Spo06745.1 (mRNA) | SpinachBase

Overview


Name	Spo06745.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	F-box protein SKIP5 (SKP1-interacting partner 5)
Location	SpoScf_01609 : 134308 .. 138260 (-)
Sequence length	1577

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTGCCGGGTCTCGCTCACCCGACAGTGAAACCGGTAGCTTGCTCAAAGAAAAGTATAGACAATTTAGACACCATTACACTACCCGAACTTTAATTTATCGTTGATGTCGGTTTGCGGTGCACAAAATTCTGCAAATCCCCATTTCTTCAAACCCCAAAAAAATCCTCAAACCCTAGAATTGTAGATGAAAAATCCCAGATTTTTTTATGAAAGTTGATTTCAATGGCATCAATAGCAGACCAAGAGCAAGAAAACAATGCTTCCGAAGTTATGCTTTTGTCTAAATTTGGGGGAAAACAGAGGAGTAAGAACAAATGGAGGAAGCTTTCGAAGCATTCATCTACTACCTCAGATTCCCTAATCAACACCTTGGATGATGGTTGCCTTATGCACATTTTCAGCTTCCTCTCTCCTCTTCCTGGTTTGTTACTTTACCCTAATATTAATTTTCTCGAATTTCCAATTTGGATTTGAAACCCTAATTGATTGCTTAATTTGGCATTTTTTATCATCATGATCTAATTTAGAGTATTTGAATCTGATTGGTGGTAGACCTAAATTGTATTTGACTGTTTAACTGAGCTAAATTGTGTCTCTTTTGTGAATTTGAGGTTATATGAGGTTGAAAGTCTGAATTTTTGTAATGGGGGGTTTTACTGGATTCTTATTCTCGATTCAGGTTTGTTAAATTGTTGTGAAATGATTAATATTTGGTATTAGAAATGAATGAATTATATATATTCTACGAATAGAAAGGTGTCGTCTTGGTTTTTAAAAGGATCGTATTCGTTTTATAATTTGTTGTCCTTTTAGGGCTATTGCTGTCTGTTGGCCATTGCTTGAGCTGAAATTGACTATAATTTGGATATATCTTTCAGTTGTTCTTGTTCTGAATTAGACTGCTTAATGAATTTTAAAGTTAGTGACTTTTGTCTTGTCTGATTGAATTGGTCTGCCTCGAGAGTTTCCTCAATTATACTTCGTATTACCTTTAAAATAATGTATGAAGAAGTTGGGGTATAGGGTTGACTGGGCAGTTAGTTCAGTTCTGGACTTAGCGAACCGAATTGGCAGTAGTCCTTGTTGGTAGGAGTTCATTTAGCTTATAGAATTGAGCGAGGCAGTTGGTTCTGGAAGATATGCTTGAATATGTTTGCAGTCTTTGCTCTTATTCTCTTTTACAGTTTGTGGTAGGAGTTCATTTAGCTTATAGTCCTTGTTGATAGTGCTATTGTTCAGATGGATATGGTTGTTTTTTGATGGAGGATGGGCTTATATATTAGTTTGTTTCTGCATTATTACTACGGTATATCAGCTGTTGTCACATATTACTTTTGAGTTTGCAGATCGTTATAACACCGCCCTCGTTTGCCACAGATGGCGATTCTTGGCATGCCACCCACACCTATGGTTGCGAGTAGACCGAACTATTAAGGATTTATCAGAACCTGGTGTGTACTCCAGTATTGATGCCGCTGTCTCTGCAGCAAAGTGAGTACAGATTAAACTGGCTGTCTTATGGTTTATCTTTAAAGAATCAATTAAACTCACAGGCTTCTTATATTTCAGGCCTGGTGATACAATCCTGATTGCTTCAGGAGGTGTCCATATTACCTCTAATATTCAGATCAAGAAGCCTCTCTGCCTGGTATATAATAATCCTCTCTTCTCAATAATATCTTTACTTGTTCCTTCTCTACTGTATCCTGGGTTATAAGATTGAACTCATGTTGTAGTTTCTACCCTCCCTTCATTGTGCCAGTCATCTCCTTGGTGTTGTATGACACTTCACCTTTGAATTCCGGAGCTTAATATGATTTACTTTTTTCTGATCTTGATTGTAAGCTTGTACGGTATTGCAAGTTTGCAACTTGTGTGCTGTGTAAATGTCCATCTTCTACGTGGTTGGAGTGTTTCTGTTTTATGCTTTCCTGACCTTTTCCCTCCCATCTTTTTGGTGCGAGGATGGGGACAAGAGAACTATGTAACCAAGTATGGCCGTGCAGATATTTATGCATATTCACACAATTTAGGGCACACCTGCGGGTAGCCGTTTCTTGTCAGTGTTATTGTAGAAGCATAATTCAGTTTCTTCAATCCATCGCCTTTGGTTCCTTCTCTTCCTGTTGGTACAGGTTGGATGCTGTATTTTTTTTTTGCGCACCCACGTTAGCTTGCTTTTGTACTGATTATGTATCATCTTTTACCCAACTATTTGAATACATTCATGAAGAAAGCATATCTAATTAGTTGCATTGCATTTTTTTTTTTGCTCTACAGCACCACACACATCTTATTTTCTTCTTGAGTATTGTTGGGTCAAAGACTTAGATGACAGGGGCAAGTCCCAAGAGCATCCGAATATTTCCCAAAATCATATGGGGTTTAAAAATTAGGTAGATTTGTACTTTTGTGTGCACAACTAGGTATAGTTGTTATTTGTGCGAAACTTAGTTTCAGAAGTAGATTATAATGATGCGATGCGTGGAAGAACTTTTGTTGTTTTTATGCTTCCATCACTCTGCAGTCATTTGTATCTTATTCAAGTATTGTTCTAGCAATTAAGCACATCTTTGAAGCATGTCCTCTGTAAAGTAATATATCGGGTTGTCTTTTCTAATTGAGTTTTTTCGTGATCATCACTATTGCCTTCTAATCTTCTTTTTTCTTTTTTTGCTCAGATAGGTGGAGGTGAACTTCCTGAAGAAACTACTCTTCTTTGTTCCAGGGGCTCTGACAGGTTCGCAAAATTTCTTTGCTGTGCTTTCTACTGCAGGGCTTTATTGAACAAGCCTTTATAAACTGATGCACCCCTGTTAATCTTGATCATTTCTAAGTAGAAAGCACAGATGTTTAAGTTATCCTGGGGTTGGAGCATTTCACGAATCTGATTGAGCTTTTGTTTCCCACTCATCTGTGCCAGACAAACCTTCATGTTAGAGAGAAACACAGATGTTTAAGTTATCCTTGAATAGAGGCTAGGTTGGTGGGTGAAGTAGGGCTTCTTGGTAGTGACCTTATATTATTTTTGGATGCAAATGACAGTATTGTGTGTCCATTGTTTGTTTATTGTTGGGCAGTGCACTGGAACTGCTTTCGACCTGCAAAGTGACAAACTTGACAGTGAAGGCAGAGCTCGGTTGCTGCTTGCTTCATAGGAGTGGGAGGTTGATTATTGACAGTTGTGTCCTCCAATGTGAAACAGATCCTCTGGATTATCTTTCATGCCCCATAGTTAGCTCAGCCACGGGGCCGAAGAAGTTGCCATCATCAACGGCCCGGGGAGATGGTGTCACTGTTTCTCGTACCCGGATTGAAGGTGGGGCCAAAGCAGTTTTGACCATTGGCACCCTTGTCCTGCAGCGTGTACGAGTAATTTATGGCCGTACGTCTGTGCTTTTCTGGTTTGAAGTCGAGCACCAATGATGGTTCGGTTAACTTCATCCTCAGCCCTTGTAACATTCAAGAAAAAACTGTACCTTTTCAATTCATTGTTTGTAAAATTTTCGTTTCCTTGTATTCTGTATGTATATTACTCTATAGTTTATTTTCATCATTCATAAGGCCACATTTGCGAAGACTTTTTAAGGTATTTTGGACTGAAGTTAAGACTTGTTGGTAGTCCAAACCCATCCACTTGTGTATTCAACTTTCGCGGCGACCTTGAGAGTTGAGACAGTGGAACACCATTGGAGTCGAGATAACACAAAAGAATTTGGGAATACACAGTATTTCATTCAGAAAAACGTGATGATGTCCATGTAACACAGTTATTAAATTGAGAGAGATAATTGACACCCTATTTCTATCGCTTCCATACACTTCTACATCAGTAATGAATATATCATGTACTTCCCTCCATTTTATTGTAAGTGTCACAAATGTTGTCCAAATTTAGTTTGTCACATTTTCATATTTGGAAAGCGAAACTCGTATTATAAGTATGTAT

mRNA sequence

CTTTTTGCCGGGTCTCGCTCACCCGACAGTGAAACCGGTAGCTTGCTCAAAGAAAAGTATAGACAATTTAGACACCATTACACTACCCGAACTTTAATTTATCGTTGATGTCGGTTTGCGGTGCACAAAATTCTGCAAATCCCCATTTCTTCAAACCCCAAAAAAATCCTCAAACCCTAGAATTGTAGATGAAAAATCCCAGATTTTTTTATGAAAGTTGATTTCAATGGCATCAATAGCAGACCAAGAGCAAGAAAACAATGCTTCCGAAGTTATGCTTTTGTCTAAATTTGGGGGAAAACAGAGGAGTAAGAACAAATGGAGGAAGCTTTCGAAGCATTCATCTACTACCTCAGATTCCCTAATCAACACCTTGGATGATGGTTGCCTTATGCACATTTTCAGCTTCCTCTCTCCTCTTCCTGATCGTTATAACACCGCCCTCGTTTGCCACAGATGGCGATTCTTGGCATGCCACCCACACCTATGGTTGCGAGTAGACCGAACTATTAAGGATTTATCAGAACCTGGTGTGTACTCCAGTATTGATGCCGCTGTCTCTGCAGCAAAGCCTGGTGATACAATCCTGATTGCTTCAGGAGGTGTCCATATTACCTCTAATATTCAGATCAAGAAGCCTCTCTGCCTGATAGGTGGAGGTGAACTTCCTGAAGAAACTACTCTTCTTTGTTCCAGGGGCTCTGACAGTGCACTGGAACTGCTTTCGACCTGCAAAGTGACAAACTTGACAGTGAAGGCAGAGCTCGGTTGCTGCTTGCTTCATAGGAGTGGGAGGTTGATTATTGACAGTTGTGTCCTCCAATGTGAAACAGATCCTCTGGATTATCTTTCATGCCCCATAGTTAGCTCAGCCACGGGGCCGAAGAAGTTGCCATCATCAACGGCCCGGGGAGATGGTGTCACTGTTTCTCGTACCCGGATTGAAGGTGGGGCCAAAGCAGTTTTGACCATTGGCACCCTTGTCCTGCAGCGTGTACGAGTAATTTATGGCCGTACGTCTGTGCTTTTCTGGTTTGAAGTCGAGCACCAATGATGGTTCGGTTAACTTCATCCTCAGCCCTTGTAACATTCAAGAAAAAACTGTACCTTTTCAATTCATTGTTTGTAAAATTTTCGTTTCCTTGTATTCTGTATGTATATTACTCTATAGTTTATTTTCATCATTCATAAGGCCACATTTGCGAAGACTTTTTAAGGTATTTTGGACTGAAGTTAAGACTTGTTGGTAGTCCAAACCCATCCACTTGTGTATTCAACTTTCGCGGCGACCTTGAGAGTTGAGACAGTGGAACACCATTGGAGTCGAGATAACACAAAAGAATTTGGGAATACACAGTATTTCATTCAGAAAAACGTGATGATGTCCATGTAACACAGTTATTAAATTGAGAGAGATAATTGACACCCTATTTCTATCGCTTCCATACACTTCTACATCAGTAATGAATATATCATGTACTTCCCTCCATTTTATTGTAAGTGTCACAAATGTTGTCCAAATTTAGTTTGTCACATTTTCATATTTGGAAAGCGAAACTCGTATTATAAGTATGTAT

Coding sequence (CDS)

ATGGCATCAATAGCAGACCAAGAGCAAGAAAACAATGCTTCCGAAGTTATGCTTTTGTCTAAATTTGGGGGAAAACAGAGGAGTAAGAACAAATGGAGGAAGCTTTCGAAGCATTCATCTACTACCTCAGATTCCCTAATCAACACCTTGGATGATGGTTGCCTTATGCACATTTTCAGCTTCCTCTCTCCTCTTCCTGATCGTTATAACACCGCCCTCGTTTGCCACAGATGGCGATTCTTGGCATGCCACCCACACCTATGGTTGCGAGTAGACCGAACTATTAAGGATTTATCAGAACCTGGTGTGTACTCCAGTATTGATGCCGCTGTCTCTGCAGCAAAGCCTGGTGATACAATCCTGATTGCTTCAGGAGGTGTCCATATTACCTCTAATATTCAGATCAAGAAGCCTCTCTGCCTGATAGGTGGAGGTGAACTTCCTGAAGAAACTACTCTTCTTTGTTCCAGGGGCTCTGACAGTGCACTGGAACTGCTTTCGACCTGCAAAGTGACAAACTTGACAGTGAAGGCAGAGCTCGGTTGCTGCTTGCTTCATAGGAGTGGGAGGTTGATTATTGACAGTTGTGTCCTCCAATGTGAAACAGATCCTCTGGATTATCTTTCATGCCCCATAGTTAGCTCAGCCACGGGGCCGAAGAAGTTGCCATCATCAACGGCCCGGGGAGATGGTGTCACTGTTTCTCGTACCCGGATTGAAGGTGGGGCCAAAGCAGTTTTGACCATTGGCACCCTTGTCCTGCAGCGTGTACGAGTAATTTATGGCCGTACGTCTGTGCTTTTCTGGTTTGAAGTCGAGCACCAATGA

Protein sequence

MASIADQEQENNASEVMLLSKFGGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFSFLSPLPDRYNTALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTILIASGGVHITSNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAELGCCLLHRSGRLIIDSCVLQCETDPLDYLSCPIVSSATGPKKLPSSTARGDGVTVSRTRIEGGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo06745	Spo06745	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo06745.1	Spo06745.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06745.1.utr5p.1	Spo06745.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06745.1.CDS.5	Spo06745.1.CDS.5	CDS
Spo06745.1.CDS.4	Spo06745.1.CDS.4	CDS
Spo06745.1.CDS.3	Spo06745.1.CDS.3	CDS
Spo06745.1.CDS.2	Spo06745.1.CDS.2	CDS
Spo06745.1.CDS.1	Spo06745.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06745.1.utr3p.1	Spo06745.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06745.1.exon.5	Spo06745.1.exon.5	exon
Spo06745.1.exon.4	Spo06745.1.exon.4	exon
Spo06745.1.exon.3	Spo06745.1.exon.3	exon
Spo06745.1.exon.2	Spo06745.1.exon.2	exon
Spo06745.1.exon.1	Spo06745.1.exon.1	exon

Homology

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BLAST of Spo06745.1 vs. NCBI nr
Match: gi|902182934|gb|KNA10016.1| (hypothetical protein SOVF_148160 [Spinacia oleracea])

HSP 1 Score: 547.4 bits (1409), Expect = 1.500e-152
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1


		  
Query: 1   MASIADQEQENNASEVMLLSKFGGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFS 60
           MASIADQEQENNASEVMLLSKFGGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFS
Sbjct: 1   MASIADQEQENNASEVMLLSKFGGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFS 60

Query: 61  FLSPLPDRYNTALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTI 120
           FLSPLPDRYNTALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTI
Sbjct: 61  FLSPLPDRYNTALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTI 120

Query: 121 LIASGGVHITSNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAEL 180
           LIASGGVHITSNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAEL
Sbjct: 121 LIASGGVHITSNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAEL 180

Query: 181 GCCLLHRSGRLIIDSCVLQCETDPLDYLSCPIVSSATGPKKLPSSTARGDGVTVSRTRIE 240
           GCCLLHRSGRLIIDSCVLQCETDPLDYLSCPIVSSATGPKKLPSSTARGDGVTVSRTRIE
Sbjct: 181 GCCLLHRSGRLIIDSCVLQCETDPLDYLSCPIVSSATGPKKLPSSTARGDGVTVSRTRIE 240

Query: 241 GGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ 276
           GGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ
Sbjct: 241 GGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ 275

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BLAST of Spo06745.1 vs. NCBI nr
Match: gi|731319781|ref|XP_010670456.1| (PREDICTED: F-box protein SKIP5 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 473.0 bits (1216), Expect = 3.500e-130
Identity = 238/278 (85.61%), Postives = 252/278 (90.65%), Query Frame = 1


		  
Query: 1   MASIADQEQENNASEVMLLSKFGGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFS 60
           MASIA+QEQ N ASE+M+  K   KQ+ KNKWRK SKH STT DSLINTLDDGCLMHIFS
Sbjct: 1   MASIAEQEQTNPASEIMVSPKKEEKQKGKNKWRKFSKHLSTTPDSLINTLDDGCLMHIFS 60

Query: 61  FLSPLPDRYNTALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTI 120
           FLSP+PDRYNTALVCHRWRFLACHP LWLRVDRTIKDLSEPGV+SSIDAAVSAA+PGDTI
Sbjct: 61  FLSPIPDRYNTALVCHRWRFLACHPRLWLRVDRTIKDLSEPGVFSSIDAAVSAAQPGDTI 120

Query: 121 LIASGGVHITSNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAEL 180
           LIA+GGVHITSNIQIKKPLCLIG GELPEETTLLCSRGSDSALE  ST K+ NLTVKAEL
Sbjct: 121 LIAAGGVHITSNIQIKKPLCLIGAGELPEETTLLCSRGSDSALEYFSTSKIANLTVKAEL 180

Query: 181 GCCLLHRSGRLIIDSCVLQCETDPLDYLSCPIVSSATGPKKLP---SSTARGDGVTVSRT 240
           GCCLLHRSGRLIIDSC+LQCETDPLDYLSCPIVS++ GPKKLP   SST  GDGVTVS T
Sbjct: 181 GCCLLHRSGRLIIDSCILQCETDPLDYLSCPIVSTSVGPKKLPSSLSSTTLGDGVTVSHT 240

Query: 241 RIEGGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ 276
           RIEGGAKAV T GTLVLQRVRVIYGR+SVLFWF+VEHQ
Sbjct: 241 RIEGGAKAVSTSGTLVLQRVRVIYGRSSVLFWFDVEHQ 278

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BLAST of Spo06745.1 vs. NCBI nr
Match: gi|225465959|ref|XP_002269519.1| (PREDICTED: F-box protein SKIP5 isoform X1 [Vitis vinifera])

HSP 1 Score: 383.3 bits (983), Expect = 3.700e-103
Identity = 186/251 (74.10%), Postives = 216/251 (86.06%), Query Frame = 1


		  
Query: 29  KNKWRKLSKHSST---TSDSLINTLDDGCLMHIFSFLSPLPDRYNTALVCHRWRFLACHP 88
           K KW+     +S+   ++ S I+ LDDGCLMHIFSFLSP+PDRYNTALVCHRW +LACHP
Sbjct: 4   KRKWKHRKSSTSSIPNSNSSSIHNLDDGCLMHIFSFLSPIPDRYNTALVCHRWHYLACHP 63

Query: 89  HLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTILIASGGVHITSNIQIKKPLCLIGGG 148
            LWLRVDR++KD SEPGV+ SI+ AVSAA+PGDTILIA+GG H+ SNIQIKKPLCLIGGG
Sbjct: 64  RLWLRVDRSVKDSSEPGVFPSIEMAVSAARPGDTILIAAGGSHLASNIQIKKPLCLIGGG 123

Query: 149 ELPEETTLLCSRGSDSALELLSTCKVTNLTVKAELGCCLLHRSGRLIIDSCVLQCETDPL 208
           ELP++TTLLCSRGSDSALE LSTCKV NLTVKAELGCCLLHRSGRL ID C+LQCE++PL
Sbjct: 124 ELPDDTTLLCSRGSDSALEFLSTCKVANLTVKAELGCCLLHRSGRLTIDGCILQCESNPL 183

Query: 209 DYLSCPIVSSATGPKKLPSST-ARGDGVTVSRTRIEGGAKAVLTIGTLVLQRVRVIYGRT 268
           DYLSCPIVS+A GP+ L SS  + GD V+VSRTRIEGGAKAV+T G+L LQRVRVIY RT
Sbjct: 184 DYLSCPIVSTAAGPEILTSSVKSHGDSVSVSRTRIEGGAKAVVTSGSLALQRVRVIYART 243

Query: 269 SVLFWFEVEHQ 276
           S+ FWF+V+ +
Sbjct: 244 SIFFWFDVDRR 254

[Close]

BLAST of Spo06745.1 vs. NCBI nr
Match: gi|802574050|ref|XP_012068632.1| (PREDICTED: F-box protein SKIP5 [Jatropha curcas])

HSP 1 Score: 379.8 bits (974), Expect = 4.100e-102
Identity = 187/253 (73.91%), Postives = 217/253 (85.77%), Query Frame = 1


		  
Query: 25  KQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFSFLSPLPDRYNTALVCHRWRFLACH 84
           ++  K KW++  K +S+++ SLINTLDDGCLMHIFSFLSP+PDRYNTALVCHRW +LACH
Sbjct: 2   EEEVKRKWKQ-KKPASSSNSSLINTLDDGCLMHIFSFLSPIPDRYNTALVCHRWHYLACH 61

Query: 85  PHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTILIASGGVHITSNIQIKKPLCLIGG 144
           P LWLRVDR +KDLSEPGVY SI+ AVSAA+PGDTILI++GG H+ SNIQI KPLCLIGG
Sbjct: 62  PRLWLRVDRAVKDLSEPGVYPSIEMAVSAARPGDTILISAGGNHVASNIQINKPLCLIGG 121

Query: 145 GELPEETTLLCSRGSDSALELLSTCKVTNLTVKAELGCCLLHRSGRLIIDSCVLQCETDP 204
           GELP++TTLLCSRGSDSALE LSTCK+ NLTVK ELGCCLLHRSGRL ID C+LQCE++P
Sbjct: 122 GELPDQTTLLCSRGSDSALEFLSTCKLANLTVKTELGCCLLHRSGRLTIDGCILQCESNP 181

Query: 205 LDYLSCPIVSSATGPKKLPSSTAR--GDGVTVSRTRIEGGAKAVLTIGTLVLQRVRVIYG 264
           LDYLSCPIVS+A G  ++ SS+ +  GDGV VS+TRIEGGAKAVLT G L L RVRVIY 
Sbjct: 182 LDYLSCPIVSTA-GENEIFSSSVKTDGDGVHVSQTRIEGGAKAVLTKGDLALHRVRVIYS 241

Query: 265 RTSVLFWFEVEHQ 276
           R  V FWF+VEH+
Sbjct: 242 RAYVYFWFDVEHK 252

[Close]

BLAST of Spo06745.1 vs. NCBI nr
Match: gi|702425827|ref|XP_010067744.1| (PREDICTED: F-box protein SKIP5 [Eucalyptus grandis])

HSP 1 Score: 378.3 bits (970), Expect = 1.200e-101
Identity = 186/252 (73.81%), Postives = 213/252 (84.52%), Query Frame = 1


		  
Query: 23  GGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFSFLSPLPDRYNTALVCHRWRFLA 82
           G +++     ++    S   S + IN LDDGCLMHIFSFLSP+PDRYNTALVCHRW +LA
Sbjct: 3   GEEEQKPAATKRRKPRSGAPSSAPINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWCYLA 62

Query: 83  CHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTILIASGGVHITSNIQIKKPLCLI 142
           CHP LWLRVDR+++D SEPGV+ +I+ AVSAA+PGDTILIA+GG H+ SNIQIKKPLCLI
Sbjct: 63  CHPRLWLRVDRSVRDSSEPGVFPNIELAVSAARPGDTILIAAGGSHVASNIQIKKPLCLI 122

Query: 143 GGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAELGCCLLHRSGRLIIDSCVLQCET 202
           GGGELP+ET LLCSRGSDSALE LSTCK++NLTVKAELGCCLLHRSGRLIID C+LQCET
Sbjct: 123 GGGELPDETMLLCSRGSDSALEFLSTCKLSNLTVKAELGCCLLHRSGRLIIDGCILQCET 182

Query: 203 DPLDYLSCPIVSSATGPKKLPS-STARGDGVTVSRTRIEGGAKAVLTIGTLVLQRVRVIY 262
           DPLDYLSCPIVS+ATG K + S +   GDGV+VSRTRIEGGAKAVLT G L LQRVRVI 
Sbjct: 183 DPLDYLSCPIVSTATGSKVVSSPNGCHGDGVSVSRTRIEGGAKAVLTSGDLALQRVRVIC 242

Query: 263 GRTSVLFWFEVE 274
            RTS+ FWF+VE
Sbjct: 243 ARTSMFFWFDVE 254

[Close]

BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU17_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_148160 PE=4 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 1.000e-152
Identity = 275/275 (100.00%), Postives = 275/275 (100.00%), Query Frame = 1


		  
Query: 1   MASIADQEQENNASEVMLLSKFGGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFS 60
           MASIADQEQENNASEVMLLSKFGGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFS
Sbjct: 1   MASIADQEQENNASEVMLLSKFGGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFS 60

Query: 61  FLSPLPDRYNTALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTI 120
           FLSPLPDRYNTALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTI
Sbjct: 61  FLSPLPDRYNTALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTI 120

Query: 121 LIASGGVHITSNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAEL 180
           LIASGGVHITSNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAEL
Sbjct: 121 LIASGGVHITSNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAEL 180

Query: 181 GCCLLHRSGRLIIDSCVLQCETDPLDYLSCPIVSSATGPKKLPSSTARGDGVTVSRTRIE 240
           GCCLLHRSGRLIIDSCVLQCETDPLDYLSCPIVSSATGPKKLPSSTARGDGVTVSRTRIE
Sbjct: 181 GCCLLHRSGRLIIDSCVLQCETDPLDYLSCPIVSSATGPKKLPSSTARGDGVTVSRTRIE 240

Query: 241 GGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ 276
           GGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ
Sbjct: 241 GGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ 275

[Close]

BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FMM5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g041360 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 2.500e-130
Identity = 238/278 (85.61%), Postives = 252/278 (90.65%), Query Frame = 1


		  
Query: 1   MASIADQEQENNASEVMLLSKFGGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFS 60
           MASIA+QEQ N ASE+M+  K   KQ+ KNKWRK SKH STT DSLINTLDDGCLMHIFS
Sbjct: 1   MASIAEQEQTNPASEIMVSPKKEEKQKGKNKWRKFSKHLSTTPDSLINTLDDGCLMHIFS 60

Query: 61  FLSPLPDRYNTALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTI 120
           FLSP+PDRYNTALVCHRWRFLACHP LWLRVDRTIKDLSEPGV+SSIDAAVSAA+PGDTI
Sbjct: 61  FLSPIPDRYNTALVCHRWRFLACHPRLWLRVDRTIKDLSEPGVFSSIDAAVSAAQPGDTI 120

Query: 121 LIASGGVHITSNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAEL 180
           LIA+GGVHITSNIQIKKPLCLIG GELPEETTLLCSRGSDSALE  ST K+ NLTVKAEL
Sbjct: 121 LIAAGGVHITSNIQIKKPLCLIGAGELPEETTLLCSRGSDSALEYFSTSKIANLTVKAEL 180

Query: 181 GCCLLHRSGRLIIDSCVLQCETDPLDYLSCPIVSSATGPKKLP---SSTARGDGVTVSRT 240
           GCCLLHRSGRLIIDSC+LQCETDPLDYLSCPIVS++ GPKKLP   SST  GDGVTVS T
Sbjct: 181 GCCLLHRSGRLIIDSCILQCETDPLDYLSCPIVSTSVGPKKLPSSLSSTTLGDGVTVSHT 240

Query: 241 RIEGGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ 276
           RIEGGAKAV T GTLVLQRVRVIYGR+SVLFWF+VEHQ
Sbjct: 241 RIEGGAKAVSTSGTLVLQRVRVIYGRSSVLFWFDVEHQ 278

[Close]

BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Match: D7TXB8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0139g00260 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 2.600e-103
Identity = 186/251 (74.10%), Postives = 216/251 (86.06%), Query Frame = 1


		  
Query: 29  KNKWRKLSKHSST---TSDSLINTLDDGCLMHIFSFLSPLPDRYNTALVCHRWRFLACHP 88
           K KW+     +S+   ++ S I+ LDDGCLMHIFSFLSP+PDRYNTALVCHRW +LACHP
Sbjct: 4   KRKWKHRKSSTSSIPNSNSSSIHNLDDGCLMHIFSFLSPIPDRYNTALVCHRWHYLACHP 63

Query: 89  HLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTILIASGGVHITSNIQIKKPLCLIGGG 148
            LWLRVDR++KD SEPGV+ SI+ AVSAA+PGDTILIA+GG H+ SNIQIKKPLCLIGGG
Sbjct: 64  RLWLRVDRSVKDSSEPGVFPSIEMAVSAARPGDTILIAAGGSHLASNIQIKKPLCLIGGG 123

Query: 149 ELPEETTLLCSRGSDSALELLSTCKVTNLTVKAELGCCLLHRSGRLIIDSCVLQCETDPL 208
           ELP++TTLLCSRGSDSALE LSTCKV NLTVKAELGCCLLHRSGRL ID C+LQCE++PL
Sbjct: 124 ELPDDTTLLCSRGSDSALEFLSTCKVANLTVKAELGCCLLHRSGRLTIDGCILQCESNPL 183

Query: 209 DYLSCPIVSSATGPKKLPSST-ARGDGVTVSRTRIEGGAKAVLTIGTLVLQRVRVIYGRT 268
           DYLSCPIVS+A GP+ L SS  + GD V+VSRTRIEGGAKAV+T G+L LQRVRVIY RT
Sbjct: 184 DYLSCPIVSTAAGPEILTSSVKSHGDSVSVSRTRIEGGAKAVVTSGSLALQRVRVIYART 243

Query: 269 SVLFWFEVEHQ 276
           S+ FWF+V+ +
Sbjct: 244 SIFFWFDVDRR 254

[Close]

BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Match: A0A067L7M8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24514 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.800e-102
Identity = 187/253 (73.91%), Postives = 217/253 (85.77%), Query Frame = 1


		  
Query: 25  KQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFSFLSPLPDRYNTALVCHRWRFLACH 84
           ++  K KW++  K +S+++ SLINTLDDGCLMHIFSFLSP+PDRYNTALVCHRW +LACH
Sbjct: 2   EEEVKRKWKQ-KKPASSSNSSLINTLDDGCLMHIFSFLSPIPDRYNTALVCHRWHYLACH 61

Query: 85  PHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTILIASGGVHITSNIQIKKPLCLIGG 144
           P LWLRVDR +KDLSEPGVY SI+ AVSAA+PGDTILI++GG H+ SNIQI KPLCLIGG
Sbjct: 62  PRLWLRVDRAVKDLSEPGVYPSIEMAVSAARPGDTILISAGGNHVASNIQINKPLCLIGG 121

Query: 145 GELPEETTLLCSRGSDSALELLSTCKVTNLTVKAELGCCLLHRSGRLIIDSCVLQCETDP 204
           GELP++TTLLCSRGSDSALE LSTCK+ NLTVK ELGCCLLHRSGRL ID C+LQCE++P
Sbjct: 122 GELPDQTTLLCSRGSDSALEFLSTCKLANLTVKTELGCCLLHRSGRLTIDGCILQCESNP 181

Query: 205 LDYLSCPIVSSATGPKKLPSSTAR--GDGVTVSRTRIEGGAKAVLTIGTLVLQRVRVIYG 264
           LDYLSCPIVS+A G  ++ SS+ +  GDGV VS+TRIEGGAKAVLT G L L RVRVIY 
Sbjct: 182 LDYLSCPIVSTA-GENEIFSSSVKTDGDGVHVSQTRIEGGAKAVLTKGDLALHRVRVIYS 241

Query: 265 RTSVLFWFEVEHQ 276
           R  V FWF+VEH+
Sbjct: 242 RAYVYFWFDVEHK 252

[Close]

BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Match: A0A059BIU3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03245 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 8.200e-102
Identity = 186/252 (73.81%), Postives = 213/252 (84.52%), Query Frame = 1


		  
Query: 23  GGKQRSKNKWRKLSKHSSTTSDSLINTLDDGCLMHIFSFLSPLPDRYNTALVCHRWRFLA 82
           G +++     ++    S   S + IN LDDGCLMHIFSFLSP+PDRYNTALVCHRW +LA
Sbjct: 3   GEEEQKPAATKRRKPRSGAPSSAPINNLDDGCLMHIFSFLSPIPDRYNTALVCHRWCYLA 62

Query: 83  CHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTILIASGGVHITSNIQIKKPLCLI 142
           CHP LWLRVDR+++D SEPGV+ +I+ AVSAA+PGDTILIA+GG H+ SNIQIKKPLCLI
Sbjct: 63  CHPRLWLRVDRSVRDSSEPGVFPNIELAVSAARPGDTILIAAGGSHVASNIQIKKPLCLI 122

Query: 143 GGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAELGCCLLHRSGRLIIDSCVLQCET 202
           GGGELP+ET LLCSRGSDSALE LSTCK++NLTVKAELGCCLLHRSGRLIID C+LQCET
Sbjct: 123 GGGELPDETMLLCSRGSDSALEFLSTCKLSNLTVKAELGCCLLHRSGRLIIDGCILQCET 182

Query: 203 DPLDYLSCPIVSSATGPKKLPS-STARGDGVTVSRTRIEGGAKAVLTIGTLVLQRVRVIY 262
           DPLDYLSCPIVS+ATG K + S +   GDGV+VSRTRIEGGAKAVLT G L LQRVRVI 
Sbjct: 183 DPLDYLSCPIVSTATGSKVVSSPNGCHGDGVSVSRTRIEGGAKAVLTSGDLALQRVRVIC 242

Query: 263 GRTSVLFWFEVE 274
            RTS+ FWF+VE
Sbjct: 243 ARTSMFFWFDVE 254

[Close]

BLAST of Spo06745.1 vs. ExPASy Swiss-Prot
Match: SKIP5_ARATH (F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 5.300e-94
Identity = 176/276 (63.77%), Postives = 215/276 (77.90%), Query Frame = 1


		  
Query: 15  EVMLLSKFGGKQRSK----NKWRKLSKHSSTTSDSLINTLDDGCLMHIFSFLSPLPDRYN 74
           E+  +SK   K+  +    +K +K  K  S TS   +N LDDGCLMHI SFLSP+PDRYN
Sbjct: 2   ELHEISKLDNKKHPERIVESKMKKRMKPYSLTS---LNNLDDGCLMHILSFLSPIPDRYN 61

Query: 75  TALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTILIASGGVHIT 134
           TALVCHRWR+LACHP LWLRVDR +KDLS+PGV+ +I++AVSAA+PGDTILI +GG +  
Sbjct: 62  TALVCHRWRYLACHPRLWLRVDRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRV 121

Query: 135 SNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAELGCCLLHRSGR 194
           SNIQIKKPLCL+GGGE+P+ETTL+C+RGSDSALELLSTCK+ NLTVKAELGCCLLHRSGR
Sbjct: 122 SNIQIKKPLCLVGGGEIPDETTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGR 181

Query: 195 LIIDSCVLQCETDPLDYLSCPIVSSA-----------TGPKKLPSSTARGDGVTVSRTRI 254
           L ID CVLQCET+PLD+LSCPIVS+A              K+  +   + + VTV +TRI
Sbjct: 182 LTIDGCVLQCETNPLDHLSCPIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRI 241

Query: 255 EGGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ 276
           EGGAKAV T G LVLQRVRV+Y +  + FWF+V+++
Sbjct: 242 EGGAKAVSTRGDLVLQRVRVMYSKAYLYFWFDVDYE 274

[Close]

BLAST of Spo06745.1 vs. TAIR (Arabidopsis)
Match: AT3G54480.1 (SKP1/ASK-interacting protein 5)

HSP 1 Score: 345.5 bits (885), Expect = 3.000e-95
Identity = 176/276 (63.77%), Postives = 215/276 (77.90%), Query Frame = 1


		  
Query: 15  EVMLLSKFGGKQRSK----NKWRKLSKHSSTTSDSLINTLDDGCLMHIFSFLSPLPDRYN 74
           E+  +SK   K+  +    +K +K  K  S TS   +N LDDGCLMHI SFLSP+PDRYN
Sbjct: 2   ELHEISKLDNKKHPERIVESKMKKRMKPYSLTS---LNNLDDGCLMHILSFLSPIPDRYN 61

Query: 75  TALVCHRWRFLACHPHLWLRVDRTIKDLSEPGVYSSIDAAVSAAKPGDTILIASGGVHIT 134
           TALVCHRWR+LACHP LWLRVDR +KDLS+PGV+ +I++AVSAA+PGDTILI +GG +  
Sbjct: 62  TALVCHRWRYLACHPRLWLRVDRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGNYRV 121

Query: 135 SNIQIKKPLCLIGGGELPEETTLLCSRGSDSALELLSTCKVTNLTVKAELGCCLLHRSGR 194
           SNIQIKKPLCL+GGGE+P+ETTL+C+RGSDSALELLSTCK+ NLTVKAELGCCLLHRSGR
Sbjct: 122 SNIQIKKPLCLVGGGEIPDETTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGR 181

Query: 195 LIIDSCVLQCETDPLDYLSCPIVSSA-----------TGPKKLPSSTARGDGVTVSRTRI 254
           L ID CVLQCET+PLD+LSCPIVS+A              K+  +   + + VTV +TRI
Sbjct: 182 LTIDGCVLQCETNPLDHLSCPIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRI 241

Query: 255 EGGAKAVLTIGTLVLQRVRVIYGRTSVLFWFEVEHQ 276
           EGGAKAV T G LVLQRVRV+Y +  + FWF+V+++
Sbjct: 242 EGGAKAVSTRGDLVLQRVRVMYSKAYLYFWFDVDYE 274

The following BLAST results are available for this feature:

BLAST of Spo06745.1 vs. NCBI nr
BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
BLAST of Spo06745.1 vs. ExPASy Swiss-Prot
BLAST of Spo06745.1 vs. TAIR (Arabidopsis)

BLAST of Spo06745.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902182934\|gb\|KNA10016.1\|	1.5e-152	100.	hypothetical protein SOVF_1481...	[more]
gi\|731319781\|ref\|XP_010670456.1\|	3.5e-130	85.6	PREDICTED: F-box protein SKIP5...	[more]
gi\|225465959\|ref\|XP_002269519.1\|	3.7e-103	74.1	PREDICTED: F-box protein SKIP5...	[more]
gi\|802574050\|ref\|XP_012068632.1\|	4.1e-102	73.9	PREDICTED: F-box protein SKIP5...	[more]
gi\|702425827\|ref\|XP_010067744.1\|	1.2e-101	73.8	PREDICTED: F-box protein SKIP5...	[more]

BLAST of Spo06745.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QU17_SPIOL	1.0e-152	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8FMM5_BETVU	2.5e-130	85.6	Uncharacterized protein OS=Bet...	[more]
D7TXB8_VITVI	2.6e-103	74.1	Putative uncharacterized prote...	[more]
A0A067L7M8_JATCU	2.8e-102	73.9	Uncharacterized protein OS=Jat...	[more]
A0A059BIU3_EUCGR	8.2e-102	73.8	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo06745.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
SKIP5_ARATH	5.3e-94	63.7	F-box protein SKIP5 OS=Arabido...	[more]

BLAST of Spo06745.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G54480.1	3.0e-95	63.7	SKP1/ASK-interacting protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 54..92 score: 5.
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 37..98 score: 1.96
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 101..242 score: 1.
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 99..197 score: 2.
None	No IPR available	GENE3D	1.20.1280.50		coord: 48..88 score: 1.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0005515	protein binding