Spo15855.1 (mRNA)

Overview
NameSpo15855.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01584 : 83800 .. 84585 (-)
Sequence length659
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTCGAAATCCTATAAATACATGGGCTTGGTTCTTAACTTGTTATCCCAATTCAAAACACAAATGGCAACTTCAAAGGCTTTTGTTCTTGTCATCCTTTTTGCTGCAACTCTTCTCATTTCCTCTGACAACGTCTCAGCTCGTGAACTTGTTCACCCTAACTCCACTCCACAGACACGTTAGTATCTTAACATTTGCGTATACAAAAAATATTTAATTTCGTCGTAATGCCATTAATTTGTTAATTGTTATTACTATCTAATTACATTGTTGTTGCCTACTGATTTTATTTATAATTTCTACAGATGCTTCTACAGCTGGATATGATGGTTCTTCACCTCACCATTCCTACGACGATGATCCAACCCAGGAACCGATTTTCCCCCCTCCCACGCATAAGAAGAAGAAAACGCATGGATGAAAACTTCAACTAATTAAGTATCCGATCGACCAAAGTGCTGTGTAACCATCTATTTTCCTTCAAATCTGTTTGTGTTTTTATGAAATAAAACTATTGTCACAATTCGTCGATAGCTTTCTCATAAATGTGTATTTGCTTCTTAAACTTTTATGTACTTGTAATTTGTAACTTGTAACCCGTGTGAGTGAAATTTTCCAACAAGTTAAATTTCTTCTACTTCGTATAATATGTTTTATTGATTTTGATTCGCAATTTAGAAGGTGGACCATGGTGCACAATGAGTATGATGCACCTTAAGAACACTAATATATAATTAAAAGAACATTTGGTTACGTA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCTCGAAATCCTATAAATACATGGGCTTGGTTCTTAACTTGTTATCCCAATTCAAAACACAAATGGCAACTTCAAAGGCTTTTGTTCTTGTCATCCTTTTTGCTGCAACTCTTCTCATTTCCTCTGACAACGTCTCAGCTCGTGAACTTGTTCACCCTAACTCCACTCCACAGACACATGCTTCTACAGCTGGATATGATGGTTCTTCACCTCACCATTCCTACGACGATGATCCAACCCAGGAACCGATTTTCCCCCCTCCCACGCATAAGAAGAAGAAAACGCATGGATGAAAACTTCAACTAATTAAGTATCCGATCGACCAAAGTGCTGTGTAACCATCTATTTTCCTTCAAATCTGTTTGTGTTTTTATGAAATAAAACTATTGTCACAATTCGTCGATAGCTTTCTCATAAATGTGTATTTGCTTCTTAAACTTTTATGTACTTGTAATTTGTAACTTGTAACCCGTGTGAGTGAAATTTTCCAACAAGTTAAATTTCTTCTACTTCGTATAATATGTTTTATTGATTTTGATTCGCAATTTAGAAGGTGGACCATGGTGCACAATGAGTATGATGCACCTTAAGAACACTAATATATAATTAAAAGAACATTTGGTTACGTA

Coding sequence (CDS)

ATGGGCTTGGTTCTTAACTTGTTATCCCAATTCAAAACACAAATGGCAACTTCAAAGGCTTTTGTTCTTGTCATCCTTTTTGCTGCAACTCTTCTCATTTCCTCTGACAACGTCTCAGCTCGTGAACTTGTTCACCCTAACTCCACTCCACAGACACATGCTTCTACAGCTGGATATGATGGTTCTTCACCTCACCATTCCTACGACGATGATCCAACCCAGGAACCGATTTTCCCCCCTCCCACGCATAAGAAGAAGAAAACGCATGGATGA

Protein sequence

MGLVLNLLSQFKTQMATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQEPIFPPPTHKKKKTHG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo15855Spo15855gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo15855.1Spo15855.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15855.1.utr5p.1Spo15855.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15855.1.CDS.2Spo15855.1.CDS.2CDS
Spo15855.1.CDS.1Spo15855.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15855.1.utr3p.1Spo15855.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15855.1.exon.2Spo15855.1.exon.2exon
Spo15855.1.exon.1Spo15855.1.exon.1exon


Homology
[Close]
BLAST of Spo15855.1 vs. NCBI nr
Match: gi|902146648|gb|KNA05087.1| (hypothetical protein SOVF_193630 [Spinacia oleracea])

HSP 1 Score: 151.0 bits (380), Expect = 1.000e-33
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

		  

Query: 15 MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ 74
          MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ
Sbjct: 1  MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ 60

Query: 75 EPIFPPPTHKKKKTHG 91
          EPIFPPPTHKKKKTHG
Sbjct: 61 EPIFPPPTHKKKKTHG 76
[Close]
BLAST of Spo15855.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCU2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_193630 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 7.000e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

		  

Query: 15 MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ 74
          MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ
Sbjct: 1  MATSKAFVLVILFAATLLISSDNVSARELVHPNSTPQTHASTAGYDGSSPHHSYDDDPTQ 60

Query: 75 EPIFPPPTHKKKKTHG 91
          EPIFPPPTHKKKKTHG
Sbjct: 61 EPIFPPPTHKKKKTHG 76
The following BLAST results are available for this feature:
BLAST of Spo15855.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902146648|gb|KNA05087.1|1.0e-33100.hypothetical protein SOVF_1936... [more]
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BLAST of Spo15855.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QCU2_SPIOL7.0e-34100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo15855.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15855.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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