Spo16758.1 (mRNA) | SpinachBase

Overview


Name	Spo16758.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Bile acid:sodium symporter, putative
Location	chr4 : 35079870 .. 35082058 (+)
Sequence length	444

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTATGGGCTTTATCTGCCATCGACCATGTAGAACTGTGTGGTCAGGTTTTTTATTTTTGTTCTCTTCATCTAATATTTTAAAATTTCAACTTTTGATGCTTAATCTTGATAACACTGCTTATTAGGTTATAATTCCACCCGTCCTGAAAAATATCTGCATAAAGGGCACCACATATTATTCTGTTACTATAGTATCGGGTGAAATAACAAAGCCAAAAGTAGGGACACTTGAGCAAAATAAATTCCAGATTGGAGTATATTTAACTTTTCCCAGTTTATGTCCATATTACAGTCAGATTTAGTTTCTTATTGTCACTAGTATCATGTATCCTGATTTTAACATGAAATTCATCTCAACAGTTACAGTACCTTTTGGTTTATAGCTGCTGAACAGATATACACATGAAATTAGAAGTTGAGGTTGGCTCCTATCTCAACAATGTACTAAATACCTGCATATACTTTATTTTTCTTCTCCATGATATCAGGTTCCATGGATACAAGTGAGCAAATCTAGGTCGTTGCTATTGATGGTTAACCCTACCGACTTTCTTTTAGCTATAGGCCTTGGAGCGTAAGTAACACAATCTGAGTTCACCTTCTAAGTACATAGATTCTTATTCCATGACTTGCTGCTGGCTTTACAGTGTTCTCTCTGTTTTTAGCCAGTCACTGGTAGTGCTGGTGCTCTTTATGGTTCTTACCGAAATGATAATCAATACCTATTATTGCTGACTTAAATATTTACTGGATAGGTGTTGCTTGGTGATAGCTTGTTCTTGACCTGTTTGTCTGTATGATTTTTTGTTTTTTTGGTTGAAATTTGTCTGTATGATTCGTAAAGTGAATTTTGTTTCCATAAATAGTACATATTATGCAAAGTGTGATAGCCCTGTACGGCTATAATATCTTTTGCACTGATCAACTTGATGGACAATATACGTTTAAAAGATTAAAGCCGAAGATACACAAACTTATGTGGTAGGTCAGTCAGTCCCCTTATTTTTCCTTTAATTGGAAACATTATGGTATTTACAATTTCAAACAGAAAGTTTTTACTCTGGCCGTGAGCTATTAGTTGCCCCCTTTTCCATGTATTTCTAGTCATTCCAATCGGCTAAAATTGTTCGGCCATAAGTCACCTGGTTGCTGTTCAACCCTGCAGTCATCTGCTCATACTCTATATTAACAAATGTAATATAAAAGCCTAAAATAGTGATTTATTACAAAATTTACGTTGATTAGGAAATTAATTGGTATTTATCTACTGTGCTTTTGTAGAAGCTGACAATTTTAAGACTCCCTTGTAATATTACTTTAACAAAAGGGTTAAAGAGATAAATTACCAATGGCAATCGTGCTTGAACAATGTCGGGTTGTGTATGTCAGTATCAAATTTGAGAAAGTTTTCCAACCCGAGTTGACCTGACAACTTGAAATGACCCGACCCAAATAGATCCATCGGCTGTCTTCCAAGAGATTGTCCCTTGATAAAAAAAAAAAGAAGGAATTGTTTATGAGAATTGTATGGCAGATGGTATTCTTCACTATTCAGTGGCTTTTGCATTTTGAATCAAGGACTTATTGGCTATTTGCTGTTCGGTTTGCAGTCTCCTCCACTTTGTTCTGTTAGCTTTTAATGCTCTTTCCATAAAGATTATATCATCTATATCCGGTGGTAGCAAATCTGTCTTCTCCAAAAGACAAAACGCCATTGCTCTGCTTTTAGTTGCAAGCCAGGTGAGTCTTCCTTCAATTATCCAATGATGATTAAATTCAAAATTTAAGGACTTAAGGCTTGAAATTGATGCAAAATCAGTTGATGGTTCAGTTCTTAAGGTGTTCTCTTTGTTTTTAGCTTGATATTGTGCTTGTTTTTCGGATGGGTAGAAAACCCTGCCTGTCATGGTTGCAGTTGTAGATCAGCTTGGTGGAGCAATGGGTGCTCCTGGTTTGCTGATTCTCCCTTGTGTTGCAGCACATCTAAATCAGGTTGCTTAGTGTTTTGTCTTACTTACGTGGCTCTTTTGACTTTTGAGGGAACAGAAGTAACTCTTGGTTTCAGCTTTACTAACACCGAGCCTTTTGGGCAACATTTCATCATGCAGATCATTTTGGATTCTTTTCTTGTTAATTCTTTGCTTCGAAGAGATCAGCACATTCATCTTGCAAAGGGAGCCTAG

mRNA sequence

ATGTCTTTATGGGCTTTATCTGCCATCGACCATGTAGAACTGTGTGGTCAGGTTCCATGGATACAAGTGAGCAAATCTAGGTCGTTGCTATTGATGGTTAACCCTACCGACTTTCTTTTAGCTATAGGCCTTGGAGCTCTCCTCCACTTTGTTCTGTTAGCTTTTAATGCTCTTTCCATAAAGATTATATCATCTATATCCGGTGGTAGCAAATCTGTCTTCTCCAAAAGACAAAACGCCATTGCTCTGCTTTTAGTTGCAAGCCAGAAAACCCTGCCTGTCATGGTTGCAGTTGTAGATCAGCTTGGTGGAGCAATGGGTGCTCCTGGTTTGCTGATTCTCCCTTGTGTTGCAGCACATCTAAATCAGATCATTTTGGATTCTTTTCTTGTTAATTCTTTGCTTCGAAGAGATCAGCACATTCATCTTGCAAAGGGAGCCTAG

Coding sequence (CDS)

ATGTCTTTATGGGCTTTATCTGCCATCGACCATGTAGAACTGTGTGGTCAGGTTCCATGGATACAAGTGAGCAAATCTAGGTCGTTGCTATTGATGGTTAACCCTACCGACTTTCTTTTAGCTATAGGCCTTGGAGCTCTCCTCCACTTTGTTCTGTTAGCTTTTAATGCTCTTTCCATAAAGATTATATCATCTATATCCGGTGGTAGCAAATCTGTCTTCTCCAAAAGACAAAACGCCATTGCTCTGCTTTTAGTTGCAAGCCAGAAAACCCTGCCTGTCATGGTTGCAGTTGTAGATCAGCTTGGTGGAGCAATGGGTGCTCCTGGTTTGCTGATTCTCCCTTGTGTTGCAGCACATCTAAATCAGATCATTTTGGATTCTTTTCTTGTTAATTCTTTGCTTCGAAGAGATCAGCACATTCATCTTGCAAAGGGAGCCTAG

Protein sequence

MSLWALSAIDHVELCGQVPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFSKRQNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLLRRDQHIHLAKGA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo16758	Spo16758	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo16758.1	Spo16758.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16758.1.exon.1	Spo16758.1.exon.1	exon
Spo16758.1.exon.2	Spo16758.1.exon.2	exon
Spo16758.1.exon.3	Spo16758.1.exon.3	exon
Spo16758.1.exon.4	Spo16758.1.exon.4	exon
Spo16758.1.exon.5	Spo16758.1.exon.5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16758.1.CDS.1	Spo16758.1.CDS.1	CDS
Spo16758.1.CDS.2	Spo16758.1.CDS.2	CDS
Spo16758.1.CDS.3	Spo16758.1.CDS.3	CDS
Spo16758.1.CDS.4	Spo16758.1.CDS.4	CDS
Spo16758.1.CDS.5	Spo16758.1.CDS.5	CDS

Homology

[Close]

BLAST of Spo16758.1 vs. NCBI nr
Match: gi|902189942|gb|KNA11508.1| (hypothetical protein SOVF_134630 [Spinacia oleracea])

HSP 1 Score: 241.5 bits (615), Expect = 9.200e-61
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 1


		  
Query: 16  GQVPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFS 75
           G VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFS
Sbjct: 298 GFVPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFS 357

Query: 76  KRQNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLL 135
           KRQNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLL
Sbjct: 358 KRQNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLL 417

Query: 136 RRDQHIHLAKGA 148
           RRDQHIHLAKGA
Sbjct: 418 RRDQHIHLAKGA 429

[Close]

BLAST of Spo16758.1 vs. NCBI nr
Match: gi|731375480|ref|XP_010667271.1| (PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 209.9 bits (533), Expect = 3.000e-51
Identity = 111/130 (85.38%), Postives = 121/130 (93.08%), Query Frame = 1


		  
Query: 18  VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFSKR 77
           VPWIQ+SKS SLLLMVNPT FLLAIGLGALLHF+LLAFNAL+IK+ISS+SGGS S+FS+R
Sbjct: 298 VPWIQISKSSSLLLMVNPTSFLLAIGLGALLHFLLLAFNALAIKVISSLSGGSMSLFSQR 357

Query: 78  QNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLLRR 137
           +NAIALLLVASQKTLPVMVAVVDQ GGAMGAPGLLILPCVAAHLNQIILDSFLVNS L+R
Sbjct: 358 KNAIALLLVASQKTLPVMVAVVDQFGGAMGAPGLLILPCVAAHLNQIILDSFLVNSFLQR 417

Query: 138 DQHIHLAKGA 148
           D  +H  KGA
Sbjct: 418 DHPVHHTKGA 427

[Close]

BLAST of Spo16758.1 vs. NCBI nr
Match: gi|731375483|ref|XP_010667272.1| (PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 209.9 bits (533), Expect = 3.000e-51
Identity = 111/130 (85.38%), Postives = 121/130 (93.08%), Query Frame = 1


		  
Query: 18  VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFSKR 77
           VPWIQ+SKS SLLLMVNPT FLLAIGLGALLHF+LLAFNAL+IK+ISS+SGGS S+FS+R
Sbjct: 260 VPWIQISKSSSLLLMVNPTSFLLAIGLGALLHFLLLAFNALAIKVISSLSGGSMSLFSQR 319

Query: 78  QNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLLRR 137
           +NAIALLLVASQKTLPVMVAVVDQ GGAMGAPGLLILPCVAAHLNQIILDSFLVNS L+R
Sbjct: 320 KNAIALLLVASQKTLPVMVAVVDQFGGAMGAPGLLILPCVAAHLNQIILDSFLVNSFLQR 379

Query: 138 DQHIHLAKGA 148
           D  +H  KGA
Sbjct: 380 DHPVHHTKGA 389

[Close]

BLAST of Spo16758.1 vs. NCBI nr
Match: gi|645252203|ref|XP_008232015.1| (PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Prunus mume])

HSP 1 Score: 180.6 bits (457), Expect = 1.900e-42
Identity = 94/128 (73.44%), Postives = 112/128 (87.50%), Query Frame = 1


		  
Query: 18  VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFSKR 77
           VPWIQVS+SRSLLLMV P  FL+AIG+G LLH +LL FNAL++K IS++SGGS+SVFSK+
Sbjct: 288 VPWIQVSRSRSLLLMVKPPVFLVAIGMGVLLHLILLVFNALALKSISAVSGGSRSVFSKK 347

Query: 78  QNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLLRR 137
           +NAIA+LLVASQKTLPVMVAVV+QLGGA+G  GLL++PCVAAHLNQII+DSFLVN  LR+
Sbjct: 348 ENAIAVLLVASQKTLPVMVAVVEQLGGALGESGLLVVPCVAAHLNQIIIDSFLVNFWLRK 407

Query: 138 DQHIHLAK 146
           D   H  K
Sbjct: 408 DLSTHSTK 415

[Close]

BLAST of Spo16758.1 vs. NCBI nr
Match: gi|1009170982|ref|XP_015866493.1| (PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 174.1 bits (440), Expect = 1.800e-40
Identity = 91/130 (70.00%), Postives = 111/130 (85.38%), Query Frame = 1


		  
Query: 18  VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFSKR 77
           VPWIQVS+SRSLLLMVNPT+FL+A+G+  LLH +L+AFNAL++K +SS+SGG +SVF K+
Sbjct: 236 VPWIQVSRSRSLLLMVNPTNFLVAVGMAVLLHIILVAFNALAMKSLSSLSGGDQSVFGKK 295

Query: 78  QNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLLRR 137
           +N+ AL+LVASQKTLPVMVAVV+QLGGA+G  GLL+LPCVAAHLNQIILDS LVN   R 
Sbjct: 296 ENSTALVLVASQKTLPVMVAVVEQLGGALGESGLLVLPCVAAHLNQIILDSILVNFWFRN 355

Query: 138 DQHIHLAKGA 148
           D   + AK A
Sbjct: 356 DTSSNNAKVA 365

[Close]

BLAST of Spo16758.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXS7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_134630 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.400e-61
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 1


		  
Query: 16  GQVPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFS 75
           G VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFS
Sbjct: 298 GFVPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFS 357

Query: 76  KRQNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLL 135
           KRQNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLL
Sbjct: 358 KRQNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLL 417

Query: 136 RRDQHIHLAKGA 148
           RRDQHIHLAKGA
Sbjct: 418 RRDQHIHLAKGA 429

[Close]

BLAST of Spo16758.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B324_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_007710 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.100e-51
Identity = 111/130 (85.38%), Postives = 121/130 (93.08%), Query Frame = 1


		  
Query: 18  VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFSKR 77
           VPWIQ+SKS SLLLMVNPT FLLAIGLGALLHF+LLAFNAL+IK+ISS+SGGS S+FS+R
Sbjct: 298 VPWIQISKSSSLLLMVNPTSFLLAIGLGALLHFLLLAFNALAIKVISSLSGGSMSLFSQR 357

Query: 78  QNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLLRR 137
           +NAIALLLVASQKTLPVMVAVVDQ GGAMGAPGLLILPCVAAHLNQIILDSFLVNS L+R
Sbjct: 358 KNAIALLLVASQKTLPVMVAVVDQFGGAMGAPGLLILPCVAAHLNQIILDSFLVNSFLQR 417

Query: 138 DQHIHLAKGA 148
           D  +H  KGA
Sbjct: 418 DHPVHHTKGA 427

[Close]

BLAST of Spo16758.1 vs. UniProtKB/TrEMBL
Match: A0A103Y9L1_CYNCS (Putative sodium bile acid cotransporter OS=Cynara cardunculus var. scolymus GN=Ccrd_016586 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.800e-40
Identity = 91/134 (67.91%), Postives = 114/134 (85.07%), Query Frame = 1


		  
Query: 14  LCGQVPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSV 73
           L   VPWIQVSKSRSLLLMV PT FL+A+ +GALLH +LL FNA+SI+I+ ++SGGSKSV
Sbjct: 299 LLSLVPWIQVSKSRSLLLMVKPTVFLVAVLMGALLHLILLGFNAISIQILCAVSGGSKSV 358

Query: 74  FSKRQNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNS 133
           F+K++N+ ALLL+ASQKTLPV+VAVVDQLGG+ G  GLL+LPCVAAHLNQII+DSFLV+ 
Sbjct: 359 FAKKENSSALLLIASQKTLPVLVAVVDQLGGSFGESGLLVLPCVAAHLNQIIMDSFLVSF 418

Query: 134 LLRRDQHIHLAKGA 148
             +++Q +  AK A
Sbjct: 419 WNKKEQSLGDAKMA 432

[Close]

BLAST of Spo16758.1 vs. UniProtKB/TrEMBL
Match: A0A061FR58_THECC (Sodium Bile acid symporter family isoform 1 OS=Theobroma cacao GN=TCM_043898 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.200e-40
Identity = 92/130 (70.77%), Postives = 111/130 (85.38%), Query Frame = 1


		  
Query: 18  VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFSKR 77
           VPWIQVS+SRSLLLMV PT F++AIG+GALLH VLLAFN L+I+ +S+++GGS+S+F+K+
Sbjct: 402 VPWIQVSRSRSLLLMVKPTVFIVAIGIGALLHLVLLAFNTLAIRSLSAVTGGSESIFAKK 461

Query: 78  QNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLLRR 137
           +NA A LLVASQKTLPVMVAVV+QLGGA G  GLL+LPCVAAH+ QIILDSFLVN  LR 
Sbjct: 462 ENAQAALLVASQKTLPVMVAVVEQLGGAFGESGLLVLPCVAAHIIQIILDSFLVNFWLRM 521

Query: 138 DQHIHLAKGA 148
           D   + AK A
Sbjct: 522 DLPSNTAKVA 531

[Close]

BLAST of Spo16758.1 vs. UniProtKB/TrEMBL
Match: A0A061FQF8_THECC (Sodium Bile acid symporter family isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_043898 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.200e-40
Identity = 92/130 (70.77%), Postives = 111/130 (85.38%), Query Frame = 1


		  
Query: 18  VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFSKR 77
           VPWIQVS+SRSLLLMV PT F++AIG+GALLH VLLAFN L+I+ +S+++GGS+S+F+K+
Sbjct: 274 VPWIQVSRSRSLLLMVKPTVFIVAIGIGALLHLVLLAFNTLAIRSLSAVTGGSESIFAKK 333

Query: 78  QNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLLRR 137
           +NA A LLVASQKTLPVMVAVV+QLGGA G  GLL+LPCVAAH+ QIILDSFLVN  LR 
Sbjct: 334 ENAQAALLVASQKTLPVMVAVVEQLGGAFGESGLLVLPCVAAHIIQIILDSFLVNFWLRM 393

Query: 138 DQHIHLAKGA 148
           D   + AK A
Sbjct: 394 DLPSNTAKVA 403

[Close]

BLAST of Spo16758.1 vs. ExPASy Swiss-Prot
Match: BASS4_ARATH (Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Arabidopsis thaliana GN=BASS4 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.700e-36
Identity = 83/120 (69.17%), Postives = 100/120 (83.33%), Query Frame = 1


		  
Query: 18  VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFSKR 77
           VPWIQVS+SRSLLL V P  FL A+G+G LLH  LLAFNA+SI+I+S ++GGSKS    +
Sbjct: 309 VPWIQVSRSRSLLLSVQPKVFLAAVGIGILLHLSLLAFNAVSIRILSGLTGGSKS---SK 368

Query: 78  QNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLLRR 137
           +N+ A+LLV+SQKTLPVMVAVV+QLGGA G  GLL+LPCVAAHLNQI++DS LVN  LRR
Sbjct: 369 ENSTAVLLVSSQKTLPVMVAVVEQLGGAFGETGLLVLPCVAAHLNQIMIDSVLVNLWLRR 425

[Close]

BLAST of Spo16758.1 vs. ExPASy Swiss-Prot
Match: BASS4_ORYSI (Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. indica GN=BASS4 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.400e-34
Identity = 78/132 (59.09%), Postives = 100/132 (75.76%), Query Frame = 1


		  
Query: 14  LCGQVPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSV 73
           L   VPWIQVS+SRSLLL V P  F +A+ +G LLHF LLAFNA ++ I+S +     SV
Sbjct: 292 LLSLVPWIQVSRSRSLLLSVQPKAFAVAVTVGVLLHFALLAFNAAALHILSRLEQRGVSV 351

Query: 74  FSKRQNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNS 133
           F++ + A A++LVASQKTLPV+VAVV+QLGGA+G  GLL++PCVAAH+NQII+DS +VN 
Sbjct: 352 FARNEYARAVILVASQKTLPVLVAVVEQLGGALGESGLLVIPCVAAHINQIIIDSIIVNW 411

Query: 134 LLRRDQHIHLAK 146
             +RDQ    AK
Sbjct: 412 WRQRDQQFANAK 423

[Close]

BLAST of Spo16758.1 vs. ExPASy Swiss-Prot
Match: BASS4_ORYSJ (Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS4 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.400e-34
Identity = 78/132 (59.09%), Postives = 100/132 (75.76%), Query Frame = 1


		  
Query: 14  LCGQVPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSV 73
           L   VPWIQVS+SRSLLL V P  F +A+ +G LLHF LLAFNA ++ I+S +     SV
Sbjct: 292 LLSLVPWIQVSRSRSLLLSVQPKAFAVAVTVGVLLHFALLAFNAAALHILSRLEQRGVSV 351

Query: 74  FSKRQNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNS 133
           F++ + A A++LVASQKTLPV+VAVV+QLGGA+G  GLL++PCVAAH+NQII+DS +VN 
Sbjct: 352 FARNEYARAVILVASQKTLPVLVAVVEQLGGALGESGLLVIPCVAAHINQIIIDSIIVNW 411

Query: 134 LLRRDQHIHLAK 146
             +RDQ    AK
Sbjct: 412 WRQRDQQFANAK 423

[Close]

BLAST of Spo16758.1 vs. TAIR (Arabidopsis)
Match: AT3G56160.1 (Sodium Bile acid symporter family)

HSP 1 Score: 152.9 bits (385), Expect = 1.500e-37
Identity = 83/120 (69.17%), Postives = 100/120 (83.33%), Query Frame = 1


		  
Query: 18  VPWIQVSKSRSLLLMVNPTDFLLAIGLGALLHFVLLAFNALSIKIISSISGGSKSVFSKR 77
           VPWIQVS+SRSLLL V P  FL A+G+G LLH  LLAFNA+SI+I+S ++GGSKS    +
Sbjct: 309 VPWIQVSRSRSLLLSVQPKVFLAAVGIGILLHLSLLAFNAVSIRILSGLTGGSKS---SK 368

Query: 78  QNAIALLLVASQKTLPVMVAVVDQLGGAMGAPGLLILPCVAAHLNQIILDSFLVNSLLRR 137
           +N+ A+LLV+SQKTLPVMVAVV+QLGGA G  GLL+LPCVAAHLNQI++DS LVN  LRR
Sbjct: 369 ENSTAVLLVSSQKTLPVMVAVVEQLGGAFGETGLLVLPCVAAHLNQIMIDSVLVNLWLRR 425

The following BLAST results are available for this feature:

BLAST of Spo16758.1 vs. NCBI nr
BLAST of Spo16758.1 vs. UniProtKB/TrEMBL
BLAST of Spo16758.1 vs. ExPASy Swiss-Prot
BLAST of Spo16758.1 vs. TAIR (Arabidopsis)

BLAST of Spo16758.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902189942\|gb\|KNA11508.1\|	9.2e-61	99.2	hypothetical protein SOVF_1346...	[more]
gi\|731375480\|ref\|XP_010667271.1\|	3.0e-51	85.3	PREDICTED: probable sodium/met...	[more]
gi\|731375483\|ref\|XP_010667272.1\|	3.0e-51	85.3	PREDICTED: probable sodium/met...	[more]
gi\|645252203\|ref\|XP_008232015.1\|	1.9e-42	73.4	PREDICTED: probable sodium/met...	[more]
gi\|1009170982\|ref\|XP_015866493.1\|	1.8e-40	70.0	PREDICTED: probable sodium/met...	[more]

BLAST of Spo16758.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QXS7_SPIOL	6.4e-61	99.2	Uncharacterized protein OS=Spi...	[more]
A0A0J8B324_BETVU	2.1e-51	85.3	Uncharacterized protein OS=Bet...	[more]
A0A103Y9L1_CYNCS	4.8e-40	67.9	Putative sodium bile acid cotr...	[more]
A0A061FR58_THECC	8.2e-40	70.7	Sodium Bile acid symporter fam...	[more]
A0A061FQF8_THECC	8.2e-40	70.7	Sodium Bile acid symporter fam...	[more]

BLAST of Spo16758.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
BASS4_ARATH	2.7e-36	69.1	Probable sodium/metabolite cot...	[more]
BASS4_ORYSI	7.4e-34	59.0	Probable sodium/metabolite cot...	[more]
BASS4_ORYSJ	7.4e-34	59.0	Probable sodium/metabolite cot...	[more]

BLAST of Spo16758.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G56160.1	1.5e-37	69.1	Sodium Bile acid symporter fam...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016833	Putative sodium bile acid cotransporter	PANTHER	PTHR18640	FAMILY NOT NAMED	coord: 18..139 score: 4.6
IPR016833	Putative sodium bile acid cotransporter	PFAM	PF13593	SBF_like	coord: 18..134 score: 8.8
None	No IPR available	PANTHER	PTHR18640:SF9	SODIUM/METABOLITE COTRANSPORTER BASS4, CHLOROPLASTIC-RELATED	coord: 18..139 score: 4.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0016021	integral component of membrane