Spo26304.1 (mRNA) | SpinachBase

Overview


Name	Spo26304.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Hydroxyproline-rich glycoprotein family protein
Location	chr4 : 90296774 .. 90298223 (-)
Sequence length	647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTAGGCTTAAGCATTATCAGACGTACTGCGGTTCATGTTATTGGAGCAGAAACGGTAGTTTCCCTTGTCTATCCATACTGCACACAATATCATCCATACTGCTAATGTTTGCATAGTGAACATGAGATGTAAATTAATAGTTTCTCACACTTGAATTATTCTACTTATTAAGGGTGAAACTACTTGTTATGAAATTGTGTACACTGAAAGAAACCTTAATTATTCATACCTTTTGTGTATTCTTCATTGCTCATGTACTCTGTGTGACATCGATTTATGACATCAGGTACATGGAGAGTGTGAGGTCATATATTACATATCTAAACCTCGGTTCGAGAACCCAGGCAACAAGTTGTTTAGGATATCTTGCAATACATCAATGATAAGCTAATTATATGATTCACTAGATTTCCCTCTTGATACATCAATGATAACCTGTTAATCATGAAACAAGAACTTTAAAACACGAGAGTGCATTGGTGCTGAAAAGAACTTTCATATGTACTCGCCCATATCTTTTCCCATGAACTCTTCACTCTCTATATTTTCTGCTGACTTATGCATACTTGGCTTTGGCAATAACCCATAACTACTTGGAGATCTAGGAAGGCTTCTCAGTTTTAATTATTTGTTTTATTTTTATGTTCTGTCTTTTTTTTGAGGGAATGTTCTTCTGTCTTTTTAAAATTCTTGCATAATCGTATGATATTATATATTTCTTTCCCGTCCAATCGTCCATTGATTGTCTTGACCATTACTCCGTATGTGGTACTGGTGTTATGTGTTTCATAATGAAAAAATGCTAGTTTTATTATTTCGAGAACTGTGATAATCATCTGATATTTGGATATTTGCAGAGAAATGTGAAAGATAGCCATGAAGATTCTTTTATAAGAGAAAAGAGGATCATCGGGCAATCAGCCCCACTGTTTACTCTGCAGAAATTCAAACCAGCTGAAAAGATAAGACAATTGCAGACATCGTCTTCAAGGAAGTTTCATTCTTATGCTTTGCCTAAACCAGGTGATACAACTAGGATTTCTGCTAGATCTGAGAATCGTGTTTTAAGCACCAAGCCAAATCCTCTGCTTGCTGAAAATTTATATCATTCACCCTCTCTGGTGCCGAACACGTATGAAAATCTTGTACGAACTGAAATGCATAACTTCCATGCATAAAGCTGAGGTTGCTAGAGAGGAGACAGAGTTGGGATTCTATATTGATTTGACGCCCTGTTGTTATCCATTGATTGTATTCTTTGTTAGATAATTTTTTGCAAAGTATTAGGTTTTATATTTGAGGGAGTTTTGATGTAATCATACCCATGTAAATGATATTTTTTTATTCATATTTTTTGAAATATAATAAGTTAACGTGAAAATATTCCCTATTGCTGCTATGGAAGCTGCCGAAGCTAGCTTGTTATAGCAGCGTTTTTTTAATA

mRNA sequence

ATGGTGGTAGGCTTAAGCATTATCAGACGTACTGCGGTTCATGTTATTGGAGCAGAAACGAGAAATGTGAAAGATAGCCATGAAGATTCTTTTATAAGAGAAAAGAGGATCATCGGGCAATCAGCCCCACTGTTTACTCTGCAGAAATTCAAACCAGCTGAAAAGATAAGACAATTGCAGACATCGTCTTCAAGGAAGTTTCATTCTTATGCTTTGCCTAAACCAGGTGATACAACTAGGATTTCTGCTAGATCTGAGAATCGTGTTTTAAGCACCAAGCCAAATCCTCTGCTTGCTGAAAATTTATATCATTCACCCTCTCTGGTGCCGAACACGTATGAAAATCTTGTACGAACTGAAATGCATAACTTCCATGCATAAAGCTGAGGTTGCTAGAGAGGAGACAGAGTTGGGATTCTATATTGATTTGACGCCCTGTTGTTATCCATTGATTGTATTCTTTGTTAGATAATTTTTTGCAAAGTATTAGGTTTTATATTTGAGGGAGTTTTGATGTAATCATACCCATGTAAATGATATTTTTTTATTCATATTTTTTGAAATATAATAAGTTAACGTGAAAATATTCCCTATTGCTGCTATGGAAGCTGCCGAAGCTAGCTTGTTATAGCAGCGTTTTTTTAATA

Coding sequence (CDS)

ATGGTGGTAGGCTTAAGCATTATCAGACGTACTGCGGTTCATGTTATTGGAGCAGAAACGAGAAATGTGAAAGATAGCCATGAAGATTCTTTTATAAGAGAAAAGAGGATCATCGGGCAATCAGCCCCACTGTTTACTCTGCAGAAATTCAAACCAGCTGAAAAGATAAGACAATTGCAGACATCGTCTTCAAGGAAGTTTCATTCTTATGCTTTGCCTAAACCAGGTGATACAACTAGGATTTCTGCTAGATCTGAGAATCGTGTTTTAAGCACCAAGCCAAATCCTCTGCTTGCTGAAAATTTATATCATTCACCCTCTCTGGTGCCGAACACGTATGAAAATCTTGTACGAACTGAAATGCATAACTTCCATGCATAA

Protein sequence

MVVGLSIIRRTAVHVIGAETRNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTRISARSENRVLSTKPNPLLAENLYHSPSLVPNTYENLVRTEMHNFHA

Homology

[Close]

BLAST of Spo26304.1 vs. NCBI nr
Match: gi|902217401|gb|KNA17684.1| (hypothetical protein SOVF_077670 [Spinacia oleracea])

HSP 1 Score: 201.8 bits (512), Expect = 6.900e-49
Identity = 103/106 (97.17%), Postives = 103/106 (97.17%), Query Frame = 1

		  
Query: 21  RNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTR 80
           RNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTR
Sbjct: 8   RNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTR 67

Query: 81  ISARSENRVLSTKPNPLLAENLYHSPSLVPNTYENLVRTEMHNFHA 127
           ISARSENRVLSTKPNPLLAEN YHSPSLVPNTYE LVRTEMHN HA
Sbjct: 68  ISARSENRVLSTKPNPLLAEN-YHSPSLVPNTYEKLVRTEMHNLHA 112

[Close]

BLAST of Spo26304.1 vs. NCBI nr
Match: gi|902231556|gb|KNA22315.1| (hypothetical protein SOVF_035160 [Spinacia oleracea])

HSP 1 Score: 193.4 bits (490), Expect = 2.500e-46
Identity = 100/124 (80.65%), Postives = 108/124 (87.10%), Query Frame = 1

		  
Query: 5   LSIIRRTAVHVIGAETRNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPA--EKIRQLQTS 64
           + + ++    ++  E RNVKDSHEDSFIREKRIIGQSAPLFTLQKFK A  EKIRQLQTS
Sbjct: 1   MKLFQKNICKILIFEQRNVKDSHEDSFIREKRIIGQSAPLFTLQKFKTADLEKIRQLQTS 60

Query: 65  SSRKFHSYALPKPGDTTRISARSENRVLSTKPNPLLAENLYHSPSLVPNTYENLVRTEMH 124
           SSRKFHSY LPKPGDT+RISARSENRVLSTKPN +LAENLYHSPSLVPNTYE LVRTEMH
Sbjct: 61  SSRKFHSYDLPKPGDTSRISARSENRVLSTKPNHVLAENLYHSPSLVPNTYEKLVRTEMH 120

Query: 125 NFHA 127
           N HA
Sbjct: 121 NSHA 124

[Close]

BLAST of Spo26304.1 vs. NCBI nr
Match: gi|902236106|gb|KNA24211.1| (hypothetical protein SOVF_017590 [Spinacia oleracea])

HSP 1 Score: 165.2 bits (417), Expect = 7.200e-38
Identity = 83/100 (83.00%), Postives = 91/100 (91.00%), Query Frame = 1

		  
Query: 21  RNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTR 80
           +NVKDS+EDSFIREKRI+ QSAPLFT +K +PAEKI+QLQ SSS+KFHSYALPKPGDT+R
Sbjct: 296 KNVKDSNEDSFIREKRILSQSAPLFTQRKSEPAEKIKQLQPSSSKKFHSYALPKPGDTSR 355

Query: 81  ISARSENRVLSTKPNPLLAENLYHSPSLVPNTYENLVRTE 121
           ISARSENRV STKPNPL AENLYHS  LVPNTYE LVRTE
Sbjct: 356 ISARSENRVSSTKPNPLQAENLYHSSPLVPNTYEKLVRTE 395

[Close]

BLAST of Spo26304.1 vs. NCBI nr
Match: gi|731343014|ref|XP_010682679.1| (PREDICTED: uncharacterized protein At2g33490-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 118.2 bits (295), Expect = 1.000e-23
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 1

		  
Query: 22  NVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTRI 81
           NVK+SHEDSF+++++I+ QSAPLF  +KF+PAE+IRQL+ SSSRK +SY LPKPGD +RI
Sbjct: 296 NVKNSHEDSFVKDRKILSQSAPLFPQRKFEPAERIRQLRPSSSRKINSYVLPKPGDVSRI 355

Query: 82  SARSENRVLSTKPNPLL---AENLYHSPSLVPNTYENLVRTE 121
           SA S+  V  T+    L   +ENLYHS  L PNTYE LV TE
Sbjct: 356 SAGSQISVSQTQTRSNLNMHSENLYHSYPLQPNTYEKLVGTE 397

[Close]

BLAST of Spo26304.1 vs. NCBI nr
Match: gi|449445582|ref|XP_004140551.1| (PREDICTED: uncharacterized protein At2g33490 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.900e-10
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 1

		  
Query: 12  AVHVIGAETRNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYA 71
           A H + A   N+  +  +SF    R + QSAPLF  +KF  AE++RQ++ SS+RKFH+Y 
Sbjct: 299 AFHHVEALKENLDRNRRNSFSFGGRTVSQSAPLFPDKKFDAAERVRQMRPSSTRKFHTYV 358

Query: 72  LPKPGDTTRISARSENRVLSTKPNPLLAENLY-HSPSLVPNTYENLVRTEMHNFH 126
           LP P DT   ++R     L      +  +NL  HS  L P  Y+ LV  E  + H
Sbjct: 359 LPTPADTKGSNSRVPGNPLPNTIQTIRQQNLMRHSSPLEPRNYDKLVGDENASGH 413

[Close]

BLAST of Spo26304.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFE1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077670 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.800e-49
Identity = 103/106 (97.17%), Postives = 103/106 (97.17%), Query Frame = 1

		  
Query: 21  RNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTR 80
           RNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTR
Sbjct: 8   RNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTR 67

Query: 81  ISARSENRVLSTKPNPLLAENLYHSPSLVPNTYENLVRTEMHNFHA 127
           ISARSENRVLSTKPNPLLAEN YHSPSLVPNTYE LVRTEMHN HA
Sbjct: 68  ISARSENRVLSTKPNPLLAEN-YHSPSLVPNTYEKLVRTEMHNLHA 112

[Close]

BLAST of Spo26304.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRZ2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_035160 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.700e-46
Identity = 100/124 (80.65%), Postives = 108/124 (87.10%), Query Frame = 1

		  
Query: 5   LSIIRRTAVHVIGAETRNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPA--EKIRQLQTS 64
           + + ++    ++  E RNVKDSHEDSFIREKRIIGQSAPLFTLQKFK A  EKIRQLQTS
Sbjct: 1   MKLFQKNICKILIFEQRNVKDSHEDSFIREKRIIGQSAPLFTLQKFKTADLEKIRQLQTS 60

Query: 65  SSRKFHSYALPKPGDTTRISARSENRVLSTKPNPLLAENLYHSPSLVPNTYENLVRTEMH 124
           SSRKFHSY LPKPGDT+RISARSENRVLSTKPN +LAENLYHSPSLVPNTYE LVRTEMH
Sbjct: 61  SSRKFHSYDLPKPGDTSRISARSENRVLSTKPNHVLAENLYHSPSLVPNTYEKLVRTEMH 120

Query: 125 NFHA 127
           N HA
Sbjct: 121 NSHA 124

[Close]

BLAST of Spo26304.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RXH0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_017590 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.000e-38
Identity = 83/100 (83.00%), Postives = 91/100 (91.00%), Query Frame = 1

		  
Query: 21  RNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTR 80
           +NVKDS+EDSFIREKRI+ QSAPLFT +K +PAEKI+QLQ SSS+KFHSYALPKPGDT+R
Sbjct: 296 KNVKDSNEDSFIREKRILSQSAPLFTQRKSEPAEKIKQLQPSSSKKFHSYALPKPGDTSR 355

Query: 81  ISARSENRVLSTKPNPLLAENLYHSPSLVPNTYENLVRTE 121
           ISARSENRV STKPNPL AENLYHS  LVPNTYE LVRTE
Sbjct: 356 ISARSENRVSSTKPNPLQAENLYHSSPLVPNTYEKLVRTE 395

[Close]

BLAST of Spo26304.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C559_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g150000 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.000e-24
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 1

		  
Query: 22  NVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYALPKPGDTTRI 81
           NVK+SHEDSF+++++I+ QSAPLF  +KF+PAE+IRQL+ SSSRK +SY LPKPGD +RI
Sbjct: 296 NVKNSHEDSFVKDRKILSQSAPLFPQRKFEPAERIRQLRPSSSRKINSYVLPKPGDVSRI 355

Query: 82  SARSENRVLSTKPNPLL---AENLYHSPSLVPNTYENLVRTE 121
           SA S+  V  T+    L   +ENLYHS  L PNTYE LV TE
Sbjct: 356 SAGSQISVSQTQTRSNLNMHSENLYHSYPLQPNTYEKLVGTE 397

[Close]

BLAST of Spo26304.1 vs. UniProtKB/TrEMBL
Match: A0A0A0K9I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091980 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.000e-10
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 1

		  
Query: 12  AVHVIGAETRNVKDSHEDSFIREKRIIGQSAPLFTLQKFKPAEKIRQLQTSSSRKFHSYA 71
           A H + A   N+  +  +SF    R + QSAPLF  +KF  AE++RQ++ SS+RKFH+Y 
Sbjct: 299 AFHHVEALKENLDRNRRNSFSFGGRTVSQSAPLFPDKKFDAAERVRQMRPSSTRKFHTYV 358

Query: 72  LPKPGDTTRISARSENRVLSTKPNPLLAENLY-HSPSLVPNTYENLVRTEMHNFH 126
           LP P DT   ++R     L      +  +NL  HS  L P  Y+ LV  E  + H
Sbjct: 359 LPTPADTKGSNSRVPGNPLPNTIQTIRQQNLMRHSSPLEPRNYDKLVGDENASGH 413

[Close]

BLAST of Spo26304.1 vs. ExPASy Swiss-Prot
Match: Y2349_ARATH (Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=4 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.500e-6
Identity = 33/95 (34.74%), Postives = 56/95 (58.95%), Query Frame = 1

		  
Query: 19  ETRNVKDSHEDSFIREKRIIGQSAPLFTLQKFKP-AEKIRQLQTSSSRKFHSYALPKPGD 78
           E  N + SH  SF R+ R + QSAPLF   +  P +EK+ +++++ +RKF++YALP P +
Sbjct: 311 EEGNYRKSH--SFRRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKFNTYALPTPVE 370

Query: 79  TTR----ISARSENRVLSTKPNPLLAENLYHSPSL 109
           TTR     ++     V S+ P   + + +++S  L
Sbjct: 371 TTRSPSSTTSPGHKNVGSSNPTKAITKQIWYSSPL 403

[Close]

BLAST of Spo26304.1 vs. TAIR (Arabidopsis)
Match: AT2G33490.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.400e-7
Identity = 33/95 (34.74%), Postives = 56/95 (58.95%), Query Frame = 1

		  
Query: 19  ETRNVKDSHEDSFIREKRIIGQSAPLFTLQKFKP-AEKIRQLQTSSSRKFHSYALPKPGD 78
           E  N + SH  SF R+ R + QSAPLF   +  P +EK+ +++++ +RKF++YALP P +
Sbjct: 311 EEGNYRKSH--SFRRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKFNTYALPTPVE 370

Query: 79  TTR----ISARSENRVLSTKPNPLLAENLYHSPSL 109
           TTR     ++     V S+ P   + + +++S  L
Sbjct: 371 TTRSPSSTTSPGHKNVGSSNPTKAITKQIWYSSPL 403

The following BLAST results are available for this feature:

BLAST of Spo26304.1 vs. NCBI nr
BLAST of Spo26304.1 vs. UniProtKB/TrEMBL
BLAST of Spo26304.1 vs. ExPASy Swiss-Prot
BLAST of Spo26304.1 vs. TAIR (Arabidopsis)

BLAST of Spo26304.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902217401\|gb\|KNA17684.1\|	6.9e-49	97.1	hypothetical protein SOVF_0776...	[more]
gi\|902231556\|gb\|KNA22315.1\|	2.5e-46	80.6	hypothetical protein SOVF_0351...	[more]
gi\|902236106\|gb\|KNA24211.1\|	7.2e-38	83.0	hypothetical protein SOVF_0175...	[more]
gi\|731343014\|ref\|XP_010682679.1\|	1.0e-23	60.7	PREDICTED: uncharacterized pro...	[more]
gi\|449445582\|ref\|XP_004140551.1\|	2.9e-10	38.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo26304.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RFE1_SPIOL	4.8e-49	97.1	Uncharacterized protein OS=Spi...	[more]
A0A0K9RRZ2_SPIOL	1.7e-46	80.6	Uncharacterized protein OS=Spi...	[more]
A0A0K9RXH0_SPIOL	5.0e-38	83.0	Uncharacterized protein OS=Spi...	[more]
A0A0J8C559_BETVU	7.0e-24	60.7	Uncharacterized protein OS=Bet...	[more]
A0A0A0K9I2_CUCSA	2.0e-10	38.2	Uncharacterized protein OS=Cuc...	[more]

BLAST of Spo26304.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
Y2349_ARATH	2.5e-6	34.7	Uncharacterized protein At2g33...	[more]

BLAST of Spo26304.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G33490.1	1.4e-7	34.7	hydroxyproline-rich glycoprote...	[more]