Spo22530.1 (mRNA) | SpinachBase

Overview


Name	Spo22530.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA-binding CRS1 / YhbY domain protein, putative
Location	chr4 : 78491366 .. 78494156 (+)
Sequence length	1052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACACTACTAACGTAAATGTTATATAATAGAAATAAAACTAGAAGTTATATAACCTCCAATATTCCGTATTTCGGAATTCGGATAATAAAAATGGCGACCACCGCAGCACTAACCCAATTCCTCCTCCACCGCCACATCCTCCGCCCACTCTGCCTTTCAACCACCGTCTCATTCTCTCTGTTCCACAACCCAAAACTATCTATCTCTCTCTTAAAAACTCAACCACACCCACTTTCTTCATTTCCACCCCTCTTTTGCTCCCTTGAAGAAAACAAAAACCTTGTAGATGTCGAGAATTTGAAGGAAGATGAAGCAACCTCAGAACCTAAAATCCTTAAAATTAAGGAAGGAGAAGTGCCCAATTTAACAGTTAAGGAAAAGAAGGATCTTTGTTCTTATGCAAATAGTCTTGGTGATAAGCTCAAGTCTCAGCAAGTGGGCAAATCTGGTGTTACGGATAATGTTGTTTTTGCATTGTCTGAAACTCTCGAGGCTAATGAACTTCTCAAGGTTTAATTTGATTAATTATTTCTTGTTTTATGTTTTTAAGTGTGGTTTTGTTATTTTGGATGATATAAATTGTGAAATTTGTGTGTTTGATTTTTTTCTCCAAATATGGGTGAATTATGAGTTTAATGATTAATTATACTTGAAAATTTGTTTGAATTTGACTTTGAGTTTGTTTGATTTTAGTTGTTTGATTGGGGTTGTAAATTGAAGTTCAGGGGGTTAGGATTTTGCTGTTTGGTCGAATTTTGTTGATTGTAATGGTTGTGAGATTAGAAAATTGATATTTTTTGTATGGAGCACACAAAAGAAAGAAGCTTCTGGATTTGAGGGAGAACAATCGTGTTATCAAGTTTTATTCTGTATGGAAAGGGAGAATAATTGGCTTTTCGAGTTTTATTCTGTATGGAGTACATTGAAATGGTAAGGGAGTTACATTTTAGAGCATGCTTGAAGTAAGACGCGGGAATACATTAGGGGGGTAAGACTAATTAAAGTAAAGGTGGGGTTGTCACCGGTCAAGGTGGAGGTGGTGGTTATATAAAAGGCTTGGGTGGAGAAACCAATAGTGGCTAGCAGTTAATTTCCGAGGTTTGTAAATGGTGTTATATCTCGATTACATATTTCGTAATTACCCTGAATTTGTAGAGGGGTTTGTGAAGTTTGAAAAGTCGGGAGATTGTTAGGGAATTTTAAGCCTTTGGGAGTGTCATTTGTGATTCAATTACCTCTAGTACTTGTACTTTCTGGAGAAATCATCCCCATTTAGGTCTAGGGATTATTTGGGTATATTTAAGGATTTGGGAGTGGGATTAGTTAGTACTTAGTACTGTTACCTTCTCTAGAAACTTATTATTCATGTTTAGGACTCGAGTAAGGGGGACTTTTTGGGGAAATTAAGGCTTTGGTTGTGTGATTAGCTAGTACCGGTATTTTCCCGGTATACCGTATCTTGGGTGAAGAGTAATTTATAAATATAGTTTGTGTGTAATCAGTTCTCCCAACTATATGATAGTAGTAGCTTTTACAATTGGTCTTATGACTCTTGCCCTCTAATTGAATTATCTTGTTTCAGCATTGGTTTGTTTGTTCAATATTTAGAGTGGTATAAGTATTCTGCTGTTTGATTTCATTAAGCTAATATGGGATTGAGGTAAAAGTAGAAAGATTGGTTTGTCTGGTTCATTCTACATTGTATCTGGTTAATTGTTGCAAATTCAAGCCTTGTTCATTTCATGAGATGATGTGTTAATGCTGATTAATTTGGTTTCTTTTGCGATACTGTTTCTGCATTGTGTGTAAGGCCATAATCCTGGCCTTATTATGGATAAAGAAATGCTGAATTTTCTGTGTTCTTACTTGTTAACCAAGTTAATGTATTATGTATGGAAACGTAAGAACACTCCCCCCCTATCTGTAAAAGCAGCAACCTAAACTTGAAATTGAACCGAGTTACATAAACGAGGACTTGAAAAACAAGAAATGAGTGATGCACCTGTCAATTGCTGTGGCTATTTCAGATGTTTTTGTTAGATATTGTCATCGCTTTTGTTCCGACATATGCGACAGACAATTTGTAGTTGATTTTGGTAATCTTATCTCCTTTTTAATGAGCCTTGTTGCTAATTGTATGGGTAAAACAGCTTAAGATACATAGAACCTGCCCAGGGGAGATGGATGATATTGTTAAGCAACTAGAGATTGCTACTGCATCTGTTGTTGTAGGGCAGATTGGCCGAACAGTCATATTTTATCGACCAAGCCTTACAAAGTTAGAGGCCGAGAAGAAGAAAGAGCGTGCTCGTAAGCTTTTTGCTCAGAAGAGGGAGAGGTCCCATGCCGCTTTCATGGTAAAGAAAAATAGTCATAGTACACCCAATATCTGTGATGTAGCAATTCCTTTATGTACTGTATTAGTTTCTGAAAAGTTCTCTATGTGAAAAATGCAGAAAAGAGAACAAGAGCCAAGACAGCCAGGAGGCACTGGACGAGGTCGGTTCGGAAATCGACGATCTGAGAAGGTTGCCTCGTAGGTTAACTGTTTGCTATTGTAGCTCAAATTAGTAGCACCCCCTTTGTTATTAGTGTAGAATGTAGATTCATGTTTATGCTACTTTTTTGTAAAATTTTGAGTGTCTAGAATCCTGAGAAATGCTTATGTGCTTCTTTAAACTGAATCCTTTTTTGTTTATAAGAAATGAAATTATTTTGAGCCGAACGAGTGCGAGCCTCTATGAAAAAAACTCATTGTAAATAGTTCCACACTCATCTTTGGGCAAAGT

mRNA sequence

TTACACTACTAACGTAAATGTTATATAATAGAAATAAAACTAGAAGTTATATAACCTCCAATATTCCGTATTTCGGAATTCGGATAATAAAAATGGCGACCACCGCAGCACTAACCCAATTCCTCCTCCACCGCCACATCCTCCGCCCACTCTGCCTTTCAACCACCGTCTCATTCTCTCTGTTCCACAACCCAAAACTATCTATCTCTCTCTTAAAAACTCAACCACACCCACTTTCTTCATTTCCACCCCTCTTTTGCTCCCTTGAAGAAAACAAAAACCTTGTAGATGTCGAGAATTTGAAGGAAGATGAAGCAACCTCAGAACCTAAAATCCTTAAAATTAAGGAAGGAGAAGTGCCCAATTTAACAGTTAAGGAAAAGAAGGATCTTTGTTCTTATGCAAATAGTCTTGGTGATAAGCTCAAGTCTCAGCAAGTGGGCAAATCTGGTGTTACGGATAATGTTGTTTTTGCATTGTCTGAAACTCTCGAGGCTAATGAACTTCTCAAGCTTAAGATACATAGAACCTGCCCAGGGGAGATGGATGATATTGTTAAGCAACTAGAGATTGCTACTGCATCTGTTGTTGTAGGGCAGATTGGCCGAACAGTCATATTTTATCGACCAAGCCTTACAAAGTTAGAGGCCGAGAAGAAGAAAGAGCGTGCTCGTAAGCTTTTTGCTCAGAAGAGGGAGAGGTCCCATGCCGCTTTCATGAAAAGAGAACAAGAGCCAAGACAGCCAGGAGGCACTGGACGAGGTCGGTTCGGAAATCGACGATCTGAGAAGGTTGCCTCGTAGGTTAACTGTTTGCTATTGTAGCTCAAATTAGTAGCACCCCCTTTGTTATTAGTGTAGAATGTAGATTCATGTTTATGCTACTTTTTTGTAAAATTTTGAGTGTCTAGAATCCTGAGAAATGCTTATGTGCTTCTTTAAACTGAATCCTTTTTTGTTTATAAGAAATGAAATTATTTTGAGCCGAACGAGTGCGAGCCTCTATGAAAAAAACTCATTGTAAATAGTTCCACACTCATCTTTGGGCAAAGT

Coding sequence (CDS)

ATGTTATATAATAGAAATAAAACTAGAAGTTATATAACCTCCAATATTCCGTATTTCGGAATTCGGATAATAAAAATGGCGACCACCGCAGCACTAACCCAATTCCTCCTCCACCGCCACATCCTCCGCCCACTCTGCCTTTCAACCACCGTCTCATTCTCTCTGTTCCACAACCCAAAACTATCTATCTCTCTCTTAAAAACTCAACCACACCCACTTTCTTCATTTCCACCCCTCTTTTGCTCCCTTGAAGAAAACAAAAACCTTGTAGATGTCGAGAATTTGAAGGAAGATGAAGCAACCTCAGAACCTAAAATCCTTAAAATTAAGGAAGGAGAAGTGCCCAATTTAACAGTTAAGGAAAAGAAGGATCTTTGTTCTTATGCAAATAGTCTTGGTGATAAGCTCAAGTCTCAGCAAGTGGGCAAATCTGGTGTTACGGATAATGTTGTTTTTGCATTGTCTGAAACTCTCGAGGCTAATGAACTTCTCAAGCTTAAGATACATAGAACCTGCCCAGGGGAGATGGATGATATTGTTAAGCAACTAGAGATTGCTACTGCATCTGTTGTTGTAGGGCAGATTGGCCGAACAGTCATATTTTATCGACCAAGCCTTACAAAGTTAGAGGCCGAGAAGAAGAAAGAGCGTGCTCGTAAGCTTTTTGCTCAGAAGAGGGAGAGGTCCCATGCCGCTTTCATGAAAAGAGAACAAGAGCCAAGACAGCCAGGAGGCACTGGACGAGGTCGGTTCGGAAATCGACGATCTGAGAAGGTTGCCTCGTAG

Protein sequence

MLYNRNKTRSYITSNIPYFGIRIIKMATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQPHPLSSFPPLFCSLEENKNLVDVENLKEDEATSEPKILKIKEGEVPNLTVKEKKDLCSYANSLGDKLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQIGRTVIFYRPSLTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPRQPGGTGRGRFGNRRSEKVAS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo22530	Spo22530	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo22530.1	Spo22530.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22530.1.exon.1	Spo22530.1.exon.1	exon
Spo22530.1.exon.2	Spo22530.1.exon.2	exon
Spo22530.1.exon.3	Spo22530.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22530.1.utr5p.1	Spo22530.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22530.1.CDS.1	Spo22530.1.CDS.1	CDS
Spo22530.1.CDS.2	Spo22530.1.CDS.2	CDS
Spo22530.1.CDS.3	Spo22530.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22530.1.utr3p.1	Spo22530.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo22530.1 vs. NCBI nr
Match: gi|902238263|gb|KNA25096.1| (hypothetical protein SOVF_009630 [Spinacia oleracea])

HSP 1 Score: 444.1 bits (1141), Expect = 1.700e-121
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 1


		  
Query: 26  MATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQPHPLSSFPPLFCSLEE 85
           MATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQ HPLSSFPPLFCSLEE
Sbjct: 1   MATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQTHPLSSFPPLFCSLEE 60

Query: 86  NKNLVDVENLKEDEATSEPKILKIKEGEVPNLTVKEKKDLCSYANSLGDKLKSQQVGKSG 145
           NKNLVDVENLKEDEATSEPKILKIKEGEVPNLTVKEKKDLCSYANSLGDKLKSQQVGKSG
Sbjct: 61  NKNLVDVENLKEDEATSEPKILKIKEGEVPNLTVKEKKDLCSYANSLGDKLKSQQVGKSG 120

Query: 146 VTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQIGRTVIFYRPS 205
           VTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQIGRTVIFYRPS
Sbjct: 121 VTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQIGRTVIFYRPS 180

Query: 206 LTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPRQPGGTGRGRFGNRRSEKVAS 262
           LTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPRQPGGTGRG+FGNRRSEKVAS
Sbjct: 181 LTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPRQPGGTGRGQFGNRRSEKVAS 236

[Close]

BLAST of Spo22530.1 vs. NCBI nr
Match: gi|731358495|ref|XP_010690781.1| (PREDICTED: uncharacterized protein LOC104904275 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 303.9 bits (777), Expect = 2.700e-79
Identity = 174/247 (70.45%), Postives = 199/247 (80.57%), Query Frame = 1


		  
Query: 26  MATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPK-LSISLLKTQPHPLSSFPPLFCSLE 85
           MATTA + Q  LHRHI RPLC    V FSL H PK LS SLLK Q HP    PPLFC+LE
Sbjct: 1   MATTATVAQIFLHRHIFRPLC---AVPFSLLHPPKKLSFSLLKPQKHPF--LPPLFCTLE 60

Query: 86  ENKNLVDVENLKEDEATSEPKI------LKIKE----GEVPNLTVKEKKDLCSYANSLGD 145
           ENKNL + ++ K++E     KI      +KI E     E+PNLTVKEKKDLCS+ANSLGD
Sbjct: 61  ENKNL-NFDDFKDNEENPVTKIQEENPVVKIHEIKEYKELPNLTVKEKKDLCSFANSLGD 120

Query: 146 KLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQ 205
           KLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCPGEM+D+VKQLE+AT SVVVGQ
Sbjct: 121 KLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCPGEMEDVVKQLELATGSVVVGQ 180

Query: 206 IGRTVIFYRPSLTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPRQPGGTGRGRFGNR 262
           IGRTVIFYRPS+TKLEAEKK+E +RK+FAQ+RE++ AAFMKREQ PR+P   GRG++G+R
Sbjct: 181 IGRTVIFYRPSITKLEAEKKREHSRKVFAQRREKAQAAFMKREQLPRRP---GRGQYGSR 238

[Close]

BLAST of Spo22530.1 vs. NCBI nr
Match: gi|697169984|ref|XP_009593902.1| (PREDICTED: uncharacterized protein LOC104090505 [Nicotiana tomentosiformis])

HSP 1 Score: 178.7 bits (452), Expect = 1.300e-41
Identity = 122/256 (47.66%), Postives = 168/256 (65.62%), Query Frame = 1


		  
Query: 24  IKMATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQPHPL---------- 83
           + ++++++ +Q ++   +LRP   ++ +SFS F   K S+SLL  Q   L          
Sbjct: 4   VMLSSSSSSSQHMVFHRLLRP---ASILSFSFF---KQSLSLLPHQTTLLCPITINNSSS 63

Query: 84  --------SSFPPLFCS----LEENKNLVDVENLKED-EATSEPKILKIKEGEVPNLTVK 143
                   S+ P L  +    LE  +++ D E  KE+ E T+ P +   ++ E+P+LT K
Sbjct: 64  CFLRSRTFSNLPVLVSNSQALLESTEDVEDKEIAKENGEVTAAPSLRVKEKKELPSLTGK 123

Query: 144 EKKDLCSYANSLGDKLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCP-GEMDDI 203
           EKK+L SYA+SLG KLKSQQVGKSGVTD+V+FAL ETLEANELLKLKIH TCP GE+DD+
Sbjct: 124 EKKELASYAHSLGKKLKSQQVGKSGVTDSVIFALDETLEANELLKLKIHGTCPGGELDDV 183

Query: 204 VKQLEIATASVVVGQIGRTVIFYRPSLTKLEAEKKKERARKLFAQKRERSHAAFMKREQE 256
           VK LE AT SVVVGQIGRTVI YRPS+TKL+AE+KK++A+  F +K++  +AA    E +
Sbjct: 184 VKHLEEATGSVVVGQIGRTVILYRPSVTKLKAEEKKKQAQNAFMRKKQ--YAAKQSFESK 243

[Close]

BLAST of Spo22530.1 vs. NCBI nr
Match: gi|698532967|ref|XP_009763301.1| (PREDICTED: uncharacterized protein LOC104215241 [Nicotiana sylvestris])

HSP 1 Score: 176.8 bits (447), Expect = 5.000e-41
Identity = 122/256 (47.66%), Postives = 167/256 (65.23%), Query Frame = 1


		  
Query: 24  IKMATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQPHPL---------- 83
           I ++++++ +Q ++   +LRP   +  +SFS     K S+SLL  Q   L          
Sbjct: 4   IMLSSSSSSSQLMVFHRLLRP---APILSFSFL---KQSLSLLPHQTTSLCPITANNSQS 63

Query: 84  --------SSFPPLFCS----LEENKNLVDVENLKED-EATSEPKILKIKEGEVPNLTVK 143
                   ++ P L  S    LE  +++ D E  KE+ E T+ P++   ++ E+ +LTVK
Sbjct: 64  FYLRSRTFANLPVLVSSSQALLESTEDVEDKEIAKENGEVTAAPRLRVKEKKELLSLTVK 123

Query: 144 EKKDLCSYANSLGDKLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCP-GEMDDI 203
           EKK+L SYA+SLG KLKSQQVGKSGVTD+V+FAL ETLEANELLKLKIH TCP GE+DD+
Sbjct: 124 EKKELASYAHSLGKKLKSQQVGKSGVTDSVIFALDETLEANELLKLKIHGTCPGGELDDV 183

Query: 204 VKQLEIATASVVVGQIGRTVIFYRPSLTKLEAEKKKERARKLFAQKRERSHAAFMKREQE 256
           VK LE AT SVVVGQIGRTVI YRPS+TKL+AE+KK++A+  F +K++  +AA    E +
Sbjct: 184 VKHLEEATGSVVVGQIGRTVILYRPSVTKLKAEEKKKQAQNAFMRKKQ--YAAKQSFESK 243

[Close]

BLAST of Spo22530.1 vs. NCBI nr
Match: gi|460370224|ref|XP_004230954.1| (PREDICTED: uncharacterized protein LOC101264983 [Solanum lycopersicum])

HSP 1 Score: 174.5 bits (441), Expect = 2.500e-40
Identity = 127/262 (48.47%), Postives = 165/262 (62.98%), Query Frame = 1


		  
Query: 29  TAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQP---HP-----LSSFP--- 88
           +++ +   LHR +LRP   +  +SFS     K S+SLL  Q    HP     LSSFP   
Sbjct: 7   SSSSSSMALHR-LLRP---APILSFSFL---KQSLSLLPHQTTSLHPIINNSLSSFPSLR 66

Query: 89  ---------------PLFCS----LEENKNLVDVENLKEDEATSEPKIL----KIKEGEV 148
                          P+ C+    LE ++++ D E +K++E  + P+      KI   ++
Sbjct: 67  THTSIFLRSRTFSNLPISCTSQSLLESSEDVEDEEIVKQNEEVTAPRPSESERKILRAKL 126

Query: 149 PNLTVKEKKDLCSYANSLGDKLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCP- 208
           PNLTVKEKK+L SYA+SLG KLKSQQVGKSGVTD VV AL ETLEANELLKLKIH TCP 
Sbjct: 127 PNLTVKEKKELASYAHSLGKKLKSQQVGKSGVTDTVVMALEETLEANELLKLKIHGTCPG 186

Query: 209 GEMDDIVKQLEIATASVVVGQIGRTVIFYRPSLTKLEAEKKKERARKLFAQKRERSHAAF 256
           GE+DD+VK LE AT SVVVGQIGRTVI YRPSLTK++AE+KK++A+ LF  K+++ +A  
Sbjct: 187 GELDDVVKHLEEATGSVVVGQIGRTVILYRPSLTKMKAEEKKKQAQILFL-KKQKQYAER 246

[Close]

BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S021_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_009630 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 1.200e-121
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 1


		  
Query: 26  MATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQPHPLSSFPPLFCSLEE 85
           MATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQ HPLSSFPPLFCSLEE
Sbjct: 1   MATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQTHPLSSFPPLFCSLEE 60

Query: 86  NKNLVDVENLKEDEATSEPKILKIKEGEVPNLTVKEKKDLCSYANSLGDKLKSQQVGKSG 145
           NKNLVDVENLKEDEATSEPKILKIKEGEVPNLTVKEKKDLCSYANSLGDKLKSQQVGKSG
Sbjct: 61  NKNLVDVENLKEDEATSEPKILKIKEGEVPNLTVKEKKDLCSYANSLGDKLKSQQVGKSG 120

Query: 146 VTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQIGRTVIFYRPS 205
           VTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQIGRTVIFYRPS
Sbjct: 121 VTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQIGRTVIFYRPS 180

Query: 206 LTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPRQPGGTGRGRFGNRRSEKVAS 262
           LTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPRQPGGTGRG+FGNRRSEKVAS
Sbjct: 181 LTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPRQPGGTGRGQFGNRRSEKVAS 236

[Close]

BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJU0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g216670 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.900e-79
Identity = 174/247 (70.45%), Postives = 199/247 (80.57%), Query Frame = 1


		  
Query: 26  MATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPK-LSISLLKTQPHPLSSFPPLFCSLE 85
           MATTA + Q  LHRHI RPLC    V FSL H PK LS SLLK Q HP    PPLFC+LE
Sbjct: 1   MATTATVAQIFLHRHIFRPLC---AVPFSLLHPPKKLSFSLLKPQKHPF--LPPLFCTLE 60

Query: 86  ENKNLVDVENLKEDEATSEPKI------LKIKE----GEVPNLTVKEKKDLCSYANSLGD 145
           ENKNL + ++ K++E     KI      +KI E     E+PNLTVKEKKDLCS+ANSLGD
Sbjct: 61  ENKNL-NFDDFKDNEENPVTKIQEENPVVKIHEIKEYKELPNLTVKEKKDLCSFANSLGD 120

Query: 146 KLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQ 205
           KLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCPGEM+D+VKQLE+AT SVVVGQ
Sbjct: 121 KLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCPGEMEDVVKQLELATGSVVVGQ 180

Query: 206 IGRTVIFYRPSLTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPRQPGGTGRGRFGNR 262
           IGRTVIFYRPS+TKLEAEKK+E +RK+FAQ+RE++ AAFMKREQ PR+P   GRG++G+R
Sbjct: 181 IGRTVIFYRPSITKLEAEKKREHSRKVFAQRREKAQAAFMKREQLPRRP---GRGQYGSR 238

[Close]

BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HKX7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.900e-41
Identity = 105/183 (57.38%), Postives = 135/183 (73.77%), Query Frame = 1


		  
Query: 78  PLFCS----LEENKNLVDVENLKEDEATSEPKIL----KIKEGEVPNLTVKEKKDLCSYA 137
           P+ C+    LE ++++ D E +KE+E  + P++     KI   ++PNLTVKEKK+L SYA
Sbjct: 63  PISCTSQALLESSEDVEDEEIVKENEEVTAPRLSESERKILRAKLPNLTVKEKKELASYA 122

Query: 138 NSLGDKLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCP-GEMDDIVKQLEIATA 197
           +SLG KLKSQQVGKSGVTD VV AL ETLEANELLKLKIH TCP GE+DD+VK LE AT 
Sbjct: 123 HSLGKKLKSQQVGKSGVTDTVVMALEETLEANELLKLKIHGTCPGGELDDVVKHLEEATG 182

Query: 198 SVVVGQIGRTVIFYRPSLTKLEAEKKKERARKLFAQKRER--SHAAFMKREQEPRQPGGT 250
           SVVVGQIGRTVI YRPSLTK++AE+KK++A+ LF +K+++     +F  +   PR    +
Sbjct: 183 SVVVGQIGRTVILYRPSLTKMKAEEKKKQAQILFLKKQKQYAERRSFQDKGPVPRSYARS 242

[Close]

BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Match: K4B3P0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.300e-40
Identity = 127/254 (50.00%), Postives = 161/254 (63.39%), Query Frame = 1


		  
Query: 37  LHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQP---HP-----LSSFP----------- 96
           LHR +LRP   +  +SFS     K S+SLL  Q    HP     LSSFP           
Sbjct: 3   LHR-LLRP---APILSFSFL---KQSLSLLPHQTTSLHPIINNSLSSFPSLRTHTSIFLR 62

Query: 97  -------PLFCS----LEENKNLVDVENLKEDEATSEPKIL----KIKEGEVPNLTVKEK 156
                  P+ C+    LE ++++ D E +K++E  + P+      KI   ++PNLTVKEK
Sbjct: 63  SRTFSNLPISCTSQSLLESSEDVEDEEIVKQNEEVTAPRPSESERKILRAKLPNLTVKEK 122

Query: 157 KDLCSYANSLGDKLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCP-GEMDDIVK 216
           K+L SYA+SLG KLKSQQVGKSGVTD VV AL ETLEANELLKLKIH TCP GE+DD+VK
Sbjct: 123 KELASYAHSLGKKLKSQQVGKSGVTDTVVMALEETLEANELLKLKIHGTCPGGELDDVVK 182

Query: 217 QLEIATASVVVGQIGRTVIFYRPSLTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPR 256
            LE AT SVVVGQIGRTVI YRPSLTK++AE+KK++A+ LF  K+++ +A     + +  
Sbjct: 183 HLEEATGSVVVGQIGRTVILYRPSLTKMKAEEKKKQAQILFL-KKQKQYAERRSFQDKGP 242

[Close]

BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Match: M0ZU34_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003128 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.200e-40
Identity = 105/183 (57.38%), Postives = 134/183 (73.22%), Query Frame = 1


		  
Query: 78  PLFCS----LEENKNLVDVENLKEDEATSEPKIL----KIKEGEVPNLTVKEKKDLCSYA 137
           P+ C+    LE ++++ D E +KE+E  + P+      KI   ++PNLTVKEKK+L SYA
Sbjct: 63  PISCTSQALLESSEDVEDEEIVKENEEVTAPRPSESERKILRAKLPNLTVKEKKELASYA 122

Query: 138 NSLGDKLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCP-GEMDDIVKQLEIATA 197
           +SLG KLKSQQVGKSGVTD VV AL ETLEANELLKLKIH TCP GE+DD+VK LE AT 
Sbjct: 123 HSLGKKLKSQQVGKSGVTDTVVMALEETLEANELLKLKIHGTCPGGELDDVVKHLEEATG 182

Query: 198 SVVVGQIGRTVIFYRPSLTKLEAEKKKERARKLFAQKRER--SHAAFMKREQEPRQPGGT 250
           SVVVGQIGRTVI YRPSLTK++AE+KK++A+ LF +K+++     +F  +   PR    +
Sbjct: 183 SVVVGQIGRTVILYRPSLTKMKAEEKKKQAQILFLKKQKQYAERRSFQDKGPVPRSYARS 242

[Close]

BLAST of Spo22530.1 vs. ExPASy Swiss-Prot
Match: YQEI_BACSU (Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) GN=yqeI PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.200e-8
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 1


		  
Query: 117 LTVKEKKDLCSYANSLGDKLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCPGEM 176
           LT K+K+ L S A+ L       QVGK GV DN++  ++E LEA EL+K+ + + C  + 
Sbjct: 2   LTGKQKRFLRSKAHHLTPIF---QVGKGGVNDNMIKQIAEALEARELIKVSVLQNCEEDK 61

Query: 177 DDIVKQLEIATASVVVGQIGRTVIFYRPSLTKLEAE 213
           +D+ + L   + S +V  IG T++ Y+ S    + E
Sbjct: 62  NDVAEALVKGSRSQLVQTIGNTIVLYKESKENKQIE 94

[Close]

BLAST of Spo22530.1 vs. TAIR (Arabidopsis)
Match: AT2G21350.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 140.6 bits (353), Expect = 1.400e-33
Identity = 104/221 (47.06%), Postives = 135/221 (61.09%), Query Frame = 1


		  
Query: 26  MATTAALTQFLLHRHILR------PLCLSTT-VSFSLF-----HNPKLSISLLKTQPHPL 85
           MAT  + T   L  H+LR      P+CL     S SL      H+  +S SL    P P 
Sbjct: 1   MATAKSSTLTNLIHHLLRHRKPTSPVCLFLRPFSVSLLGRKSSHHAWISSSL--PLPRPY 60

Query: 86  SSFPPL-----FCSLEENK----NLVDVENLKE-----DEATSEPKILKIKEGEVPN--- 145
            SF PL     F S++E++    N+  V +L E      E  SE  ++ ++E    +   
Sbjct: 61  ISFSPLLVPKSFSSVDESEQDEDNVSLVASLNEINDDGQEDGSELTMVSMRENRRSSALE 120

Query: 146 LTVKEKKDLCSYANSLGDKLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCPGEM 205
           L+ KEK+ L SYA+ LGDKLKSQ VGKSGVTD+VV +  ETLE NELLK+KIHRTCPGE+
Sbjct: 121 LSAKEKRKLASYAHHLGDKLKSQLVGKSGVTDSVVLSFVETLEKNELLKVKIHRTCPGEL 180

Query: 206 DDIVKQLEIATASVVVGQIGRTVIFYRPSLTKLEAEKKKER 218
           +D++ +LE AT SV VGQI RTVI YRPS TKL+A++ K+R
Sbjct: 181 EDMILRLEEATGSVSVGQIARTVILYRPSPTKLKADEDKKR 219

[Close]

BLAST of Spo22530.1 vs. TAIR (Arabidopsis)
Match: AT4G39040.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 138.7 bits (348), Expect = 5.300e-33
Identity = 84/175 (48.00%), Postives = 115/175 (65.71%), Query Frame = 1


		  
Query: 83  LEENKNLVDVENLKEDEATSEPKILKIKEGEVPNLTVKEKKDLCSYANSLGDKLKSQQVG 142
           +E+++   +V  + + E  +E    K   G    L++KEKK+L SYA+SLGDKLK Q VG
Sbjct: 119 IEDSEASEEVSEIGDKEEKTENTKKKKSRGSALKLSIKEKKELASYAHSLGDKLKCQLVG 178

Query: 143 KSGVTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQIGRTVIFY 202
           KSGVTD+VVF+  ETLE NELLK+KI +T P E++D V+ LE AT SV VGQIGRTVI Y
Sbjct: 179 KSGVTDSVVFSFLETLEKNELLKVKIRKTSPDELEDAVQHLEEATGSVAVGQIGRTVILY 238

Query: 203 RPSLTKLEAEKKKERARKLFAQKRER---SHAAFMKREQEPRQPGGTGRGRFGNR 255
           RPS TK++AE KK+   ++   +R++   +      R +   +P G GR R G+R
Sbjct: 239 RPSPTKMKAEAKKKEVERMSITRRQKYANTRPTKPFRREYSERPDGRGR-RGGSR 292

The following BLAST results are available for this feature:

BLAST of Spo22530.1 vs. NCBI nr
BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
BLAST of Spo22530.1 vs. ExPASy Swiss-Prot
BLAST of Spo22530.1 vs. TAIR (Arabidopsis)

BLAST of Spo22530.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902238263\|gb\|KNA25096.1\|	1.7e-121	99.1	hypothetical protein SOVF_0096...	[more]
gi\|731358495\|ref\|XP_010690781.1\|	2.7e-79	70.4	PREDICTED: uncharacterized pro...	[more]
gi\|697169984\|ref\|XP_009593902.1\|	1.3e-41	47.6	PREDICTED: uncharacterized pro...	[more]
gi\|698532967\|ref\|XP_009763301.1\|	5.0e-41	47.6	PREDICTED: uncharacterized pro...	[more]
gi\|460370224\|ref\|XP_004230954.1\|	2.5e-40	48.4	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S021_SPIOL	1.2e-121	99.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8BJU0_BETVU	1.9e-79	70.4	Uncharacterized protein OS=Bet...	[more]
A0A0V0HKX7_SOLCH	5.9e-41	57.3	Putative ovule protein OS=Sola...	[more]
K4B3P0_SOLLC	1.3e-40	50.0	Uncharacterized protein OS=Sol...	[more]
M0ZU34_SOLTU	2.2e-40	57.3	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo22530.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
YQEI_BACSU	7.2e-8	35.4	Probable RNA-binding protein Y...	[more]

BLAST of Spo22530.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT2G21350.1	1.4e-33	47.0	RNA-binding CRS1 / YhbY (CRM) ...	[more]
AT4G39040.1	5.3e-33	48.0	RNA-binding CRS1 / YhbY (CRM) ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	PRODOM	PD010559		coord: 123..205 score: 6.0
IPR001890	RNA-binding, CRM domain	GENE3D	3.30.110.60		coord: 116..207 score: 5.6
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 117..203 score: 1.7
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 117..203 score: 2.2
IPR001890	RNA-binding, CRM domain	PROFILE	PS51295	CRM	coord: 115..214 score: 16
IPR001890	RNA-binding, CRM domain	unknown	SSF75471	YhbY-like	coord: 117..205 score: 9.55
None	No IPR available	unknown	Coil	Coil	coord: 206..228 scor
None	No IPR available	PANTHER	PTHR31846	FAMILY NOT NAMED	coord: 84..255 score: 2.1
None	No IPR available	PANTHER	PTHR31846:SF14	RNA-BINDING CRS1 / YHBY (CRM) DOMAIN PROTEIN	coord: 84..255 score: 2.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding