Spo18571.1 (mRNA) | SpinachBase

Overview


Name	Spo18571.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Histone H2A
Location	chr4 : 75213312 .. 75214247 (-)
Sequence length	453

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAGCAGGAAAGGGGAAGAAGGGAGCTGGAGGAAGGAAAGGAGGTGGTCCGAAGAAGAAGCCAGTTACAAGGTCGGTAAGAGCTGGATTGCAGTTTCCAGTTGGTAGGATCGGAAGGTTTTTGAAGAAAGGGAGGTATGCTCAACGTGTTGGTACTGGTGCCCCCGTTTACTTGGCTGCTGTTCTTGAGTACCTTGCTGCTGAGGTACTCCTTCAATTTCCATCTCTTTTGGTTGTTTTAATTTAATTTTGACTTTTTGAAATTTCGTTTGAATGAGTTTGGAGGTTTTGATTTGGGGGTTTTGGTTGTTTGGTGTTGTATTTCTGTTGGTCGATTTTGGATTAAGTTAGTTGTAATGGTTTTTGCCTTTGGTGACGAGATTTGGAATGTTTAATGTAAGGGTTTGGATTGGTTTGAATTTATGATTTGGGTTTTTTTTGTTGTTGATTTTACATTTTGGTTGCTTGATTTTGGAATACAAATGATTTTTATGGTTATTGATTTATGCAGATCTCTTATGGATTCTGAGATGATACTTGTATTTTCGTTCTTAATTACAAATGTAAAAAATGGATGGTTGATTTGGCTAATCCGTTGCCTGTAGATTGACACCTGCCTTAAGCCTTTGCCCTGGATATCAATAAATTAGATTTGATTGCTAATTTCTATTGTCCTGTGTTTGTGTAGGTGTTGGAATTGGCTGGAAATGCTGCAAGGGACAACAAGAAGACCAGAATCATCCCAAGGCATGTTTTACTAGCTGTGAGAAACGATGATGAGCTCGGAAAGCTTCTTGCCGGAGTCACCATTGCACATGGAGGAGTTCTTCCAAACATAAACCCAGTGTTGTTGCCAAAGAAGGTTGCAGAGAAGTCTCCAAAGGAGCCCAAATCTCCTTCTAAGGCTACCAAGTCCCCCAAGAAAGCATAG

mRNA sequence

ATGGATTCAGCAGGAAAGGGGAAGAAGGGAGCTGGAGGAAGGAAAGGAGGTGGTCCGAAGAAGAAGCCAGTTACAAGGTCGGTAAGAGCTGGATTGCAGTTTCCAGTTGGTAGGATCGGAAGGTTTTTGAAGAAAGGGAGGTATGCTCAACGTGTTGGTACTGGTGCCCCCGTTTACTTGGCTGCTGTTCTTGAGTACCTTGCTGCTGAGGTGTTGGAATTGGCTGGAAATGCTGCAAGGGACAACAAGAAGACCAGAATCATCCCAAGGCATGTTTTACTAGCTGTGAGAAACGATGATGAGCTCGGAAAGCTTCTTGCCGGAGTCACCATTGCACATGGAGGAGTTCTTCCAAACATAAACCCAGTGTTGTTGCCAAAGAAGGTTGCAGAGAAGTCTCCAAAGGAGCCCAAATCTCCTTCTAAGGCTACCAAGTCCCCCAAGAAAGCATAG

Coding sequence (CDS)

ATGGATTCAGCAGGAAAGGGGAAGAAGGGAGCTGGAGGAAGGAAAGGAGGTGGTCCGAAGAAGAAGCCAGTTACAAGGTCGGTAAGAGCTGGATTGCAGTTTCCAGTTGGTAGGATCGGAAGGTTTTTGAAGAAAGGGAGGTATGCTCAACGTGTTGGTACTGGTGCCCCCGTTTACTTGGCTGCTGTTCTTGAGTACCTTGCTGCTGAGGTGTTGGAATTGGCTGGAAATGCTGCAAGGGACAACAAGAAGACCAGAATCATCCCAAGGCATGTTTTACTAGCTGTGAGAAACGATGATGAGCTCGGAAAGCTTCTTGCCGGAGTCACCATTGCACATGGAGGAGTTCTTCCAAACATAAACCCAGTGTTGTTGCCAAAGAAGGTTGCAGAGAAGTCTCCAAAGGAGCCCAAATCTCCTTCTAAGGCTACCAAGTCCCCCAAGAAAGCATAG

Protein sequence

MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPVLLPKKVAEKSPKEPKSPSKATKSPKKA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo18571	Spo18571	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo18571.1	Spo18571.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18571.1.CDS.2	Spo18571.1.CDS.2	CDS
Spo18571.1.CDS.1	Spo18571.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo18571.1.exon.2	Spo18571.1.exon.2	exon
Spo18571.1.exon.1	Spo18571.1.exon.1	exon

Homology

[Close]

BLAST of Spo18571.1 vs. NCBI nr
Match: gi|902232644|gb|KNA22742.1| (hypothetical protein SOVF_031700 [Spinacia oleracea])

HSP 1 Score: 282.3 bits (721), Expect = 4.800e-73
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL
Sbjct: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKKVAEKSPKEPKSPSKATKSPKKA
Sbjct: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 150

[Close]

BLAST of Spo18571.1 vs. NCBI nr
Match: gi|1012220569|ref|XP_015935637.1| (PREDICTED: histone H2A [Arachis duranensis])

HSP 1 Score: 261.2 bits (666), Expect = 1.100e-66
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD+A K KKGAGGRKGGGPKKKPV+RSV+AGLQFPVGRIGR+LKKGRY+QRVGTGAPVYL
Sbjct: 1   MDAASKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKK AEK+PKE KSPSKATKSPKKA
Sbjct: 121 NPVLLPKKTAEKAPKEKKSPSKATKSPKKA 150

[Close]

BLAST of Spo18571.1 vs. NCBI nr
Match: gi|1021559830|ref|XP_016171199.1| (PREDICTED: histone H2A [Arachis ipaensis])

HSP 1 Score: 261.2 bits (666), Expect = 1.100e-66
Identity = 138/150 (92.00%), Postives = 145/150 (96.67%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD+A K KKGAGGRKGGGPKKKPV+RSV+AGLQFPVGRIGR+LKKGRY+QRVGTGAPVYL
Sbjct: 1   MDAASKVKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKK AEK+PKE KSPSKATKSPKKA
Sbjct: 121 NPVLLPKKTAEKAPKETKSPSKATKSPKKA 150

[Close]

BLAST of Spo18571.1 vs. NCBI nr
Match: gi|920701047|gb|KOM44272.1| (hypothetical protein LR48_Vigan05g187700 [Vigna angularis])

HSP 1 Score: 259.2 bits (661), Expect = 4.400e-66
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD+ GK KKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGR+LKKGRYAQRVGTGAPVYL
Sbjct: 1   MDAGGKIKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKK  EK+ KEPKSPSKATKSPKKA
Sbjct: 121 NPVLLPKK-TEKASKEPKSPSKATKSPKKA 149

[Close]

BLAST of Spo18571.1 vs. NCBI nr
Match: gi|950957032|ref|XP_014496972.1| (PREDICTED: histone H2A [Vigna radiata var. radiata])

HSP 1 Score: 259.2 bits (661), Expect = 4.400e-66
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD+ GK KKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGR+LKKGRYAQRVGTGAPVYL
Sbjct: 1   MDTGGKIKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKK  EK+ KEPKSPSKATKSPKKA
Sbjct: 121 NPVLLPKK-TEKASKEPKSPSKATKSPKKA 149

[Close]

BLAST of Spo18571.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RV94_SPIOL (Histone H2A OS=Spinacia oleracea GN=SOVF_031700 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.400e-73
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL
Sbjct: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKKVAEKSPKEPKSPSKATKSPKKA
Sbjct: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 150

[Close]

BLAST of Spo18571.1 vs. UniProtKB/TrEMBL
Match: A0A0L9UNW1_PHAAN (Histone H2A OS=Phaseolus angularis GN=LR48_Vigan05g187700 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.000e-66
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD+ GK KKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGR+LKKGRYAQRVGTGAPVYL
Sbjct: 1   MDAGGKIKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKK  EK+ KEPKSPSKATKSPKKA
Sbjct: 121 NPVLLPKK-TEKASKEPKSPSKATKSPKKA 149

[Close]

BLAST of Spo18571.1 vs. UniProtKB/TrEMBL
Match: A0A0S3SGE5_PHAAN (Histone H2A OS=Vigna angularis var. angularis GN=Vigan.07G052800 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.000e-66
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD+ GK KKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGR+LKKGRYAQRVGTGAPVYL
Sbjct: 1   MDAGGKIKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKK  EK+ KEPKSPSKATKSPKKA
Sbjct: 121 NPVLLPKK-TEKASKEPKSPSKATKSPKKA 149

[Close]

BLAST of Spo18571.1 vs. UniProtKB/TrEMBL
Match: A0A0S3SGH4_PHAAN (Histone H2A OS=Vigna angularis var. angularis GN=Vigan.07G052700 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.000e-66
Identity = 140/150 (93.33%), Postives = 143/150 (95.33%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD  GK KKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGR+LKKGRYAQRVGTGAPVYL
Sbjct: 1   MDGGGKIKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKK  EK+ KEPKSPSKATKSPKKA
Sbjct: 121 NPVLLPKK-TEKASKEPKSPSKATKSPKKA 149

[Close]

BLAST of Spo18571.1 vs. UniProtKB/TrEMBL
Match: A0A0L9UND9_PHAAN (Histone H2A OS=Phaseolus angularis GN=LR48_Vigan05g187800 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.000e-66
Identity = 140/150 (93.33%), Postives = 143/150 (95.33%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD  GK KKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGR+LKKGRYAQRVGTGAPVYL
Sbjct: 1   MDGGGKIKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKK  EK+ KEPKSPSKATKSPKKA
Sbjct: 121 NPVLLPKK-TEKASKEPKSPSKATKSPKKA 149

[Close]

BLAST of Spo18571.1 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 2.800e-65
Identity = 134/150 (89.33%), Postives = 142/150 (94.67%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           M++AGK KKG GGRKGG P+KK VTRSV+AGLQFPVGRIGR+LKKGRYAQRVGTGAPVYL
Sbjct: 1   METAGKAKKGFGGRKGG-PRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKKTRIIPRH+LLAVRND+ELGKLLAGVT AHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPKK AEK+ KEPKSPSKA KSPKKA
Sbjct: 121 NPVLLPKKTAEKAAKEPKSPSKAGKSPKKA 149

[Close]

BLAST of Spo18571.1 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.100e-64
Identity = 134/153 (87.58%), Postives = 141/153 (92.16%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD+  K KKGAG RKGGGPKKKPV+RSV+AGLQFPVGRIGRFLKKGRYAQRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPK---KVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPK   K A  + KEPKSP+KATKSPKKA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

[Close]

BLAST of Spo18571.1 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.200e-62
Identity = 128/150 (85.33%), Postives = 137/150 (91.33%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD++ K KKGAGGRKGGGP+KK VTRSVRAGLQFPVGR+GRFLKKGRYAQRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RI PRH+LLAVRND+ELGKLLAGVTIA+GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNI 120

Query: 121 NPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           NPVLLPK+    +   PKSPSKA KSPKKA
Sbjct: 121 NPVLLPKRKENAAASTPKSPSKAKKSPKKA 150

[Close]

BLAST of Spo18571.1 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.900e-62
Identity = 132/153 (86.27%), Postives = 139/153 (90.85%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYL 60
           MD++ K KKGAGGRKGGGP+KK VTRS+RAGLQFPVGRIGR+LKKGRYAQRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNI 120
           AAVLEYLAAEVLELAGNAARDNKK RIIPRHVLLAVRND+ELGKLLAGVTIAHGGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKVAEKS--PKEPKSPS-KATKSPKKA 151
           NPVLLPKK    +   KEPKSP  KA KSPKKA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

[Close]

BLAST of Spo18571.1 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.100e-61
Identity = 129/152 (84.87%), Postives = 137/152 (90.13%), Query Frame = 1

		  
Query: 3   SAGKGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAA 62
           + GKGKKGA GRK GGP+KK V+RSV+AGLQFPVGRIGR+LKKGRYAQ VGTGAPVYLAA
Sbjct: 8   AGGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAA 67

Query: 63  VLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINP 122
           VLEYLAAEVLELAGNAARDNKKTRIIPRHVLLA+RND+ELGKLL GVTIAHGGVLPNINP
Sbjct: 68  VLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINP 127

Query: 123 VLLPKKVAEKS----PKEPKSPSKATKSPKKA 151
           VLLPKK AEK+     KE KSP KA KSPKKA
Sbjct: 128 VLLPKKTAEKASSGGSKEAKSPKKAAKSPKKA 159

[Close]

BLAST of Spo18571.1 vs. TAIR (Arabidopsis)
Match: AT5G02560.2 (histone H2A 12)

HSP 1 Score: 217.6 bits (553), Expect = 5.100e-57
Identity = 127/177 (71.75%), Postives = 138/177 (77.97%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRK-GGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVY 60
           MDS  K KKGA GR+ GGGPKKKPV+RSV++GLQFPVGRIGR+LKKGRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKTRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKK RIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDDELGKLLAGVTIAHGGVLPNINPVLLPKK--VAEKSPKEPKSPSKATKSPKKA 151
           VRND+ELG LL GVTIAHGGVLPNINP+LLPKK   A  + K PKSPSKATKSPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of Spo18571.1 vs. TAIR (Arabidopsis)
Match: AT5G59870.1 (histone H2A 6)

HSP 1 Score: 206.5 bits (524), Expect = 1.200e-53
Identity = 116/151 (76.82%), Postives = 129/151 (85.43%), Query Frame = 1

		  
Query: 1   MDSAGKGKKGAGGRKG-GGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVY 60
           M+S GK KK  GGRK  G PK K V++S++AGLQFPVGRI RFLKKGRYAQR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RND+ELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKVAEKSPKEPKSPSKATKSPKKA 151
           IN VLLPKK A K P E K+     KSPKKA
Sbjct: 121 INSVLLPKKSATK-PAEEKATKSPVKSPKKA 150

[Close]

BLAST of Spo18571.1 vs. TAIR (Arabidopsis)
Match: AT5G27670.1 (histone H2A 7)

HSP 1 Score: 192.6 bits (488), Expect = 1.800e-49
Identity = 109/145 (75.17%), Postives = 122/145 (84.14%), Query Frame = 1

		  
Query: 6   KGKKGAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLE 65
           K  +GAGGRKGG  +KK V++SV+AGLQFPVGRI R+LKKGRYA R G+GAPVYLAAVLE
Sbjct: 9   KPTRGAGGRKGGD-RKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLE 68

Query: 66  YLAAEVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPVLL 125
           YLAAEVLELAGNAARDNKK RI PRH+ LA+RND+ELG+LL GVTIA GGVLPNINPVLL
Sbjct: 69  YLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLL 128

Query: 126 PKKVAEKSPKEPKSPSKATKSPKKA 151
           PKK    S +  K  + ATKSPKKA
Sbjct: 129 PKKSTASSSQAEK--ASATKSPKKA 150

[Close]

BLAST of Spo18571.1 vs. TAIR (Arabidopsis)
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 179.5 bits (454), Expect = 1.500e-45
Identity = 93/125 (74.40%), Postives = 103/125 (82.40%), Query Frame = 1

		  
Query: 10  GAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLAA 69
           G G   G G  KK  TRS +AGLQFPVGRI RFLKKG+YA+RVG GAPVYLAAVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPVLLPKKV 129
           EVLELAGNAARDNKKTRI+PRH+ LAVRND+EL KLL  VTIA+GGV+PNI+ +LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

Query: 130 AEKSP 135
               P
Sbjct: 123 GASKP 127

[Close]

BLAST of Spo18571.1 vs. TAIR (Arabidopsis)
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 177.6 bits (449), Expect = 5.900e-45
Identity = 92/127 (72.44%), Postives = 104/127 (81.89%), Query Frame = 1

		  
Query: 10  GAGGRKGGGPKKKPVTRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLAA 69
           G G + G G  KK  +RS +AGLQFPVGRI RFLK G+YA+RVG GAPVYLAAVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVLELAGNAARDNKKTRIIPRHVLLAVRNDDELGKLLAGVTIAHGGVLPNINPVLLPKKV 129
           EVLELAGNAARDNKKTRI+PRH+ LAVRND+EL KLL  VTIA+GGV+PNI+ +LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 130 AEKSPKE 137
               P E
Sbjct: 123 GSSKPTE 129

The following BLAST results are available for this feature:

BLAST of Spo18571.1 vs. NCBI nr
BLAST of Spo18571.1 vs. UniProtKB/TrEMBL
BLAST of Spo18571.1 vs. ExPASy Swiss-Prot
BLAST of Spo18571.1 vs. TAIR (Arabidopsis)

BLAST of Spo18571.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902232644\|gb\|KNA22742.1\|	4.8e-73	100.	hypothetical protein SOVF_0317...	[more]
gi\|1012220569\|ref\|XP_015935637.1\|	1.1e-66	92.0	PREDICTED: histone H2A [Arachi...	[more]
gi\|1021559830\|ref\|XP_016171199.1\|	1.1e-66	92.0	PREDICTED: histone H2A [Arachi...	[more]
gi\|920701047\|gb\|KOM44272.1\|	4.4e-66	93.3	hypothetical protein LR48_Viga...	[more]
gi\|950957032\|ref\|XP_014496972.1\|	4.4e-66	93.3	PREDICTED: histone H2A [Vigna ...	[more]

BLAST of Spo18571.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RV94_SPIOL	3.4e-73	100.	Histone H2A OS=Spinacia olerac...	[more]
A0A0L9UNW1_PHAAN	3.0e-66	93.3	Histone H2A OS=Phaseolus angul...	[more]
A0A0S3SGE5_PHAAN	3.0e-66	93.3	Histone H2A OS=Vigna angularis...	[more]
A0A0S3SGH4_PHAAN	4.0e-66	93.3	Histone H2A OS=Vigna angularis...	[more]
A0A0L9UND9_PHAAN	4.0e-66	93.3	Histone H2A OS=Phaseolus angul...	[more]

BLAST of Spo18571.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
H2A_PETCR	2.8e-65	89.3	Histone H2A OS=Petroselinum cr...	[more]
H2A_EUPES	3.1e-64	87.5	Histone H2A OS=Euphorbia esula...	[more]
H2A1_PEA	2.2e-62	85.3	Histone H2A.1 OS=Pisum sativum...	[more]
H2A2_MEDTR	2.9e-62	86.2	Probable histone H2A.2 OS=Medi...	[more]
H2A_MAIZE	1.1e-61	84.8	Histone H2A OS=Zea mays PE=2 S...	[more]

BLAST of Spo18571.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G02560.2	5.1e-57	71.7	histone H2A 12	[more]
AT5G59870.1	1.2e-53	76.8	histone H2A 6	[more]
AT5G27670.1	1.8e-49	75.1	histone H2A 7	[more]
AT1G51060.1	1.5e-45	74.4	histone H2A 10	[more]
AT4G27230.1	5.9e-45	72.4	histone H2A 2	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 22..44 score: 8.9E-52coord: 51..66 score: 8.9E-52coord: 66..79 score: 8.9E-52coord: 108..126 score: 8.9E-52coord: 80..94 score: 8.9
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 11..131 score: 4.2
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 21..97 score: 3.6
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 14..129 score: 6.7
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 13..131 score: 1.92
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 1..150 score: 3.1E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity