Overview
| Name | Spo15455.1 |
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| Type | mRNA |
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| Organism | Spinacia oleracea (Spinach) |
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| Description | Unknown protein |
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| Location | chr4 : 107583143 .. 107584318 (+) |
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| Sequence length | 1024 |
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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. TTCTAGAGTTTTTTCCCTTTAAAAAAAATAACAAATTAAATTTGGAATGCAAAAATGCAAAAACATACGGAATGAAAAATGCTCATCTAGCTATGAATTGAAATAGTGCACACATCACTTACTTTCTTTCTCATCTTAACTCATCAGCAAAATCATTCAAACTCTATCCGATTTAACACAAAGTTGAAGTTTCAGATCCAATGCTACCAATTAATTATGCCTAAAGTATCTCAAAATCAGGTAATTATAGTGTCTATATTCTCAAGGCTTTTCTTAATTAGAAAATTATGTGAGTTTGGTTTATGTTTAATTGGGTTGAGTTATTTTCCTTTTTTAGAGTTTCTTGCTTGAATTCTGGAGTGAAAATGAGTAAATATACAGAATAATTGCAGAGAACAGGGACATACCTTGCGATTTGCCGGCGTTTTCCTCGCCACCACCGAAGCCGTTTTACCTCTCCTAGCCTTCACTCCCTTCGCCGCCGCTGCCGGAGCTTGTCCCGCCTTAGCTGCTCCTGGATCTCCCATACTCGTCGGCCGACCACTTTAACTCCCATTCGCTTCTCTTCTAGCCGAATTATGGGTGGAGCGGAGGTGGAGCACCACGGGTATCATTGCCGGAATTATGGGTTGAGCGGAGGTGGAGCAGCACGGGTCATCATTGCGGGTCTGACATTTCTCTTTTTTGCCGGAATTCTAGGTTTAGCGTAGGCCCTTTTTTTGGAATTCTAGGTTGAAGGTGGCCGGAAATTTTTGCTGGATTCTGGGTTGAAGGTGCCTGAATCTGGTTGTTGGGTGTATTTACCTCTACTGTATTGATGGAGGGAGTTGGATTGATGGGGTAAAAAATGTAAAAAAGTAAAGGGGTAAATATAGAGAGGAGTAGTTGTGGAATTTAATAGGGCGAGTGAGTATTTATGGGGCGGAGTTTAGCGCTCCACCTTTTAATATTGTAAGACCATGTGCATCCTTGACCTTCGGTCAAGTGTCAAATAATATATATCTCTCATCCTTCTCCTTCTTCCACCTCATATTCCACTAACTTGACATACCACTTGTAACACCCCGACAATTCTCTCTTTTCTAAAATAACCTTTTTATATAAAACGTAGAGAATTATCAAGGCATTATCGCCCGTGTGAAAACGTAACGGCTTATTCAGAATTTTACAGCGGAA mRNA sequence TTCTAGAGTTTTTTCCCTTTAAAAAAAATAACAAATTAAATTTGGAATGCAAAAATGCAAAAACATACGGAATGAAAAATGCTCATCTAGCTATGAATTGAAATAGTGCACACATCACTTACTTTCTTTCTCATCTTAACTCATCAGCAAAATCATTCAAACTCTATCCGATTTAACACAAAGTTGAAGTTTCAGATCCAATGCTACCAATTAATTATGCCTAAAGTATCTCAAAATCAGAGAACAGGGACATACCTTGCGATTTGCCGGCGTTTTCCTCGCCACCACCGAAGCCGTTTTACCTCTCCTAGCCTTCACTCCCTTCGCCGCCGCTGCCGGAGCTTGTCCCGCCTTAGCTGCTCCTGGATCTCCCATACTCGTCGGCCGACCACTTTAACTCCCATTCGCTTCTCTTCTAGCCGAATTATGGGTGGAGCGGAGGTGGAGCACCACGGGTATCATTGCCGGAATTATGGGTTGAGCGGAGGTGGAGCAGCACGGGTCATCATTGCGGGTCTGACATTTCTCTTTTTTGCCGGAATTCTAGGTTTAGCGTAGGCCCTTTTTTTGGAATTCTAGGTTGAAGGTGGCCGGAAATTTTTGCTGGATTCTGGGTTGAAGGTGCCTGAATCTGGTTGTTGGGTGTATTTACCTCTACTGTATTGATGGAGGGAGTTGGATTGATGGGGTAAAAAATGTAAAAAAGTAAAGGGGTAAATATAGAGAGGAGTAGTTGTGGAATTTAATAGGGCGAGTGAGTATTTATGGGGCGGAGTTTAGCGCTCCACCTTTTAATATTGTAAGACCATGTGCATCCTTGACCTTCGGTCAAGTGTCAAATAATATATATCTCTCATCCTTCTCCTTCTTCCACCTCATATTCCACTAACTTGACATACCACTTGTAACACCCCGACAATTCTCTCTTTTCTAAAATAACCTTTTTATATAAAACGTAGAGAATTATCAAGGCATTATCGCCCGTGTGAAAACGTAACGGCTTATTCAGAATTTTACAGCGGAA Coding sequence (CDS) ATGCCTAAAGTATCTCAAAATCAGAGAACAGGGACATACCTTGCGATTTGCCGGCGTTTTCCTCGCCACCACCGAAGCCGTTTTACCTCTCCTAGCCTTCACTCCCTTCGCCGCCGCTGCCGGAGCTTGTCCCGCCTTAGCTGCTCCTGGATCTCCCATACTCGTCGGCCGACCACTTTAACTCCCATTCGCTTCTCTTCTAGCCGAATTATGGGTGGAGCGGAGGTGGAGCACCACGGGTATCATTGCCGGAATTATGGGTTGAGCGGAGGTGGAGCAGCACGGGTCATCATTGCGGGTCTGACATTTCTCTTTTTTGCCGGAATTCTAGGTTTAGCGTAG Protein sequence MPKVSQNQRTGTYLAICRRFPRHHRSRFTSPSLHSLRRRCRSLSRLSCSWISHTRRPTTLTPIRFSSSRIMGGAEVEHHGYHCRNYGLSGGGAARVIIAGLTFLFFAGILGLA
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
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| Spo15455 | Spo15455 | gene |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
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| Spo15455.1 | Spo15455.1-protein | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| Spo15455.1.exon.1 | Spo15455.1.exon.1 | exon |
| Spo15455.1.exon.2 | Spo15455.1.exon.2 | exon |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| Spo15455.1.utr5p.1 | Spo15455.1.utr5p.1 | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| Spo15455.1.CDS.1 | Spo15455.1.CDS.1 | CDS |
| Spo15455.1.CDS.2 | Spo15455.1.CDS.2 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
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| Spo15455.1.utr3p.1 | Spo15455.1.utr3p.1 | three_prime_UTR |
Homology
BLAST of Spo15455.1 vs. NCBI nr
Match: gi|902161081|gb|KNA06517.1| (hypothetical protein SOVF_180380, partial [Spinacia oleracea]) HSP 1 Score: 214.9 bits (546), Expect = 7.100e-53 Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 1
Query: 1 MPKVSQNQRTGTYLAICRRFPRHHRSRFTSPSLHSLRRRCRSLSRLSCSWISHTRRPTTL 60
MPKVSQNQRTGTYLAICR FPRHHRSRF SPSLHSLRRRCRSLSRLSC WISHTRRPTTL
Sbjct: 24 MPKVSQNQRTGTYLAICRLFPRHHRSRFISPSLHSLRRRCRSLSRLSCCWISHTRRPTTL 83
Query: 61 TPIRFSSSRIMGGAEVEHHGYHCRNYGLSGGGAARVIIAGLTFLFFAGILGLA 114
TP+RFSSSRIMGGAEVEHHGYHCRNYGLS GGA RVIIAGLTFLFFAGILGLA
Sbjct: 84 TPLRFSSSRIMGGAEVEHHGYHCRNYGLSEGGAPRVIIAGLTFLFFAGILGLA 136
BLAST of Spo15455.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QH05_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_180380 PE=4 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 5.000e-53 Identity = 107/113 (94.69%), Postives = 108/113 (95.58%), Query Frame = 1
Query: 1 MPKVSQNQRTGTYLAICRRFPRHHRSRFTSPSLHSLRRRCRSLSRLSCSWISHTRRPTTL 60
MPKVSQNQRTGTYLAICR FPRHHRSRF SPSLHSLRRRCRSLSRLSC WISHTRRPTTL
Sbjct: 24 MPKVSQNQRTGTYLAICRLFPRHHRSRFISPSLHSLRRRCRSLSRLSCCWISHTRRPTTL 83
Query: 61 TPIRFSSSRIMGGAEVEHHGYHCRNYGLSGGGAARVIIAGLTFLFFAGILGLA 114
TP+RFSSSRIMGGAEVEHHGYHCRNYGLS GGA RVIIAGLTFLFFAGILGLA
Sbjct: 84 TPLRFSSSRIMGGAEVEHHGYHCRNYGLSEGGAPRVIIAGLTFLFFAGILGLA 136
The following BLAST results are available for this feature:
BLAST of Spo15455.1 vs. NCBI nr
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
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BLAST of Spo15455.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
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BLAST of Spo15455.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
| Match Name | E-value | Identity | Description | |
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BLAST of Spo15455.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
| Match Name | E-value | Identity | Description | |
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