Overview
Name Spo11657.1 Type mRNA Organism Spinacia oleracea (Spinach)Description Serine/threonine-protein kinase (2.7.11.1) Location chr4 : 51152779 .. 51153392 (-) Sequence length 291
Sequences
The following sequences are available for this feature:
Legend: polypeptide CDS exon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTATTCAGTTTCAAAGAAATTACAGCAGCCACAAATAATTTTTCATTTTACAAGAAGCTTGGAGAGGGTGGGTATGGACCGGTTTATAAG GAACAAAGACATGAGCACATAACATTCTGGCAGCTGATAGATTCCTTTCCCCGTCTCTTAGCAGATCTTGTGGAACGTTTGCAGCTCAATTGGGGAAAGCATGCTCACATCATCAAAAAGAATAATTCAAGGCCTCTTATACCTGCAAGAATACTCAAGGCTAACCATCATTCACCGAGATCTAAAAGCCAATAA
ATGAAGGTATTCAGTTTCAAAGAAATTACAGCAGCCACAAATAATTTTTCATTTTACAAGAAGCTTGGAGAGGGTGGGTATGGACCGGTTTATAAGGAACAAAGACATGAGCACATAACATTCTGGCAGCTGATAGATTCCTTTCCCCGTCTCTTAGCAGATCTTGTGGAACGTTTGCAGCTCAATTGGGGAAAGCATGCTCACATCATCAAAAAGAATAATTCAAGGCCTCTTATACCTGCAAGAATACTCAAGGCTAACCATCATTCACCGAGATCTAAAAGCCAATAA
ATGAAGGTATTCAGTTTCAAAGAAATTACAGCAGCCACAAATAATTTTTCATTTTACAAGAAGCTTGGAGAGGGTGGGTATGGACCGGTTTATAAGGAACAAAGACATGAGCACATAACATTCTGGCAGCTGATAGATTCCTTTCCCCGTCTCTTAGCAGATCTTGTGGAACGTTTGCAGCTCAATTGGGGAAAGCATGCTCACATCATCAAAAAGAATAATTCAAGGCCTCTTATACCTGCAAGAATACTCAAGGCTAACCATCATTCACCGAGATCTAAAAGCCAATAA
MKVFSFKEITAATNNFSFYKKLGEGGYGPVYKEQRHEHITFWQLIDSFPRLLADLVERLQLNWGKHAHIIKKNNSRPLIPARILKANHHSPRSKSQ
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name Unique Name Type
Spo11657 Spo11657 gene
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
Spo11657.1 Spo11657.1-protein polypeptide
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
Spo11657.1.CDS.2 Spo11657.1.CDS.2 CDS Spo11657.1.CDS.1 Spo11657.1.CDS.1 CDS
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
Spo11657.1.exon.2 Spo11657.1.exon.2 exon Spo11657.1.exon.1 Spo11657.1.exon.1 exon
Homology
BLAST of Spo11657.1 vs. TAIR (Arabidopsis)
Match:
AT1G11300.1 (protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding)
HSP 1 Score: 47.8 bits (112), Expect = 4.500e-6
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11657.1 vs. NCBI nr
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. NCBI nr )
Total hits: 0
A T G A A G G T A T T C A G T T T C A A A G A A A T T A C A G C A G C C A C A A A T A A T T T T T C A T T T T A C A A G A A G C T T G G A G A G G G T G G G T A T G G A C C G G T T T A T A A G G A A C A A A G A C A T G A G C A C A T A A C A T T C T G G C A G C T G A T A G A T T C C T T T C C C C G T C T C T T A G C A G A T C T T G T G G A A C G T T T G C A G C T C A A T T G G G G A A A G C A T G C T C A C A T C A T C A A A A A G A A T A A T T C A A G G C C T C T T A T A C C T G C A A G A A T A C T C A A G G C T A A C C A T C A T T C A C C G A G A T C T A A A A G C C A A T A A 50 100 150 200 250 Sequence
Match Name E-value Identity Description
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BLAST of Spo11657.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL )
Total hits: 0
A T G A A G G T A T T C A G T T T C A A A G A A A T T A C A G C A G C C A C A A A T A A T T T T T C A T T T T A C A A G A A G C T T G G A G A G G G T G G G T A T G G A C C G G T T T A T A A G G A A C A A A G A C A T G A G C A C A T A A C A T T C T G G C A G C T G A T A G A T T C C T T T C C C C G T C T C T T A G C A G A T C T T G T G G A A C G T T T G C A G C T C A A T T G G G G A A A G C A T G C T C A C A T C A T C A A A A A G A A T A A T T C A A G G C C T C T T A T A C C T G C A A G A A T A C T C A A G G C T A A C C A T C A T T C A C C G A G A T C T A A A A G C C A A T A A 50 100 150 200 250 Sequence
Match Name E-value Identity Description
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BLAST of Spo11657.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. ExPASy SwissProt )
Total hits: 0
A T G A A G G T A T T C A G T T T C A A A G A A A T T A C A G C A G C C A C A A A T A A T T T T T C A T T T T A C A A G A A G C T T G G A G A G G G T G G G T A T G G A C C G G T T T A T A A G G A A C A A A G A C A T G A G C A C A T A A C A T T C T G G C A G C T G A T A G A T T C C T T T C C C C G T C T C T T A G C A G A T C T T G T G G A A C G T T T G C A G C T C A A T T G G G G A A A G C A T G C T C A C A T C A T C A A A A A G A A T A A T T C A A G G C C T C T T A T A C C T G C A A G A A T A C T C A A G G C T A A C C A T C A T T C A C C G A G A T C T A A A A G C C A A T A A 50 100 150 200 250 Sequence
Match Name E-value Identity Description
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BLAST of Spo11657.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (
blastp Spinacia oleracea peptides vs. TAIR )
Total hits: 1
A T G A A G G T A T T C A G T T T C A A A G A A A T T A C A G C A G C C A C A A A T A A T T T T T C A T T T T A C A A G A A G C T T G G A G A G G G T G G G T A T G G A C C G G T T T A T A A G G A A C A A A G A C A T G A G C A C A T A A C A T T C T G G C A G C T G A T A G A T T C C T T T C C C C G T C T C T T A G C A G A T C T T G T G G A A C G T T T G C A G C T C A A T T G G G G A A A G C A T G C T C A C A T C A T C A A A A A G A A T A A T T C A A G G C C T C T T A T A C C T G C A A G A A T A C T C A A G G C T A A C C A T C A T T C A C C G A G A T C T A A A A G C C A A T A A 50 100 150 200 250 Expect = 4.50e-6 / Id = 54.05 Sequence AT1G11300.1
Match Name E-value Identity Description
AT1G11300.1 4.5e-6 54.0 protein serine/threonine kinas... [more]
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InterPro
Analysis Name:
InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
A T G A A G G T A T T C A G T T T C A A A G A A A T T A C A G C A G C C A C A A A T A A T T T T T C A T T T T A C A A G A A G C T T G G A G A G G G T G G G T A T G G A C C G G T T T A T A A G G A A C A A A G A C A T G A G C A C A T A A C A T T C T G G C A G C T G A T A G A T T C C T T T C C C C G T C T C T T A G C A G A T C T T G T G G A A C G T T T G C A G C T C A A T T G G G G A A A G C A T G C T C A C A T C A T C A A A A A G A A T A A T T C A A G G C C T C T T A T A C C T G C A A G A A T A C T C A A G G C T A A C C A T C A T T C A C C G A G A T C T A A A A G C C A A T A A 50 100 150 200 250 Score = 1.1E-6 Score = 7.7E-8 Sequence SSF56112 G3DSA:3.30.200.20
IPR Term IPR Description Source Source Term Source Description Alignment
IPR011009 Protein kinase-like domain unknown SSF56112 Protein kinase-like (PK-like) coord: 2..37 None No IPR available GENE3D 3.30.200.20 coord: 3..36
