPPE+ TLIS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGPGMPLPPEQDTLIS 120

Query: 121 PNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180
           PNYQL   K+QS QA EE EE+      EE+A P+SSQEPK D  Q TPQRVSFPL  KR
Sbjct: 121 PNYQLAIPKKQSVQATEETEED------EESADPNSSQEPKTDVPQGTPQRVSFPL-TKR 175

Query: 181 PK 183
           PK
Sbjct: 181 PK 175

[Close]

BLAST of Spo27101.1 vs. NCBI nr
Match: gi|1000960730|ref|XP_002521322.2| (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Ricinus communis])

HSP 1 Score: 274.2 bits (700), Expect = 1.600e-70
Identity = 144/182 (79.12%), Postives = 157/182 (86.26%), Query Frame = 1

		  
Query: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60
           MAEG+E+LPRDAKIVKSLLKSMGVE++EPRV+HQFLELWYRYVVDVLTDAQVYSEHAGK 
Sbjct: 10  MAEGDENLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKS 69

Query: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120
            IDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNK PLPK++ G G+PLPPE+ TLIS
Sbjct: 70  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGPGMPLPPEQDTLIS 129

Query: 121 PNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180
           PNYQL   K+QS QA EE EE+      EE+A P+SSQEPK D  Q TPQRVSFPL  KR
Sbjct: 130 PNYQLAIPKKQSVQATEETEED------EESADPNSSQEPKTDVPQGTPQRVSFPL-TKR 184

Query: 181 PK 183
           PK
Sbjct: 190 PK 184

[Close]

BLAST of Spo27101.1 vs. NCBI nr
Match: gi|743878736|ref|XP_011035723.1| (PREDICTED: transcription initiation factor TFIID subunit 9 [Populus euphratica])

HSP 1 Score: 269.6 bits (688), Expect = 3.900e-69
Identity = 142/182 (78.02%), Postives = 155/182 (85.16%), Query Frame = 1

		  
Query: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60
           MAEGEED+PRDAKIVKSLLKSMGVE++EPRVVHQFLELWYRYVVDVLTDAQVYSEHA K 
Sbjct: 1   MAEGEEDMPRDAKIVKSLLKSMGVEDYEPRVVHQFLELWYRYVVDVLTDAQVYSEHANKT 60

Query: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120
            IDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNK PLPK++ G G+PLPPE+ TLIS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGPGIPLPPEQDTLIS 120

Query: 121 PNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180
           PNYQL   K+++AQA EE EE+      EE+A P+ SQE K D  Q TPQRVSFPL  KR
Sbjct: 121 PNYQLAIPKKRTAQAIEETEED------EESADPNQSQEQKTDPPQLTPQRVSFPL-TKR 175

Query: 181 PK 183
           PK
Sbjct: 181 PK 175

[Close]

BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QI52_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_176640 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 4.200e-94
Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 1

		  
Query: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60
           MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG
Sbjct: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60

Query: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120
           TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS
Sbjct: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120

Query: 121 PNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180
           PNYQLMTSKRQSAQAFEEPEEEDD EEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR
Sbjct: 121 PNYQLMTSKRQSAQAFEEPEEEDD-EEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180

Query: 181 PKC 184
           PKC
Sbjct: 181 PKC 182

[Close]

BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNR2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g080560 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.600e-77
Identity = 152/182 (83.52%), Postives = 160/182 (87.91%), Query Frame = 1

		  
Query: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60
           MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRY VDVLTDAQVYSEHAGK 
Sbjct: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYAVDVLTDAQVYSEHAGKA 60

Query: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120
           TIDCDD+KLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSG+PLPPEE TLIS
Sbjct: 61  TIDCDDIKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGIPLPPEEDTLIS 120

Query: 121 PNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180
           PNYQL+  K+Q+ Q  EE +E       EE A PSSSQEPK + +Q TPQRVSFPL AKR
Sbjct: 121 PNYQLVIPKKQNPQTLEETDE-------EETAAPSSSQEPKIEGLQNTPQRVSFPLGAKR 175

Query: 181 PK 183
           PK
Sbjct: 181 PK 175

[Close]

BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Match: B9S5Q3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0652310 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.100e-70
Identity = 144/182 (79.12%), Postives = 157/182 (86.26%), Query Frame = 1

		  
Query: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60
           MAEG+E+LPRDAKIVKSLLKSMGVE++EPRV+HQFLELWYRYVVDVLTDAQVYSEHAGK 
Sbjct: 1   MAEGDENLPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKS 60

Query: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120
            IDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNK PLPK++ G G+PLPPE+ TLIS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGPGMPLPPEQDTLIS 120

Query: 121 PNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180
           PNYQL   K+QS QA EE EE+      EE+A P+SSQEPK D  Q TPQRVSFPL  KR
Sbjct: 121 PNYQLAIPKKQSVQATEETEED------EESADPNSSQEPKTDVPQGTPQRVSFPL-TKR 175

Query: 181 PK 183
           PK
Sbjct: 181 PK 175

[Close]

BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Match: B9GKT8_POPTR (TATA BINDING protein ASSOCIATED FACTOR 21KDA SUBUNIT OS=Populus trichocarpa GN=POPTR_0001s16840g PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.700e-69
Identity = 141/182 (77.47%), Postives = 155/182 (85.16%), Query Frame = 1

		  
Query: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60
           MAEGEED+PRDAKIVKSLLKSMGVE++EPRVVHQFLELWYRYVVDVLTDAQVYSEHA K 
Sbjct: 1   MAEGEEDMPRDAKIVKSLLKSMGVEDYEPRVVHQFLELWYRYVVDVLTDAQVYSEHANKT 60

Query: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120
            IDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNK PLPK++ G G+PLPPE+ TLIS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGPGIPLPPEQDTLIS 120

Query: 121 PNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180
           PNYQL   K+++AQA EE EE++D      +A P+ SQE K D  Q TPQRVSFPL  KR
Sbjct: 121 PNYQLAIPKKRTAQAIEETEEDED------SADPNQSQEQKTDPPQLTPQRVSFPL-TKR 175

Query: 181 PK 183
           PK
Sbjct: 181 PK 175

[Close]

BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Match: A9PCE8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.700e-69
Identity = 142/182 (78.02%), Postives = 155/182 (85.16%), Query Frame = 1

		  
Query: 1   MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKG 60
           MAEGEED+PRDAKIVKSLLKSMGVE++EPRVVHQFLELWYRYVVDVLTDAQVYSEHA K 
Sbjct: 1   MAEGEEDMPRDAKIVKSLLKSMGVEDYEPRVVHQFLELWYRYVVDVLTDAQVYSEHANKT 60

Query: 61  TIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLIS 120
            IDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNK PLPK++ G G+PLPPE+ TLIS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGPGIPLPPEQDTLIS 120

Query: 121 PNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKR 180
           PNYQL   K+++AQA EE EE+      EE+A P+ SQE K D  Q TPQRVSFPL  KR
Sbjct: 121 PNYQLAIPKKRTAQAIEETEED------EESADPNQSQEQKTDPPQLTPQRVSFPL-TKR 175

Query: 181 PK 183
           PK
Sbjct: 181 PK 175

[Close]

BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Match: TAF9_ARATH (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana GN=TAF9 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.100e-62
Identity = 131/186 (70.43%), Postives = 150/186 (80.65%), Query Frame = 1

		  
Query: 3   EGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKGTI 62
           EGEED+PRDAKIVKSLLKSMGVE++EPRV+HQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 63  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLISPN 122
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNK PLPK++ G GVPLPPE+ TL+SPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 123 YQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQT------TPQRVSFPL 182
           YQL+  K+  +    EPEE +D+EE  +     SSQE +    QT      TPQRVSFPL
Sbjct: 124 YQLVIPKKSVS---TEPEETEDDEEMTDPG--QSSQEQQQQQQQTSDLPSQTPQRVSFPL 183

[Close]

BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Match: TAF9_BOVIN (Transcription initiation factor TFIID subunit 9 OS=Bos taurus GN=TAF9 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.900e-32
Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 1

		  
Query: 6   EDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKGTIDCD 65
           + +P+DA+++  +LK MG+ E+EPRV++Q LE  +RYV  +L DA++YS HA K T+D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLISPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+TPLP     SG  LPP+ Y L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 126 MT-SKRQSAQA 136
            +  K+ SA A
Sbjct: 130 KSLQKKASASA 140

[Close]

BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Match: TAF9B_MOUSE (Transcription initiation factor TFIID subunit 9B OS=Mus musculus GN=Taf9b PE=1 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 9.500e-31
Identity = 61/120 (50.83%), Postives = 88/120 (73.33%), Query Frame = 1

		  
Query: 6   EDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKGTIDCD 65
           ++ PRDA ++  +LK MG+ E+EPRV++Q LE  +RYV  +L DA++YS HA K T+D D
Sbjct: 10  KNAPRDALVMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLISPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR +N+TPLP     +G  LPP+ Y L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129

[Close]

BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Match: TAF9_RAT (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus GN=Taf9 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.600e-30
Identity = 74/172 (43.02%), Postives = 109/172 (63.37%), Query Frame = 1

		  
Query: 6   EDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKGTIDCD 65
           + +P+DA+++  +LK MG+ E+EPRV++Q LE  +RYV  +L DA++YS HA K T+D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLISPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+TPLP     SG  LPP+ Y L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 126 MTSKRQS---AQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQT-TPQRVS 174
            + ++++   A     P            +V S S  P   T+ T TPQ +S
Sbjct: 130 KSLQKKAPTPAGRITVP----------RLSVGSVSSRPSTPTLGTPTPQAMS 171

[Close]

BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Match: TAF9B_RAT (Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus GN=Taf9b PE=2 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 2.100e-30
Identity = 60/120 (50.00%), Postives = 88/120 (73.33%), Query Frame = 1

		  
Query: 6   EDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKGTIDCD 65
           ++ PRDA ++  +LK MG+ ++EPRV++Q LE  +RYV  +L DA++YS HA K T+D D
Sbjct: 10  KNAPRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLISPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR +N+TPLP     +G  LPP+ Y L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129

[Close]

BLAST of Spo27101.1 vs. TAIR (Arabidopsis)
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit)

HSP 1 Score: 238.4 bits (607), Expect = 3.400e-63
Identity = 131/186 (70.43%), Postives = 150/186 (80.65%), Query Frame = 1

		  
Query: 3   EGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKGTI 62
           EGEED+PRDAKIVKSLLKSMGVE++EPRV+HQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 63  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLISPN 122
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNK PLPK++ G GVPLPPE+ TL+SPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 123 YQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQT------TPQRVSFPL 182
           YQL+  K+  +    EPEE +D+EE  +     SSQE +    QT      TPQRVSFPL
Sbjct: 124 YQLVIPKKSVS---TEPEETEDDEEMTDPG--QSSQEQQQQQQQTSDLPSQTPQRVSFPL 183

The following BLAST results are available for this feature:

BLAST of Spo27101.1 vs. NCBI nr
BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
BLAST of Spo27101.1 vs. TAIR (Arabidopsis)

BLAST of Spo27101.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902164056\|gb\|KNA06924.1\|	6.0e-94	99.4	hypothetical protein SOVF_1766...	[more]
gi\|731327694\|ref\|XP_010674656.1\|	5.1e-77	83.5	PREDICTED: transcription initi...	[more]
gi\|1000960724\|ref\|XP_015576093.1\|	1.6e-70	79.1	PREDICTED: transcription initi...	[more]
gi\|1000960730\|ref\|XP_002521322.2\|	1.6e-70	79.1	PREDICTED: transcription initi...	[more]
gi\|743878736\|ref\|XP_011035723.1\|	3.9e-69	78.0	PREDICTED: transcription initi...	[more]

BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9QI52_SPIOL	4.2e-94	99.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8CNR2_BETVU	3.6e-77	83.5	Uncharacterized protein OS=Bet...	[more]
B9S5Q3_RICCO	1.1e-70	79.1	Putative uncharacterized prote...	[more]
B9GKT8_POPTR	2.7e-69	77.4	TATA BINDING protein ASSOCIATE...	[more]
A9PCE8_POPTR	2.7e-69	78.0	Putative uncharacterized prote...	[more]

BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
TAF9_ARATH	6.1e-62	70.4	Transcription initiation facto...	[more]
TAF9_BOVIN	2.9e-32	50.3	Transcription initiation facto...	[more]
TAF9B_MOUSE	9.5e-31	50.8	Transcription initiation facto...	[more]
TAF9_RAT	1.6e-30	43.0	Transcription initiation facto...	[more]
TAF9B_RAT	2.1e-30	50.0	Transcription initiation facto...	[more]

BLAST of Spo27101.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
AT1G54140.1	3.4e-63	70.4	TATA binding protein associate...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 6..125 score: 8.0
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 9..76 score: 7.7
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 9..73 score: 7.54
None	No IPR available	PANTHER	PTHR12595	POS9-ACTIVATING FACTOR FAP7-RELATED	coord: 2..181 score: 1.1
None	No IPR available	PANTHER	PTHR12595:SF6	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 9	coord: 2..181 score: 1.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription by RNA polymerase II
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003743	translation initiation factor activity