Spo13579.1 (mRNA) | SpinachBase

Overview


Name	Spo13579.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA-binding protein RZ-1
Location	chr4 : 84007262 .. 84012603 (-)
Sequence length	2665

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCGGATTCAGATCCAGCAATTCATGGCCGGTCACGGATCGGGTACTATAGTCCTATAGTAGTTGAACCGGTTTTGGATTCAGATCCAGCAATTCATGTCGGGTTATGGAATTGGTTAGTCCGGTACCCACCTATTTTGCTCACCCCAAAATGTTAATATGCCCTTTGACACTTTCACAAAGCATATCCCTCGTTCAGCTTTCTGTTTTGCTGAGCGACAGTCTGGCTAATTAGGGTTTATCGCGAACTCATCTGCCGAAGGTTCTTCCCTCCCTATCCTTCGTATTTCGCAATCTATCTGTTATTGTCGGTGGATCACTATCAGATCTGTATTCTTATCATCATTTACTATCGATTTGTCATTTCTTGGCTGATTTTAATTTCATTGCTGCGAGGTCAGATCTATGTTGAAACTGCTAGCTTTTTATTGATTAATTGTTTGATTTTGTTTTTCGCTCTAGGTACCTTAGTATGTTTCATGAATTGCTCTTCTATTGTTTTCAATTGAATGGATGAATTTGTTTCGGAAACCTAATTTTCGATCTCATTTGATTAGTTGAAGTTTCTGTCTTTACTTTTGATAGATTCGTGATTCACTATTTTGATTCTATCATTGTTTGTGGGATAACAACGTAAAATGATGTTGTTCATGTGATTTGTTTTTGTGGATGGGTTGATGCTAAGTGCTTGTGAGGGGTTGATTTTCTGATTAGAGTATTAGTGTTGGACTTTGTTCTCAAAGCTGATTGATTTGCGGTATGTCTTAGTAACTGGTTGTTTAGGGAAGGGGTGGGAGTGGGACGGGAGAGGAATAAAGAATATCCATTTTTCGCAACCGTATTACACATTTGTGGGAGGGCATCGCAGGTCCTTAGAGTATTAGTTTCTGGGCTTCCTTATCGGAGCCAATTGACTTGCGGTAGGTCTTTGTAACTGATTATGTAGGAAGAATGCCTGGGGGAGGGAAGAATGCCCATTTTTTCATCACTGTGATTATAGTTTTGTTGGAGCGTATTGCAGGTCCTTAGTTAAGTCTTGGCCAATTGTTAATCTTAATGATCTGAGCCAGAAGAAATTGGTTCTGAGGGTTGGGAATATATATATATATATATATATATAAAGAGAGAGAGAGAAAGACAGAGCTGTAATTTATAGGGTTTTTTTATGTTGTCACAAAGGTTCAATTGGTTAGCAGTTATCTATCTTTAAAGAGAACATTTCTTGTTAATTTACCGATTATTGTAAATTTTATTAGATTTTTTTTAATGTTTCCACTAGAGCCTCAAATTGGTTTGTGGTCATCTTTATCTATCATTAAAGAAATCATTTTGTGTTTCAACATTTTAGTACTGTACTAGTATTCTACTGGTCTGATTACCAATGGGCCATGTACAATTATTACAGTGCGTTCGTCTTCCTGTTAGGTGGTTGTTTATAAGCACAATTTGGTGTACTTCCCTGGTCTTGTGCATGATTTTGACTTTTAGATACAGTATATTTTTTTTTGTTTTTGTTGTTTTCATGTACCTAATTCTGCTGTTATTTTGAGTTTCTTCATCTGTTTAATTGGATGTGGAAATATTGTTTGCCTATTTTGTAGGTAAAATCATGGGAGACGTGGATGAATTTCGCTGTTTCGTGGGTAGCCTTTCATGGTCTACTACTGATAGAGGTCTGAGAGATGCATTTGAAAAGTATGGTCGTCTACTTGAAGCCAAAGTAAGTTTTGTTTGTACCCTAGTTATGCTACAGTTGAAAAGTTACTTTTTCATAGATCTTTGATTGTTGATGGAAGTCATGTTAGTATGGGTTCCTTGTGGTAGGGAGCAAATAAAATTCTGTCAGGCACTCGGGCTTATCCTCACATGTAATTTGGGTATGCATCATGTCTATACCATTAAATTCACGGGCAGTGTAATTTTTTCTTCAGAACTCCCGGCACTTGTTTTAGTGGATTTCATCTCTATCTGAGTGGGTGAAAAAGGATTAGGAATTAATTTCCTTTTCTTGTGTATGGACTCATTGTTCGGTAGACTTATTGCCTACTTAAGAAAATTTGAGAATCGTATCTTCATAATCTTTAATTTTCCAAGTGGAATTGTTCATTTAGTTACGATAGTACTTTGATTGAAATTTAGCGTCTATTATTTGAATGTGAACGGTTATTTCAAGAACTATGTTTATTCTTTTTTTTTTCCTGACTATTGAGTTCTACCGTTCCTGACTATTGAGTTATACCGTGAACACAGGTTGTGTTGGACAAATTTTCTGGGCGTTCTCGTGGATTTGGTTTTGTTTCTTTTGATGACAAGAGAGCTATGGAAGAAGCTATTGAGGAAATGAATGGTGTTGACCTAGATGGCCGTCCTATCACTGTGGAAAGGGCTCAACCTACCCAAGGCTCTTCTAGGGACCGAGATGACGACCGTGACCGTGACCGTGGTCGTGATCGCGGCGACCGTGACCGCGGTCGTGATCGTGGTTTTGGAGGTTCAAGGGGATCTGGTGGGGGTGGTGACTGTTTTAAATGTGGTAAGCCCGGACATTTTGCTCGTGAATGTCCATCTGATGATGGAGGTAGGGGTGGTGGTAGGTATGGAGGAAGAGGTGAAAGAAAAGGTGGTAGCTATGGACCTGACCGCGGCGGTGATCGCGGCGGTGACCGTGGTGGGGATCGCTATAGTGGCGGAGGGGGAGGTGGAGGTGGACGTTACAGAGATTCTGGTAGCCGTGGAGGAGGATATGGAAGTGATAGGTACAGCCGCGACCGTTCTGGCCCATATGACCGCGCAGGATCTGGGGGCTACCGCTAAGGGTTTGAATGGTATGTAACATTCTTTCTGCTTGTGGTTTGTCATTTACTTTTAACCTACACTAACCACATTACCATTTCAATTTCAGCTGTGAAGATGATGTTTGTTCTACAGGATAATCTTCACGAAGAGAGGGAGCTTTTTTTTACTGTGTTGTACTTAGTGGAAGACATCTTATGTGGTTTCAGACTTGGAATGCGTAATTAGAGTTGAACTACTTTCTGTTTCTACACCAGGAAATCCATTTGTCCCGCTGTGGGAGTATTTTCTGTTTCAGGAGCTCACTGATGTTATGATGCGATCTTATGCTTGCTTAATGGGGACATCTGATTTGGCTCTTTAGATATATGAATCTTGTTTTCGCTGCCATACCTGGTTGATTTACATGCACGTGCATTGCTCTTTCTTCGCTGCCATTTGGTTTTGGTGTGGGTTAGTTGGACGTATAACTGGTTGTGCGCACCATGTTCCTGAGTATATATCATTCGGTTGTTATGAGCTGTGTACGTGTCTGTGGAAGTTCCAAGATGTTTTGTTCTTGTGGCATTGTCCTTTGATCTTTCCTAGTGCCTAATGCGCATTTTAAAACGAATTTTGGAAATGAGAACTGGGTAATTTCTTATCCTAATTTGATGTTTGTTTTACTTGGATGTTTTATGATATTAATTGTTTTGTGGTTTTGGCAGGCTTTATTGGCCTTTTGTGCTCCTTTTTTGGTACATGGTTCGGTTCCGTTGTTGCTAATGTTGTTCCACTGTGTCTTGGTAATAAGTTATGAAAAATGTGAGGTCTTTGGGGTTTTATCAGCAAGATGAATATGAGTGGTGCAGTGAGAAGTGCAGGGTGTTCCTTTTGTAATCTGCTGTTGTCTTGCAATGTTACGGTCAATGGAAATTTTGGTCGTTTCTTGTTCCGTGGTCTTAAAGGCTGTTCAATTCACAGACAATTGTGGCTCTATTAAGGTCATGTGTATACAACTTGCCCGTACATGTTTGTTTGTCAACAAAGTCCTGACCAGTGGGGTAGTTCTTGCAGTTTGGTCCTTGTCCCTGTTTTGAGTTCCTATTAGGCTCGAGAGACTTGATACAGAGAATCACAAATGGCCCTGGGAATCAATCTGCATGATCATTTGGGGAGTGAGCTACTTCTGTTCCTGTTAATTGGGAATGCAACTATTGATTTCAGTCGCAGAAGCAAAGAAAGGTGTTTAGTGTCTACGGACGAATTAGATGATGCTTCTCACTTACTCAGTTATAGAGTGTAGGCACATGCTATATAGAGTGAATGGTATGCCTATATTTGATGTTGCATTTTCTGAGAATTTTAAGTGTTTTTTGGACTGCCCCCTTCGCATGATATTAAAAGAAAAAGTTCTGATGATGTTTGCTAACTGCATATCCATGTGTGTTTATTATCTGTGCTGGCCCTCATATCTTCAAGTATTTTATTCCAATTTGATTGGTGCATGAAGAACACAGATTACCATTTTTATGTTCTCCAGATCATAATGTTTGTTCAAGCTTACTCTTTAGGTAGTTGTAAATGTATGGTTTTGCGTTCATTCTCATGCTGAATTCAAGATTTTCTATTATTTGCCACAGTGCATTTTATTGATGTTAACGACATCGACTCTGAATGTGATGCAAAATTGCTTGAACTGATGTAATTGTAATTGTGTGTACCAAATAATATACGAAGTATGTAAACCTGGAATCAATGTAGATGCATTGCTTGTCGTGAGTAAGATTTGCAAGAGTATGTTAGTCTTTTGTTTTCTGAGGTAGTGCGATAGTTCCATGCATTTATGTTGTACTCCCATAAAACATTGTTCTACAAATGTTTACTTCCATCTTTTTCTGGGCAGCCTTTGAATTTTTTTTTTTTGTTTCCTCGCATACCATCCGAGTAAAAGATTCTTTCTGATTGATTTTTTAAGGTGATTTGAGAAGTTTTGATTTCCTGGGGCTGGTGGGATTGATGATGTGTTATTCTTGAATGTCATTTGTTGGGGGCATTAGTTCCCATTCTGAAAGCATGGTGGGTGTATTTCTTTCCTCTAGAGAGGGTATTATAGGAATTAAAGTAGTTGCATTGCGCATCTATTAGATTATTTGGCAGGATACTGAATTGTGTGGAGATCACTAACGAGGTTCACTAGATGAAGAGGAAATGTTACAATGGAGCTGATATTTTTTGGTCTTCTGCTTCTGTTCTCTATCATGGCAATCACAAAGACTTGGCGGGTCCGTAGCGGGTTGGTTAAGTGAGTTTTGGCCAGGCCTTGTTATCTTTGATCACTGAGATTCGCTGAGACGTGAGAGTACTCATGAGAAACAAACTCATTATTATCCCTTATCACAGTATGTTGTACAGATAATTAGTTTATTGAATCAATACTAGGGAGCCTATAACATCAATCTTTTCTGTTTATTTCTGGCAAAAAATGGTTCCTGTTTATTTGTAGGGAAAAAATGGTTATAAGCTTGTTGAATTTTCCATACCTATAAGAAAGCTTATTGATTTT

mRNA sequence

ATGGGTTCGGATTCAGATCCAGCAATTCATGGCCGGTCACGGATCGGGTACTATAGTCCTATAGTAGTTGAACCGGTTTTGGATTCAGATCCAGCAATTCATGTCGGGTTATGGAATTGGTTAGTCCGGTACCCACCTATTTTGCTCACCCCAAAATGGTTTATCGCGAACTCATCTGCCGAAGGTAAAATCATGGGAGACGTGGATGAATTTCGCTGTTTCGTGGGTAGCCTTTCATGGTCTACTACTGATAGAGGTCTGAGAGATGCATTTGAAAAGTATGGTCGTCTACTTGAAGCCAAAGTTGTGTTGGACAAATTTTCTGGGCGTTCTCGTGGATTTGGTTTTGTTTCTTTTGATGACAAGAGAGCTATGGAAGAAGCTATTGAGGAAATGAATGGTGTTGACCTAGATGGCCGTCCTATCACTGTGGAAAGGGCTCAACCTACCCAAGGCTCTTCTAGGGACCGAGATGACGACCGTGACCGTGACCGTGGTCGTGATCGCGGCGACCGTGACCGCGGTCGTGATCGTGGTTTTGGAGGTTCAAGGGGATCTGGTGGGGGTGGTGACTGTTTTAAATGTGGTAAGCCCGGACATTTTGCTCGTGAATGTCCATCTGATGATGGAGGTAGGGGTGGTGGTAGGTATGGAGGAAGAGGTGAAAGAAAAGGTGGTAGCTATGGACCTGACCGCGGCGGTGATCGCGGCGGTGACCGTGGTGGGGATCGCTATAGTGGCGGAGGGGGAGGTGGAGGTGGACGTTACAGAGATTCTGGTAGCCGTGGAGGAGGATATGGAAGTGATAGGTACAGCCGCGACCGTTCTGGCCCATATGACCGCGCAGGATCTGGGGGCTACCGCTAAGGGTTTGAATGCTGTGAAGATGATGTTTGTTCTACAGGATAATCTTCACGAAGAGAGGGAGCTTTTTTTTACTGTGTTGTACTTAGTGGAAGACATCTTATGTGGTTTCAGACTTGGAATGCGTAATTAGAGTTGAACTACTTTCTGTTTCTACACCAGGAAATCCATTTGTCCCGCTGTGGGAGTATTTTCTGTTTCAGGAGCTCACTGATGTTATGATGCGATCTTATGCTTGCTTAATGGGGACATCTGATTTGGCTCTTTAGATATATGAATCTTGTTTTCGCTGCCATACCTGGTTGATTTACATGCACGTGCATTGCTCTTTCTTCGCTGCCATTTGGTTTTGGTGTGGGTTAGTTGGACGTATAACTGGTTGTGCGCACCATGTTCCTGAGTATATATCATTCGGTTGTTATGAGCTGTGTACGTGTCTGTGGAAGTTCCAAGATGTTTTGTTCTTGTGGCATTGTCCTTTGATCTTTCCTAGTGCCTAATGCGCATTTTAAAACGAATTTTGGAAATGAGAACTGGGTAATTTCTTATCCTAATTTGATGTTTGTTTTACTTGGATGTTTTATGATATTAATTGTTTTGTGGTTTTGGCAGGCTTTATTGGCCTTTTGTGCTCCTTTTTTGGTACATGGTTCGGTTCCGTTGTTGCTAATGTTGTTCCACTGTGTCTTGGTAATAAGTTATGAAAAATGTGAGGTCTTTGGGGTTTTATCAGCAAGATGAATATGAGTGGTGCAGTGAGAAGTGCAGGGTGTTCCTTTTGTAATCTGCTGTTGTCTTGCAATGTTACGGTCAATGGAAATTTTGGTCGTTTCTTGTTCCGTGGTCTTAAAGGCTGTTCAATTCACAGACAATTGTGGCTCTATTAAGGTCATGTGTATACAACTTGCCCGTACATGTTTGTTTGTCAACAAAGTCCTGACCAGTGGGGTAGTTCTTGCAGTTTGGTCCTTGTCCCTGTTTTGAGTTCCTATTAGGCTCGAGAGACTTGATACAGAGAATCACAAATGGCCCTGGGAATCAATCTGCATGATCATTTGGGGAGTGAGCTACTTCTGTTCCTGTTAATTGGGAATGCAACTATTGATTTCAGTCGCAGAAGCAAAGAAAGGTGTTTAGTGTCTACGGACGAATTAGATGATGCTTCTCACTTACTCAGTTATAGAGTGTAGGCACATGCTATATAGAGTGAATGGTGATTTGAGAAGTTTTGATTTCCTGGGGCTGGTGGGATTGATGATGTGTTATTCTTGAATGTCATTTGTTGGGGGCATTAGTTCCCATTCTGAAAGCATGGTGGGTGTATTTCTTTCCTCTAGAGAGGGTATTATAGGAATTAAAGTAGTTGCATTGCGCATCTATTAGATTATTTGGCAGGATACTGAATTGTGTGGAGATCACTAACGAGGTTCACTAGATGAAGAGGAAATGTTACAATGGAGCTGATATTTTTTGGTCTTCTGCTTCTGTTCTCTATCATGGCAATCACAAAGACTTGGCGGGTCCGTAGCGGGTTGGTTAAGTGAGTTTTGGCCAGGCCTTGTTATCTTTGATCACTGAGATTCGCTGAGACGTGAGAGTACTCATGAGAAACAAACTCATTATTATCCCTTATCACAGTATGTTGTACAGATAATTAGTTTATTGAATCAATACTAGGGAGCCTATAACATCAATCTTTTCTGTTTATTTCTGGCAAAAAATGGTTCCTGTTTATTTGTAGGGAAAAAATGGTTATAAGCTTGTTGAATTTTCCATACCTATAAGAAAGCTTATTGATTTT

Coding sequence (CDS)

ATGGGTTCGGATTCAGATCCAGCAATTCATGGCCGGTCACGGATCGGGTACTATAGTCCTATAGTAGTTGAACCGGTTTTGGATTCAGATCCAGCAATTCATGTCGGGTTATGGAATTGGTTAGTCCGGTACCCACCTATTTTGCTCACCCCAAAATGGTTTATCGCGAACTCATCTGCCGAAGGTAAAATCATGGGAGACGTGGATGAATTTCGCTGTTTCGTGGGTAGCCTTTCATGGTCTACTACTGATAGAGGTCTGAGAGATGCATTTGAAAAGTATGGTCGTCTACTTGAAGCCAAAGTTGTGTTGGACAAATTTTCTGGGCGTTCTCGTGGATTTGGTTTTGTTTCTTTTGATGACAAGAGAGCTATGGAAGAAGCTATTGAGGAAATGAATGGTGTTGACCTAGATGGCCGTCCTATCACTGTGGAAAGGGCTCAACCTACCCAAGGCTCTTCTAGGGACCGAGATGACGACCGTGACCGTGACCGTGGTCGTGATCGCGGCGACCGTGACCGCGGTCGTGATCGTGGTTTTGGAGGTTCAAGGGGATCTGGTGGGGGTGGTGACTGTTTTAAATGTGGTAAGCCCGGACATTTTGCTCGTGAATGTCCATCTGATGATGGAGGTAGGGGTGGTGGTAGGTATGGAGGAAGAGGTGAAAGAAAAGGTGGTAGCTATGGACCTGACCGCGGCGGTGATCGCGGCGGTGACCGTGGTGGGGATCGCTATAGTGGCGGAGGGGGAGGTGGAGGTGGACGTTACAGAGATTCTGGTAGCCGTGGAGGAGGATATGGAAGTGATAGGTACAGCCGCGACCGTTCTGGCCCATATGACCGCGCAGGATCTGGGGGCTACCGCTAA

Protein sequence

MGSDSDPAIHGRSRIGYYSPIVVEPVLDSDPAIHVGLWNWLVRYPPILLTPKWFIANSSAEGKIMGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRAMEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSRGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDRYSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo13579	Spo13579	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo13579.1	Spo13579.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13579.1.CDS.4	Spo13579.1.CDS.4	CDS
Spo13579.1.CDS.3	Spo13579.1.CDS.3	CDS
Spo13579.1.CDS.2	Spo13579.1.CDS.2	CDS
Spo13579.1.CDS.1	Spo13579.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13579.1.utr3p.3	Spo13579.1.utr3p.3	three_prime_UTR
Spo13579.1.utr3p.2	Spo13579.1.utr3p.2	three_prime_UTR
Spo13579.1.utr3p.1	Spo13579.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13579.1.exon.6	Spo13579.1.exon.6	exon
Spo13579.1.exon.5	Spo13579.1.exon.5	exon
Spo13579.1.exon.4	Spo13579.1.exon.4	exon
Spo13579.1.exon.3	Spo13579.1.exon.3	exon
Spo13579.1.exon.2	Spo13579.1.exon.2	exon
Spo13579.1.exon.1	Spo13579.1.exon.1	exon

Homology

[Close]

BLAST of Spo13579.1 vs. NCBI nr
Match: gi|902172914|gb|KNA08186.1| (hypothetical protein SOVF_164880 [Spinacia oleracea])

HSP 1 Score: 378.6 bits (971), Expect = 9.500e-102
Identity = 205/224 (91.52%), Postives = 205/224 (91.52%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA
Sbjct: 1   MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSR 184
           MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDR                   SR
Sbjct: 61  MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDR-------------------SR 120

Query: 185 GSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDR 244
           GSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDR
Sbjct: 121 GSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDR 180

Query: 245 YSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR 289
           YSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR
Sbjct: 181 YSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR 205

[Close]

BLAST of Spo13579.1 vs. NCBI nr
Match: gi|731313438|ref|XP_010680268.1| (PREDICTED: glycine-rich RNA-binding protein RZ1A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 367.9 bits (943), Expect = 1.700e-98
Identity = 207/229 (90.39%), Postives = 213/229 (93.01%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           MGDVDEFRCFVGSLSWSTTDRGL+DAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA
Sbjct: 1   MGDVDEFRCFVGSLSWSTTDRGLKDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRG---DRDRGRDRGF- 184
           MEEAIEEMNG+DLDGRPITVERAQPTQGSSRDRD D DRDRGRDRG   DRDR R RG+ 
Sbjct: 61  MEEAIEEMNGMDLDGRPITVERAQPTQGSSRDRDGDYDRDRGRDRGRDRDRDRERPRGYG 120

Query: 185 GGSRGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGS-YGPDRGGDRGGD 244
           GGSRGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGG  YGP    DRGGD
Sbjct: 121 GGSRGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGGHYGP----DRGGD 180

Query: 245 RGGDRYSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR 289
           RGGDRYSGGGGGGGGRYRDSGSR GGYG+DRYSRDRSGPY+R G+GGYR
Sbjct: 181 RGGDRYSGGGGGGGGRYRDSGSR-GGYGNDRYSRDRSGPYERPGAGGYR 224

[Close]

BLAST of Spo13579.1 vs. NCBI nr
Match: gi|661899499|emb|CDO97493.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 260.8 bits (665), Expect = 2.900e-66
Identity = 156/225 (69.33%), Postives = 175/225 (77.78%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           M DV E+RCF+G+LSWST+DRGL+DAFEK+G L+EAKVV+DKFSGRSRGFGFV+FD+K A
Sbjct: 1   MSDVAEYRCFIGNLSWSTSDRGLKDAFEKFGHLIEAKVVMDKFSGRSRGFGFVTFDEKDA 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSR 184
           MEEAI  MNG+DLDGRPITV++AQP QG  RD D  RDRDRGRDR  RD      +GG R
Sbjct: 61  MEEAIHAMNGMDLDGRPITVDKAQPNQGGDRDIDRPRDRDRGRDRDRRD------YGGGR 120

Query: 185 GSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDR-GGDRGGD 244
           GSGGG DCFKCGKPGHFARECP DDGGRG  RYGGR +R GGS G  RGG R G +R GD
Sbjct: 121 GSGGG-DCFKCGKPGHFARECP-DDGGRGN-RYGGRDDRYGGSGGGGRGGGRYGPERNGD 180

Query: 245 RYSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR 289
           R+       G R RD G  GGG   DRY+RDRSGPYDR GSGG+R
Sbjct: 181 RF-------GSRNRDGGGHGGG---DRYNRDRSGPYDRRGSGGFR 206

[Close]

BLAST of Spo13579.1 vs. NCBI nr
Match: gi|992161641|gb|KXG24163.1| (hypothetical protein SORBI_007G002200 [Sorghum bicolor])

HSP 1 Score: 260.4 bits (664), Expect = 3.800e-66
Identity = 161/231 (69.70%), Postives = 174/231 (75.32%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           M DVDEFRCFVGSLSWSTT+  L+DAF K+G L EAKVVLDKFSGRSRGFGFV+FDDK++
Sbjct: 1   MSDVDEFRCFVGSLSWSTTEADLKDAFRKFGHLTEAKVVLDKFSGRSRGFGFVTFDDKKS 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRG-----RDRGDRDRGRDRG 184
           MEEAIE MNG+DLDGR ITVERAQ     SRDRD DRD  RG     R RGD  RGRD G
Sbjct: 61  MEEAIEAMNGMDLDGRNITVERAQAQSSGSRDRDGDRDYSRGGGDRDRYRGDYSRGRDHG 120

Query: 185 --FGGSRGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRG 244
             FGG RG GGGGDCFKCGKPGHFARECPSDDGGR G RYG R ++ GGS G  R    G
Sbjct: 121 RDFGGGRG-GGGGDCFKCGKPGHFARECPSDDGGR-GDRYGSRDDKYGGSNGSSR---YG 180

Query: 245 GDRGGDRYSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR 289
            DRGGDRYSG         RD GSR GG GSDRY+RD+SGPY+R   GGY+
Sbjct: 181 PDRGGDRYSGS--------RDGGSRNGG-GSDRYNRDKSGPYERPSRGGYK 217

[Close]

BLAST of Spo13579.1 vs. NCBI nr
Match: gi|225463887|ref|XP_002264022.1| (PREDICTED: glycine-rich RNA-binding protein RZ1A [Vitis vinifera])

HSP 1 Score: 259.2 bits (661), Expect = 8.400e-66
Identity = 151/218 (69.27%), Postives = 177/218 (81.19%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           M + +E+RCF+G LSWST+DR L++AFEK+G L+EAKVV+DKFSGRSRGFGFVSFDDK+A
Sbjct: 1   MSEHEEYRCFIGGLSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQA 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDR-GDRDRGRDRGFGGS 184
           ME+AI+EM+G+DLDGR ITV++AQP QGS RDRD DRDRDRGRDR  DRDR RD  +GG 
Sbjct: 61  MEDAIKEMHGMDLDGRSITVDKAQPNQGSGRDRDGDRDRDRGRDRYNDRDRNRD--YGGG 120

Query: 185 RGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGD 244
           RGS GG +CFKCGKPGHFARECPS +G RGG RYGGR ++ GG  G   GG  G DR GD
Sbjct: 121 RGSNGG-ECFKCGKPGHFARECPSSEGARGG-RYGGRDDKYGGGGGGGSGGRYGPDRNGD 180

Query: 245 RYSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDR 282
           RY       GGR +D+GSRGG  G+DRYSRDRSGPY+R
Sbjct: 181 RY-------GGRSKDAGSRGGS-GNDRYSRDRSGPYER 206

[Close]

BLAST of Spo13579.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QNN6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_164880 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 6.600e-102
Identity = 205/224 (91.52%), Postives = 205/224 (91.52%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA
Sbjct: 1   MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSR 184
           MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDR                   SR
Sbjct: 61  MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDR-------------------SR 120

Query: 185 GSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDR 244
           GSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDR
Sbjct: 121 GSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDR 180

Query: 245 YSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR 289
           YSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR
Sbjct: 181 YSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR 205

[Close]

BLAST of Spo13579.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D597_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g011090 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.200e-98
Identity = 207/229 (90.39%), Postives = 213/229 (93.01%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           MGDVDEFRCFVGSLSWSTTDRGL+DAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA
Sbjct: 1   MGDVDEFRCFVGSLSWSTTDRGLKDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRG---DRDRGRDRGF- 184
           MEEAIEEMNG+DLDGRPITVERAQPTQGSSRDRD D DRDRGRDRG   DRDR R RG+ 
Sbjct: 61  MEEAIEEMNGMDLDGRPITVERAQPTQGSSRDRDGDYDRDRGRDRGRDRDRDRERPRGYG 120

Query: 185 GGSRGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGS-YGPDRGGDRGGD 244
           GGSRGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGG  YGP    DRGGD
Sbjct: 121 GGSRGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGGHYGP----DRGGD 180

Query: 245 RGGDRYSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR 289
           RGGDRYSGGGGGGGGRYRDSGSR GGYG+DRYSRDRSGPY+R G+GGYR
Sbjct: 181 RGGDRYSGGGGGGGGRYRDSGSR-GGYGNDRYSRDRSGPYERPGAGGYR 224

[Close]

BLAST of Spo13579.1 vs. UniProtKB/TrEMBL
Match: F6HW88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0166g00180 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 6.900e-67
Identity = 154/231 (66.67%), Postives = 182/231 (78.79%), Query Frame = 1


		  
Query: 52  KWFIANSSAEGKIMGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRS 111
           KW+     +  K M + +E+RCF+G LSWST+DR L++AFEK+G L+EAKVV+DKFSGRS
Sbjct: 67  KWYYKTGMSV-KQMSEHEEYRCFIGGLSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRS 126

Query: 112 RGFGFVSFDDKRAMEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDR-G 171
           RGFGFVSFDDK+AME+AI+EM+G+DLDGR ITV++AQP QGS RDRD DRDRDRGRDR  
Sbjct: 127 RGFGFVSFDDKQAMEDAIKEMHGMDLDGRSITVDKAQPNQGSGRDRDGDRDRDRGRDRYN 186

Query: 172 DRDRGRDRGFGGSRGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGP 231
           DRDR RD  +GG RGS GG +CFKCGKPGHFARECPS +G RGG RYGGR ++ GG  G 
Sbjct: 187 DRDRNRD--YGGGRGSNGG-ECFKCGKPGHFARECPSSEGARGG-RYGGRDDKYGGGGGG 246

Query: 232 DRGGDRGGDRGGDRYSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDR 282
             GG  G DR GDRY       GGR +D+GSRGG  G+DRYSRDRSGPY+R
Sbjct: 247 GSGGRYGPDRNGDRY-------GGRSKDAGSRGGS-GNDRYSRDRSGPYER 284

[Close]

BLAST of Spo13579.1 vs. UniProtKB/TrEMBL
Match: A0A068TQ53_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014849001 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.000e-66
Identity = 156/225 (69.33%), Postives = 175/225 (77.78%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           M DV E+RCF+G+LSWST+DRGL+DAFEK+G L+EAKVV+DKFSGRSRGFGFV+FD+K A
Sbjct: 1   MSDVAEYRCFIGNLSWSTSDRGLKDAFEKFGHLIEAKVVMDKFSGRSRGFGFVTFDEKDA 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSR 184
           MEEAI  MNG+DLDGRPITV++AQP QG  RD D  RDRDRGRDR  RD      +GG R
Sbjct: 61  MEEAIHAMNGMDLDGRPITVDKAQPNQGGDRDIDRPRDRDRGRDRDRRD------YGGGR 120

Query: 185 GSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDR-GGDRGGD 244
           GSGGG DCFKCGKPGHFARECP DDGGRG  RYGGR +R GGS G  RGG R G +R GD
Sbjct: 121 GSGGG-DCFKCGKPGHFARECP-DDGGRGN-RYGGRDDRYGGSGGGGRGGGRYGPERNGD 180

Query: 245 RYSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR 289
           R+       G R RD G  GGG   DRY+RDRSGPYDR GSGG+R
Sbjct: 181 RF-------GSRNRDGGGHGGG---DRYNRDRSGPYDRRGSGGFR 206

[Close]

BLAST of Spo13579.1 vs. UniProtKB/TrEMBL
Match: A0A0A9T1B4_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.600e-66
Identity = 165/233 (70.82%), Postives = 176/233 (75.54%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           M D DE+RCFVGSLSWSTT+  L+DAF K+GRL EAKVVLDKFSGRSRGFGFV+FDDK+A
Sbjct: 1   MSDADEYRCFVGSLSWSTTEVDLKDAFGKFGRLTEAKVVLDKFSGRSRGFGFVTFDDKKA 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRG---RDRG------DRDRG 184
           MEEAIE MNG+DLDGR ITVERAQP QGS RDR  DRD  RG   RDR       DRDRG
Sbjct: 61  MEEAIEAMNGMDLDGRNITVERAQP-QGSGRDRGGDRDYSRGGSDRDRSHGDYGRDRDRG 120

Query: 185 RDRGFGGSRGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGD 244
           RD  FGG R  GGGGDCFKCGKPGHFARECPSDDGGR G RYG R +R GGS G  R   
Sbjct: 121 RD--FGGGR--GGGGDCFKCGKPGHFARECPSDDGGR-GDRYGSRDDRYGGSNGSSR--- 180

Query: 245 RGGDRGGDRYSGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGGYR 289
            G DRGGDRYS        R RD GSR GG GSDRY+RD+SGPY+R   GGYR
Sbjct: 181 YGPDRGGDRYS--------RSRDGGSRNGG-GSDRYNRDKSGPYERPSRGGYR 215

[Close]

BLAST of Spo13579.1 vs. ExPASy Swiss-Prot
Match: RZ1A_ARATH (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.300e-46
Identity = 139/257 (54.09%), Postives = 164/257 (63.81%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           M +  E+RCF+G L+W+T+DRGLRDAFEKYG L+EAKVVLDKFSGRSRGFGF++FD+K+A
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSS-RDRDDDRDRDRGRDRGDRDRGRDRGFGGS 184
           M+EAI  MNG+DLDGR ITV++AQP QG + RD D DR RDRG DR DR R         
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDR-DRSR--------P 120

Query: 185 RGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGER---KGGSYG--PDRGG---D 244
            G  GGGDCFKCGKPGHFARECPS+    GGGR+  + +R   K   YG   DR G   D
Sbjct: 121 SGGRGGGDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKED 180

Query: 245 RGGDRG------GDRYS------GGGGGGGGRY-------------RDSGSRGGGYGSDR 288
           R G +        DRYS      G   GGG RY             RD GSRG   G +R
Sbjct: 181 RYGAKDDRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAP-GGER 240

[Close]

BLAST of Spo13579.1 vs. ExPASy Swiss-Prot
Match: RBG8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.600e-24
Identity = 86/183 (46.99%), Postives = 108/183 (59.02%), Query Frame = 1


		  
Query: 70  EFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRAMEEAI 129
           E+RCFVG L+W+T D  L+  F ++G ++++K++ D+ SGRSRGFGFV+F D++AM +AI
Sbjct: 5   EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64

Query: 130 EEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSRGSGGG 189
           EEMNG +LDGR ITV  AQ ++GS            G  RG    G   G GG    GGG
Sbjct: 65  EEMNGKELDGRVITVNEAQ-SRGSGGG---------GGGRGGSGGGYRSGGGGGYSGGGG 124

Query: 190 GDCFKCGKPGHFARECPSDDGGRGGGR-YGGRGERKGGSYGPDRGGDRGGDRGGDRYSGG 249
           G     G  G+  R      GG GGGR YGG G R+GG YG       GGD  G  Y GG
Sbjct: 125 GGYSGGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYG-------GGD--GGSYGGG 168

Query: 250 GGG 252
           GGG
Sbjct: 185 GGG 168

[Close]

BLAST of Spo13579.1 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.400e-23
Identity = 83/186 (44.62%), Postives = 107/186 (57.53%), Query Frame = 1


		  
Query: 70  EFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRAMEEAI 129
           E+RCFVG L+W+T +R L  AF ++G L+++K++ D+ +GRSRGFGFV+F D+++M++AI
Sbjct: 7   EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66

Query: 130 EEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSRGSGGG 189
           E MNG DLDGR ITV  AQ                RG   G   RG   G+ G  G GGG
Sbjct: 67  EGMNGQDLDGRSITVNEAQ---------------SRGSGAGGGGRGGGGGYRGGGGYGGG 126

Query: 190 GDCFKCGKP---GHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDRYS 249
           G  +  G+    G+          G GGG YGG G R GG YG       GG+ GG  Y 
Sbjct: 127 GGGYGGGRREGGGYSGGGGGYSSRGGGGGGYGGGGRRDGGGYG-------GGEGGG--YG 168

Query: 250 GGGGGG 253
           GGGGGG
Sbjct: 187 GGGGGG 168

[Close]

BLAST of Spo13579.1 vs. ExPASy Swiss-Prot
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.100e-23
Identity = 95/221 (42.99%), Postives = 120/221 (54.30%), Query Frame = 1


		  
Query: 66  GDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRAM 125
           GDV E+RCFVG L+W+T DR L  AF +YG ++++K++ D+ +GRSRGFGFV+F D++AM
Sbjct: 4   GDV-EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 63

Query: 126 EEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSRG 185
           ++AIE MNG DLDGR ITV  AQ ++GS                         G GG RG
Sbjct: 64  KDAIEGMNGQDLDGRSITVNEAQ-SRGSG------------------------GGGGHRG 123

Query: 186 SGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDRY 245
            GGGG  ++ G  G ++          GGG YGG G R+ G  G   GG     RGG   
Sbjct: 124 GGGGG--YRSGGGGGYS---------GGGGSYGGGGGRREGGGGYSGGGGGYSSRGG--- 174

Query: 246 SGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGG 287
            GGG  GGGR    G  GGG G         G Y  +G GG
Sbjct: 184 -GGGSYGGGRREGGGGYGGGEG---------GGYGGSGGGG 174

[Close]

BLAST of Spo13579.1 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.300e-22
Identity = 89/198 (44.95%), Postives = 110/198 (55.56%), Query Frame = 1


		  
Query: 70  EFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRAMEEAI 129
           E+RCFVG L+W+T DR L  AF +YG +L++K++ D+ +GRSRGFGFV+F D+++M++AI
Sbjct: 7   EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66

Query: 130 EEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSRGSGGG 189
           E MNG DLDGR ITV  AQ                             RG GG  G  GG
Sbjct: 67  EGMNGQDLDGRSITVNEAQ----------------------------SRGSGGGGGGRGG 126

Query: 190 GDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDRYSGGG 249
           G  ++ G  G +         G GGG YGG G R+GG  G   GG     RGG    GGG
Sbjct: 127 GGGYRSGGGGGY---------GGGGGGYGG-GGREGGYSG---GGGGYSSRGG----GGG 158

Query: 250 GGGGGRYRDSGSRGGGYG 268
           G GGG  RD G  GGGYG
Sbjct: 187 GYGGGGRRD-GGEGGGYG 158

[Close]

BLAST of Spo13579.1 vs. TAIR (Arabidopsis)
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 186.8 bits (473), Expect = 1.900e-47
Identity = 139/257 (54.09%), Postives = 164/257 (63.81%), Query Frame = 1


		  
Query: 65  MGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRA 124
           M +  E+RCF+G L+W+T+DRGLRDAFEKYG L+EAKVVLDKFSGRSRGFGF++FD+K+A
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 125 MEEAIEEMNGVDLDGRPITVERAQPTQGSS-RDRDDDRDRDRGRDRGDRDRGRDRGFGGS 184
           M+EAI  MNG+DLDGR ITV++AQP QG + RD D DR RDRG DR DR R         
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDR-DRSR--------P 120

Query: 185 RGSGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGER---KGGSYG--PDRGG---D 244
            G  GGGDCFKCGKPGHFARECPS+    GGGR+  + +R   K   YG   DR G   D
Sbjct: 121 SGGRGGGDCFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAKED 180

Query: 245 RGGDRG------GDRYS------GGGGGGGGRY-------------RDSGSRGGGYGSDR 288
           R G +        DRYS      G   GGG RY             RD GSRG   G +R
Sbjct: 181 RYGAKDDRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAP-GGER 240

[Close]

BLAST of Spo13579.1 vs. TAIR (Arabidopsis)
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 114.8 bits (286), Expect = 9.000e-26
Identity = 86/183 (46.99%), Postives = 108/183 (59.02%), Query Frame = 1


		  
Query: 70  EFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRAMEEAI 129
           E+RCFVG L+W+T D  L+  F ++G ++++K++ D+ SGRSRGFGFV+F D++AM +AI
Sbjct: 5   EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64

Query: 130 EEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSRGSGGG 189
           EEMNG +LDGR ITV  AQ ++GS            G  RG    G   G GG    GGG
Sbjct: 65  EEMNGKELDGRVITVNEAQ-SRGSGGG---------GGGRGGSGGGYRSGGGGGYSGGGG 124

Query: 190 GDCFKCGKPGHFARECPSDDGGRGGGR-YGGRGERKGGSYGPDRGGDRGGDRGGDRYSGG 249
           G     G  G+  R      GG GGGR YGG G R+GG YG       GGD  G  Y GG
Sbjct: 125 GGYSGGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYG-------GGD--GGSYGGG 168

Query: 250 GGG 252
           GGG
Sbjct: 185 GGG 168

[Close]

BLAST of Spo13579.1 vs. TAIR (Arabidopsis)
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2)

HSP 1 Score: 109.8 bits (273), Expect = 2.900e-24
Identity = 95/221 (42.99%), Postives = 120/221 (54.30%), Query Frame = 1


		  
Query: 66  GDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRAM 125
           GDV E+RCFVG L+W+T DR L  AF +YG ++++K++ D+ +GRSRGFGFV+F D++AM
Sbjct: 4   GDV-EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 63

Query: 126 EEAIEEMNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSRG 185
           ++AIE MNG DLDGR ITV  AQ ++GS                         G GG RG
Sbjct: 64  KDAIEGMNGQDLDGRSITVNEAQ-SRGSG------------------------GGGGHRG 123

Query: 186 SGGGGDCFKCGKPGHFARECPSDDGGRGGGRYGGRGERKGGSYGPDRGGDRGGDRGGDRY 245
            GGGG  ++ G  G ++          GGG YGG G R+ G  G   GG     RGG   
Sbjct: 124 GGGGG--YRSGGGGGYS---------GGGGSYGGGGGRREGGGGYSGGGGGYSSRGG--- 174

Query: 246 SGGGGGGGGRYRDSGSRGGGYGSDRYSRDRSGPYDRAGSGG 287
            GGG  GGGR    G  GGG G         G Y  +G GG
Sbjct: 184 -GGGSYGGGRREGGGGYGGGEG---------GGYGGSGGGG 174

[Close]

BLAST of Spo13579.1 vs. TAIR (Arabidopsis)
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 103.2 bits (256), Expect = 2.700e-22
Identity = 101/228 (44.30%), Postives = 127/228 (55.70%), Query Frame = 1


		  
Query: 72  RCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVSFDDKRAMEEAIEE 131
           R FVG LS   TDR L  AF ++G +L+ +++L++ +GRSRGFGF++F D+RAM+E+I E
Sbjct: 8   RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67

Query: 132 MNGVDLDGRPITVERAQPTQGSSRDRDDDRDRDRGRDRGDRDRGRDRGFGGSRGSGGGG- 191
           M+G D   R I+V RA+P  G    RDD         RG RD G      GS G GGGG 
Sbjct: 68  MHGRDFGDRVISVNRAEPKLG----RDDGESHG---SRGGRDSGYSIAGKGSFGGGGGGG 127

Query: 192 ------DCFKCGKPGHFARECPSDDGGRGG--GRYGGRGERKGGSYG-PDRGGDRGGDRG 251
                 +CFKCG+ GH+AR+CPS  GGRGG  G +  R    GGS G  DR  DR     
Sbjct: 128 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 187

Query: 252 GDRYSGGGGGGGGRY--RDS-GSRGGGYGSDRYSRDR-SGPYDRAGSG 286
            +RY      G  RY  RD   SR      DRY+ DR + P DR   G
Sbjct: 188 RERYIDDRYDGAARYGARDRFDSREAYIPRDRYASDRYAAPADRFAGG 228

[Close]

BLAST of Spo13579.1 vs. TAIR (Arabidopsis)
Match: AT3G53460.4 (chloroplast RNA-binding protein 29)

HSP 1 Score: 84.0 bits (206), Expect = 1.700e-16
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1


		  
Query: 59  SAEGKIMGDVDEFRCFVGSLSWSTTDRGLRDAFEKYGRLLEAKVVLDKFSGRSRGFGFVS 118
           S  G   G     R +VG+LSW   D  L + F + G+++EA+V+ D+ SGRS+GFGFV+
Sbjct: 266 SGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVT 325

Query: 119 FDDKRAMEEAIEEMNGVDLDGRPITVERAQ 149
               + +++AI  +NG DLDGR I V  A+
Sbjct: 326 LSSSQEVQKAINSLNGADLDGRQIRVSEAE 355

The following BLAST results are available for this feature:

BLAST of Spo13579.1 vs. NCBI nr
BLAST of Spo13579.1 vs. UniProtKB/TrEMBL
BLAST of Spo13579.1 vs. ExPASy Swiss-Prot
BLAST of Spo13579.1 vs. TAIR (Arabidopsis)

BLAST of Spo13579.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902172914\|gb\|KNA08186.1\|	9.5e-102	91.5	hypothetical protein SOVF_1648...	[more]
gi\|731313438\|ref\|XP_010680268.1\|	1.7e-98	90.3	PREDICTED: glycine-rich RNA-bi...	[more]
gi\|661899499\|emb\|CDO97493.1\|	2.9e-66	69.3	unnamed protein product [Coffe...	[more]
gi\|992161641\|gb\|KXG24163.1\|	3.8e-66	69.7	hypothetical protein SORBI_007...	[more]
gi\|225463887\|ref\|XP_002264022.1\|	8.4e-66	69.2	PREDICTED: glycine-rich RNA-bi...	[more]

BLAST of Spo13579.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QNN6_SPIOL	6.6e-102	91.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8D597_BETVU	1.2e-98	90.3	Uncharacterized protein OS=Bet...	[more]
F6HW88_VITVI	6.9e-67	66.6	Putative uncharacterized prote...	[more]
A0A068TQ53_COFCA	2.0e-66	69.3	Uncharacterized protein OS=Cof...	[more]
A0A0A9T1B4_ARUDO	2.6e-66	70.8	Uncharacterized protein OS=Aru...	[more]

BLAST of Spo13579.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RZ1A_ARATH	3.3e-46	54.0	Glycine-rich RNA-binding prote...	[more]
RBG8_ARATH	1.6e-24	46.9	Glycine-rich RNA-binding prote...	[more]
GRP2_SINAL	1.4e-23	44.6	Glycine-rich RNA-binding prote...	[more]
RBG7_ARATH	5.1e-23	42.9	Glycine-rich RNA-binding prote...	[more]
GRP1_SINAL	3.3e-22	44.9	Glycine-rich RNA-binding prote...	[more]

BLAST of Spo13579.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G26420.1	1.9e-47	54.0	RNA-binding (RRM/RBD/RNP motif...	[more]
AT4G39260.1	9.0e-26	46.9	cold, circadian rhythm, and RN...	[more]
AT2G21660.1	2.9e-24	42.9	cold, circadian rhythm, and rn...	[more]
AT5G04280.1	2.7e-22	44.3	RNA-binding (RRM/RBD/RNP motif...	[more]
AT3G53460.4	1.7e-16	42.2	chloroplast RNA-binding protei...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 74..142 score: 2.3
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 72..145 score: 9.0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 71..149 score: 20
IPR001878	Zinc finger, CCHC-type	GENE3D	4.10.60.10		coord: 190..207 score: 1.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 192..207 score: 8.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 191..207 score: 3.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 192..207 score: 11
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 176..212 score: 5.9
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 69..150 score: 1.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 68..179 score: 5.1
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 67..149 score: 6.5E-27coord: 221..278 score: 6.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding