Spo26288.1 (mRNA)

Overview
NameSpo26288.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionTransducin/WD40 repeat-like superfamily protein
Locationchr4 : 49703989 .. 49708045 (-)
Sequence length798
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTACGGTGTCGCCGCTATCAAAGATCCTAACTCCCAGGTTTTTTTGTTTTTCTCTATCAAAGATACTTGGAGAACGACAAGTATGAAGAAGATTCGTTGATTTAATTGCTGAATTGTTGGTGATTTATTGTTCTTCGTTTTGCTTGTTAATTTGATGAAAATCTGGTGGGTTCTGTTAATTTACAAAATGCAATTTAAAACAAAAATCTACAACTAAGTCGAAATCCTTCTTCATGATATGGGGAAAACCCTATGTTAAACTGATTCGGGTCATTTTAGGGTTTAATTTGTTGTTATTTAGGTCAATTTGTTGAATTTTTGGTCAAATTGGTTTGGGTTCTTGAATTTCTTATCTTTTTGAAGGAGATAGTCTTCATCTAGTGTGTCAGTCATGTGGTGGTATGTGGGGAAGGGCTGGAGAGGGAAGATGAGAAGGAGATAGAGGCTGAGAGATACACGAAAGAGGAGGGAGGGTGCAGGGTAAGGGGTGTTGTATCGGTTGATATGGGAATACAGAAGGTGTTTCAGGAGGGAAGAAGATGGTGGATTTTTGACCTTCTGCGGCTCGATGGAAATTGAGATGTTGTTAGCATCAAACATCAGAAATCCCTCTGGAGCCGTGATCCTTTCTAACCCCATACAACTCCCATACAACTAGTGAGTCATTACAACTAGTAAGGAATCATCTGATTTGCTTCTGATTTGTGGCTCTATTGTACTGAGTTCTGAACTGATTTGCTGCTGATTTGTTGCTCTATTGTACTGAGTTCTGAACTGATTTGCTATTCTGCTAGCTTTTCCTAACCTGATTTCATGTAACTAAGCTGAGCTGATCTTATTTTTGCTAGTTTTAAGGAGTTTGTTATTGCTTGTTAGTTGGGATTGCTGAATTATCTGTGTAAAAGATTGGGATTGCTGAATTGTCTTCGTAAGGTTTGGGATTACTGAATTTATGGTTTCTGCCTTCCTCTGGTCAGCATATTTTTATTATTTGGATTAGTTTTTCATCTTACGATGTACATATTGAGCTTTTGATGGTATGGATGAGATTACTGCATCCTTTTCAATTGCTTTCAACCCTACTGGAACCAAGTATATACCATCATATGCTTGGAGAATTCTTTGTTGTCCTTTTCTGATTTTTACTTTCATGTATTTGTATCTTGTCAAATAACAAGTGTTGAACACCATCTAATTCGAGGACTATACCTGAATTGTGTGCAATGTTTACATGATTTGGCAGGATTGATTGAGCGGTTTGTCTTATTCTCATCTTTTCTCATGTTACTCAATTCCTTCGCAGTATATTTGCTGGGTACAACAAAACACTGAGGGTGTTTGATGTACATCGCCCTGGCGGAGATTTTAAACAACATTCAACTCTTCAAGGATCCAAAGAAAGGGAAGTCTGGTATAGCATTCTGCCTTTTCACATAATTGCACAACTTTTGCGAAGGTTTTTTTTTATTGTTTTAGAAGTTTGTTCAAGCTAAATTTTAGTTCAGGGCTTAAAAGAAGAGTCTTGGTGGTTGATAAGAAAAATATTCTGAATGTTTAAACTTCAAATACAGTCACAATGTATTGCACTAATAGCAACCAGAATGGAATCATGAATGTTTTGTATAAATGTACCCGTAGTAGGAGGTGATGGTTGTGTTTTTGTATAACTATCTTATTATTTTCCTTTTTGTGTTGGCACTTTGCATTTTACATTGTTCTATAATCTTAAGGTAAATCTTATAAGTGTTTATATTAAAATTCTTTTTTCTGCTGGACCAGACTCATATTCACTACATGATTAGTTGAGATAATTTTGTTCTGCCAAGCTTATTCAACTCAATAACCTACTTAATTAAACTCCTCCTTGCTTCTCATTTTGGCTTCAATAAAGAATCTTGTCTAATTCATTGTCTTCCTAGGGCCTCTCTCTATGGGTGCTTTAACCCGTTTCTATATCAATGCAAAGAACAGATCTAGTTTAATTTGAACAATGATAGATTATATTTCTACTATGTTGTAAATCTTATTTGTTGATGTACTGATGTGAAATTTGAGCATAACATGAAACAAATTGTTTCACAAGGTTTCAGTAGAATAAACCAATAAGAGTAGTATAGCTATTGACCAGGAAGAATCAGGTTTAGACTCTACAGAGTGCCAAGTGGTTCTGGTTGCTTATGGTCAACGCAGGTCAATGAATAAATGAGGGCTAGAAATGCAAGCCTCAACTTTGGTATGTGTTGAATCTTGAATGTTTGGCTATCATAAATTCGTAGCCTTTTAGCAAGCATTAGGAAAGAGTACTGGGAGGGTTATGGGTCCTGCAGCTTACCGCTATGATCTAATTAAGACATTGTATTTGTTCTTCAGGTTTCATGAGTTGAAGGCTACACAGTTCCTCCTGATTTCATCCTGCTTACTCTACCAAGCTTTCCCATGGCAGTGCTGGAAGCTGAGTTAAAGTTGCCTACAGATTCATATACCGCCAACCTTATAATAAACGAGGGAGAGTCTGTGTATGATTATTGTTGGTACCCTTACATGTCTGCTTCAGGTATGTACTACATGCCTTTAACCTTCTTTTGTGTTCACATATATGTAACTGTTTAATTTTTTATTTTTTCTTTTACATGAAGTATACGAATGCAAATCAAAACTAGTTTCCTCCCTCGTTGATCATAATCATATTGATGTAGTGATTATGAACCAATATAATGTAACTATTTCTTCCAGAAATTAATTTGTGAAAAACATGGAGATTAGTGTATTTTGGTTAAAGTTAGGAGAAAATTAGGTAGTTTATTGCATTCTTAGACTAACTTTCCATATTATATGACTTTTACTGAGAGGAAATTGTGGGGTTGCTCATATTTTAATTAGGCCCTTTTTATTCTTCACATGTTTGCAATGAATTAGAGTTATTTTTTGTGTTTAAAACAGACTTTTGCTGATTGTAATTGAATTAAAGTTCATTTTTCATGATTCTCTAGTGTTTTTTGTATGTGCAGTACAATTGATTAAAGCTGAATTTTAAGAATCAAAATACGTAGCAGTATTTACGGATTAAAACTGATATTCACTAGCATAGTCGTGTATTATTGGATGCAATTTTACTCTCTATACACAAACATATTTACCATTGTCACACTGGTATAGTCGTGTCATTACTAGAACTCGTTGTATGTTAGCAATGCCTAAAACCAGCATCGTTATACCCAATTTCTTTTATAGGATGTTCATTATGACATTATACCACCAAGCTTTGAGCAATAGTTTTCATTCTATCTACTAAAGTAATTTACTATCTGCTAGTCTTACATATCACAGTCTGAAAAGCCCGAACAAAGGAAACAATAGTGAGACCTGTTTCTTTGTCCATTTTTTGTGATCATACTGCATTATGTTAACTCATTTGATGATCATCTAAGCATATCATATATTCTTCCAGTTCTTTCGGCAGTGTCTGGAGTTCGTCTAAAATTCACGGGACTTCATGAAAGTAAGTTCTACTTCGTCCACAAATCAAAGGGGAAAAAAGGAAGAAAGAGAGGCATTACTAAAGTGTTTTAGAAACATGCAACTCAGCTGCAATGAAATTTACAATGCTTTTTGTCTGACAAATAATATCTTATTTTGCAGATTATGTCGTTGTGGTTTCCTGCATCATTTTGGTAGTCCTGTTTTCTCTCCAACATCATGGAACACATAGGGTTTCTTTCATGTTTGGACCAATTGTTTTAGCATGGCTCCTTTGAATCAGCAGCATCAGTGCTTATAATATTATAAGGTGGTCATTTGTGTTTATTGATTAAGTCAAGTACTGAATATTGTTCATCTGATTGTTTTAATTAGGATAGAAATGTTGATGTAATATGTAGATTGATTGAATATCAATTGTTGGTTTGGCTTAGAATGTGATGGTGGTTTGGTGTTTATTGCTATAATCAAGTGGTAGATGGTGGGTGTATTGCATTTGGTTGTTTCACTAGGGATTAATCTGGCAATGGATTCTTCTAATTTTTTTTTTTGTAAAATAAATGTACTATTTGCAGC

mRNA sequence

ATGTTTACGGTGTCGCCGCTATCAAAGATCCTAACTCCCAGTATATTTGCTGGGTACAACAAAACACTGAGGGTGTTTGATGTACATCGCCCTGGCGGAGATTTTAAACAACATTCAACTCTTCAAGGATCCAAAGAAAGGGAAGTCTGGTTTCATGAGTTGAAGGCTACACAGTTCCTCCTGATTTCATCCTGCTTACTCTACCAAGCTTTCCCATGGCAGTGCTGGAAGCTGAGTTAAAGTTGCCTACAGATTCATATACCGCCAACCTTATAATAAACGAGGGAGAGTCTGTGTATGATTATTGTTGGTACCCTTACATGTCTGCTTCAGTTCTTTCGGCAGTGTCTGGAGTTCGTCTAAAATTCACGGGACTTCATGAAAATTATGTCGTTGTGGTTTCCTGCATCATTTTGGTAGTCCTGTTTTCTCTCCAACATCATGGAACACATAGGGTTTCTTTCATGTTTGGACCAATTGTTTTAGCATGGCTCCTTTGAATCAGCAGCATCAGTGCTTATAATATTATAAGGTGGTCATTTGTGTTTATTGATTAAGTCAAGTACTGAATATTGTTCATCTGATTGTTTTAATTAGGATAGAAATGTTGATGTAATATGTAGATTGATTGAATATCAATTGTTGGTTTGGCTTAGAATGTGATGGTGGTTTGGTGTTTATTGCTATAATCAAGTGGTAGATGGTGGGTGTATTGCATTTGGTTGTTTCACTAGGGATTAATCTGGCAATGGATTCTTCTAATTTTTTTTTTTGTAAAATAAATGTACTATTTGCAGC

Coding sequence (CDS)

ATGTTTACGGTGTCGCCGCTATCAAAGATCCTAACTCCCAGTATATTTGCTGGGTACAACAAAACACTGAGGGTGTTTGATGTACATCGCCCTGGCGGAGATTTTAAACAACATTCAACTCTTCAAGGATCCAAAGAAAGGGAAGTCTGGTTTCATGAGTTGAAGGCTACACAGTTCCTCCTGATTTCATCCTGCTTACTCTACCAAGCTTTCCCATGGCAGTGCTGGAAGCTGAGTTAA

Protein sequence

MFTVSPLSKILTPSIFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKEREVWFHELKATQFLLISSCLLYQAFPWQCWKLS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo26288Spo26288gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo26288.1Spo26288.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26288.1.CDS.3Spo26288.1.CDS.3CDS
Spo26288.1.CDS.2Spo26288.1.CDS.2CDS
Spo26288.1.CDS.1Spo26288.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26288.1.utr3p.3Spo26288.1.utr3p.3three_prime_UTR
Spo26288.1.utr3p.2Spo26288.1.utr3p.2three_prime_UTR
Spo26288.1.utr3p.1Spo26288.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo26288.1.exon.5Spo26288.1.exon.5exon
Spo26288.1.exon.4Spo26288.1.exon.4exon
Spo26288.1.exon.3Spo26288.1.exon.3exon
Spo26288.1.exon.2Spo26288.1.exon.2exon
Spo26288.1.exon.1Spo26288.1.exon.1exon


Homology
[Close]
BLAST of Spo26288.1 vs. NCBI nr
Match: gi|902132452|gb|KNA04318.1| (hypothetical protein SOVF_200770 [Spinacia oleracea])

HSP 1 Score: 164.1 bits (414), Expect = 1.000e-37
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 1 

		  

Query: 1  MFTVSPLSKILTPSIFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKEREVWFHELKATQFL 60
          MFTVSPLSKILTPSIFAGYNKTLRVFDVHR GGDFKQHSTLQGSKER VWFHELKATQFL
Sbjct: 1  MFTVSPLSKILTPSIFAGYNKTLRVFDVHRRGGDFKQHSTLQGSKERAVWFHELKATQFL 60

Query: 61 LISSCLLYQAFPWQCWKLS 80
          LISSCLLYQAFPWQCWKLS
Sbjct: 61 LISSCLLYQAFPWQCWKLS 79
[Close]
BLAST of Spo26288.1 vs. NCBI nr
Match: gi|902193336|gb|KNA12280.1| (hypothetical protein SOVF_127390 [Spinacia oleracea])

HSP 1 Score: 68.9 bits (167), Expect = 4.400e-9
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1 

		  

Query: 15  IFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKE 47
           IFAGYNKTLRVFDVHRPG DFKQHSTLQGSKE
Sbjct: 194 IFAGYNKTLRVFDVHRPGRDFKQHSTLQGSKE 225
[Close]
BLAST of Spo26288.1 vs. NCBI nr
Match: gi|697126386|ref|XP_009617227.1| (PREDICTED: telomerase Cajal body protein 1 [Nicotiana tomentosiformis])

HSP 1 Score: 62.8 bits (151), Expect = 3.200e-7
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1 

		  

Query: 15  IFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKE 47
           IFAGYNK++R+FDVHRPG DF QHSTLQG+KE
Sbjct: 197 IFAGYNKSIRIFDVHRPGRDFTQHSTLQGNKE 228
[Close]
BLAST of Spo26288.1 vs. NCBI nr
Match: gi|970006071|ref|XP_015063883.1| (PREDICTED: telomerase Cajal body protein 1 [Solanum pennellii])

HSP 1 Score: 62.4 bits (150), Expect = 4.100e-7
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 1 

		  

Query: 15  IFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKE 47
           IFAGYNK++R+FD+HRPG DF QHSTLQG+KE
Sbjct: 195 IFAGYNKSIRIFDIHRPGRDFTQHSTLQGNKE 226
[Close]
BLAST of Spo26288.1 vs. NCBI nr
Match: gi|460373999|ref|XP_004232799.1| (PREDICTED: telomerase Cajal body protein 1 [Solanum lycopersicum])

HSP 1 Score: 62.4 bits (150), Expect = 4.100e-7
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 1 

		  

Query: 15  IFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKE 47
           IFAGYNK++R+FD+HRPG DF QHSTLQG+KE
Sbjct: 195 IFAGYNKSIRIFDIHRPGRDFTQHSTLQGNKE 226
[Close]
BLAST of Spo26288.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCA6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_200770 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 7.000e-38
Identity = 77/79 (97.47%), Postives = 77/79 (97.47%), Query Frame = 1 

		  

Query: 1  MFTVSPLSKILTPSIFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKEREVWFHELKATQFL 60
          MFTVSPLSKILTPSIFAGYNKTLRVFDVHR GGDFKQHSTLQGSKER VWFHELKATQFL
Sbjct: 1  MFTVSPLSKILTPSIFAGYNKTLRVFDVHRRGGDFKQHSTLQGSKERAVWFHELKATQFL 60

Query: 61 LISSCLLYQAFPWQCWKLS 80
          LISSCLLYQAFPWQCWKLS
Sbjct: 61 LISSCLLYQAFPWQCWKLS 79
[Close]
BLAST of Spo26288.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYF1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127390 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.100e-9
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1 

		  

Query: 15  IFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKE 47
           IFAGYNKTLRVFDVHRPG DFKQHSTLQGSKE
Sbjct: 194 IFAGYNKTLRVFDVHRPGRDFKQHSTLQGSKE 225
[Close]
BLAST of Spo26288.1 vs. UniProtKB/TrEMBL
Match: K4B9D5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.900e-7
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 1 

		  

Query: 15  IFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKE 47
           IFAGYNK++R+FD+HRPG DF QHSTLQG+KE
Sbjct: 195 IFAGYNKSIRIFDIHRPGRDFTQHSTLQGNKE 226
[Close]
BLAST of Spo26288.1 vs. UniProtKB/TrEMBL
Match: A0A0V0I5Q7_SOLCH (Putative telomerase Cajal body protein 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.900e-7
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 1 

		  

Query: 15  IFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKE 47
           IFAGYNK++R+FD+HRPG DF QHSTLQG+KE
Sbjct: 182 IFAGYNKSIRIFDIHRPGRDFTQHSTLQGNKE 213
[Close]
BLAST of Spo26288.1 vs. UniProtKB/TrEMBL
Match: M1C1I6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022408 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.900e-7
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 1 

		  

Query: 15  IFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKE 47
           IFAGYNK++R+FD+HRPG DF QHSTLQG+KE
Sbjct: 195 IFAGYNKSIRIFDIHRPGRDFTQHSTLQGNKE 226
[Close]
BLAST of Spo26288.1 vs. TAIR (Arabidopsis)
Match: AT4G21520.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.400e-8
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1 

		  

Query: 15  IFAGYNKTLRVFDVHRPGGDFKQHSTLQGSKE 47
           IFAGYN ++RVFD+HRPG DF+Q+STLQ +KE
Sbjct: 178 IFAGYNSSIRVFDLHRPGRDFRQYSTLQKNKE 209
The following BLAST results are available for this feature:
BLAST of Spo26288.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902132452|gb|KNA04318.1|1.0e-3797.4hypothetical protein SOVF_2007... [more]
gi|902193336|gb|KNA12280.1|4.4e-996.8hypothetical protein SOVF_1273... [more]
gi|697126386|ref|XP_009617227.1|3.2e-781.2PREDICTED: telomerase Cajal bo... [more]
gi|970006071|ref|XP_015063883.1|4.1e-778.1PREDICTED: telomerase Cajal bo... [more]
gi|460373999|ref|XP_004232799.1|4.1e-778.1PREDICTED: telomerase Cajal bo... [more]
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BLAST of Spo26288.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QCA6_SPIOL7.0e-3897.4Uncharacterized protein OS=Spi... [more]
A0A0K9QYF1_SPIOL3.1e-996.8Uncharacterized protein OS=Spi... [more]
K4B9D5_SOLLC2.9e-778.1Uncharacterized protein OS=Sol... [more]
A0A0V0I5Q7_SOLCH2.9e-778.1Putative telomerase Cajal body... [more]
M1C1I6_SOLTU2.9e-778.1Uncharacterized protein OS=Sol... [more]
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BLAST of Spo26288.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26288.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G21520.11.4e-871.8Transducin/WD40 repeat-like su... [more]
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