Spo17571.1 (mRNA)

Overview
NameSpo17571.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 139243 .. 140269 (+)
Sequence length854
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTGCAGGTGGAGGTCCTAGAGGAAGTTCAAGCTCAGGTAAGGCTATCTGAGCATGTTTTAGATTTTAATACGTACATGTCACATTTATTCATCCCGGCATTACTGAAACTTTGATAGTTACTTACACACGGGTCGTGCGGACTGGGGTACCAAGGGTGCATGGAGGAAGACATCATCTTTTAGTTGGCCTACCCTTCCTTCTGGTTTTGTTTGGAACAGTTGGACTTGGAGGTATAAGTGTTACCAGGTACTAAACATAAGCCTTGACGATGTAGAATACTGAAACTACTTTTCTTTTAGCTCAATGTTTACTTCTGATATGGTTACTTTGCTTCTCAGGGCTTATAGAAAGGAAAAAGAAGCATACCCATCTCATAATCCTTTTCTCCCTTGATCCAATTACTGGACAAAACAACTTCTTAGAACAGCATAGACTGCTCAGAAATGGAATAGCACTTTTGACCAAATACTATTGCTCATCATTGTCCATGTTTTAGTAATATTGAAATCAGATTTTTGACATTGCCATGTGGTAAATAATGTAATACTTCATACTACCTATTACAATTGTTTCATTCCTGTTCTGATCTCCTGATATGAGGCTAACCATGATTGAAATCGGTTCTTAAGATTTCAACCGTTGTTAGTAAGATATACTTGTACTTCGTATGACGCACGTGATTAACTGAAAAGCATAACACGCGTGTTGTTAAAAATCACTGTTGTACGAGTACAGCAACTTATAGATGAACACCACCTTTATGTCATGGATCGCCTCACACACCATCGCATGCAGCAACCAGTAACATGCACGGTATTTAGCAACGCAAGGCATCGCAGTGCACCGCCAAGGATGGCTGCAAAGGCGTTGGGCATCATCGGGCTACATGGTGTTCCATCGGAAATTGAGTCGTGTGGGTCGTCAAGGCAACGGAGTGCATCGGGTGCACGGTAGTGAACGTTGGCACTATACGCATAGGCAGCATGATAGGCATGAGGGCAGCGGCCATGACTAACACC

mRNA sequence

ATGGAATCTGCAGGTGGAGGTCCTAGAGGAAGTTCAAGCTCAGTTACTTACACACGGGTCGTGCGGACTGGGGTACCAAGGGTGCATGGAGGAAGACATCATCTTTTAGTTGGCCTACCCTTCCTTCTGGTTTTGTTTGGAACAGTTGGACTTGGAGGTATAAGTGTTACCAGGGCTTATAGAAAGGAAAAAGAAGCATACCCATCTCATAATCCTTTTCTCCCTTGATCCAATTACTGGACAAAACAACTTCTTAGAACAGCATAGACTGCTCAGAAATGGAATAGCACTTTTGACCAAATACTATTGCTCATCATTGTCCATGTTTTAGTAATATTGAAATCAGATTTTTGACATTGCCATGTGGTAAATAATGTAATACTTCATACTACCTATTACAATTGTTTCATTCCTGTTCTGATCTCCTGATATGAGGCTAACCATGATTGAAATCGGTTCTTAAGATTTCAACCGTTGTTAGTAAGATATACTTGTACTTCGTATGACGCACGTGATTAACTGAAAAGCATAACACGCGTGTTGTTAAAAATCACTGTTGTACGAGTACAGCAACTTATAGATGAACACCACCTTTATGTCATGGATCGCCTCACACACCATCGCATGCAGCAACCAGTAACATGCACGGTATTTAGCAACGCAAGGCATCGCAGTGCACCGCCAAGGATGGCTGCAAAGGCGTTGGGCATCATCGGGCTACATGGTGTTCCATCGGAAATTGAGTCGTGTGGGTCGTCAAGGCAACGGAGTGCATCGGGTGCACGGTAGTGAACGTTGGCACTATACGCATAGGCAGCATGATAGGCATGAGGGCAGCGGCCATGACTAACACC

Coding sequence (CDS)

ATGGAATCTGCAGGTGGAGGTCCTAGAGGAAGTTCAAGCTCAGTTACTTACACACGGGTCGTGCGGACTGGGGTACCAAGGGTGCATGGAGGAAGACATCATCTTTTAGTTGGCCTACCCTTCCTTCTGGTTTTGTTTGGAACAGTTGGACTTGGAGGTATAAGTGTTACCAGGGCTTATAGAAAGGAAAAAGAAGCATACCCATCTCATAATCCTTTTCTCCCTTGA

Protein sequence

MESAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAYRKEKEAYPSHNPFLP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo17571Spo17571gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo17571.1Spo17571.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17571.1.exon.1Spo17571.1.exon.1exon
Spo17571.1.exon.2Spo17571.1.exon.2exon
Spo17571.1.exon.3Spo17571.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17571.1.CDS.1Spo17571.1.CDS.1CDS
Spo17571.1.CDS.2Spo17571.1.CDS.2CDS
Spo17571.1.CDS.3Spo17571.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo17571.1.utr3p.1Spo17571.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo17571.1 vs. NCBI nr
Match: gi|902223804|gb|KNA19577.1| (hypothetical protein SOVF_059780 isoform A [Spinacia oleracea])

HSP 1 Score: 155.6 bits (392), Expect = 3.400e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

		  

Query: 1  MESAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAY 60
          MESAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAY
Sbjct: 1  MESAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAY 60

Query: 61 RKEKEAYPSHNPFLP 76
          RKEKEAYPSHNPFLP
Sbjct: 61 RKEKEAYPSHNPFLP 75
[Close]
BLAST of Spo17571.1 vs. NCBI nr
Match: gi|902223805|gb|KNA19578.1| (hypothetical protein SOVF_059780 isoform B [Spinacia oleracea])

HSP 1 Score: 150.2 bits (378), Expect = 1.400e-33
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1 

		  

Query: 3   SAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAYRK 62
           +AGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAYRK
Sbjct: 63  TAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAYRK 122

Query: 63  EKEAYPSHNPFLP 76
           EKEAYPSHNPFLP
Sbjct: 123 EKEAYPSHNPFLP 135
[Close]
BLAST of Spo17571.1 vs. NCBI nr
Match: gi|731336904|ref|XP_010679507.1| (PREDICTED: uncharacterized protein LOC104894862 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 110.5 bits (275), Expect = 1.300e-21
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1 

		  

Query: 10  GSSSSVTYTRVVRTGVPRVHGG-RHHLLVGLPFLLVLFGTVGLGGISVTRAYRKEKEAYP 69
           G  +SVTYTRVVRTGVPRVHGG RHHL VGLPF+ ++ GTVGLGG++V R YRKEKEA P
Sbjct: 66  GDLTSVTYTRVVRTGVPRVHGGGRHHLSVGLPFVFIILGTVGLGGLNVIRTYRKEKEANP 125

Query: 70  SHNPFLP 76
           SHNPFLP
Sbjct: 126 SHNPFLP 132
[Close]
BLAST of Spo17571.1 vs. NCBI nr
Match: gi|823124431|ref|XP_012480121.1| (PREDICTED: uncharacterized protein LOC105795160 isoform X1 [Gossypium raimondii])

HSP 1 Score: 104.0 bits (258), Expect = 1.200e-19
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1 

		  

Query: 6   GGPRGSSSSVTYTRVVRTGVPRVHGGRHHL-LVGLPFLLVLFGTVGLGGISVTRAYRKEK 65
           G  RG S S TY+ VVRTGVP+ HGGR +  L+ +PFLL++ GTVGLGG++ TRAYRK+K
Sbjct: 64  GSGRGGSYSATYSHVVRTGVPKAHGGRRNRGLIQIPFLLIVLGTVGLGGLNATRAYRKQK 123

Query: 66  EAYPSHNPFLP 76
           EAYPSHNPFLP
Sbjct: 124 EAYPSHNPFLP 134
[Close]
BLAST of Spo17571.1 vs. NCBI nr
Match: gi|223545678|gb|EEF47182.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 102.8 bits (255), Expect = 2.600e-19
Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = 1 

		  

Query: 6  GGPRGSSSSVTYTRVVRTGVPRVHGGR-HHLLVGLPFLLVLFGTVGLGGISVTRAYRKEK 65
          GG    S+S TY+RVVRTG+PR HGGR +H+L+ +PFL ++ GTVGLGG++ +RAY+K+K
Sbjct: 8  GGRGEDSTSATYSRVVRTGMPRAHGGRSNHILIRIPFLFIILGTVGLGGLNASRAYKKQK 67

Query: 66 EAYPSHNPFLP 76
          E YPSHNPFLP
Sbjct: 68 ETYPSHNPFLP 78
[Close]
BLAST of Spo17571.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RL55_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_059780 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.400e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

		  

Query: 1  MESAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAY 60
          MESAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAY
Sbjct: 1  MESAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAY 60

Query: 61 RKEKEAYPSHNPFLP 76
          RKEKEAYPSHNPFLP
Sbjct: 61 RKEKEAYPSHNPFLP 75
[Close]
BLAST of Spo17571.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJB7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_059780 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.900e-34
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1 

		  

Query: 3   SAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAYRK 62
           +AGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAYRK
Sbjct: 63  TAGGGPRGSSSSVTYTRVVRTGVPRVHGGRHHLLVGLPFLLVLFGTVGLGGISVTRAYRK 122

Query: 63  EKEAYPSHNPFLP 76
           EKEAYPSHNPFLP
Sbjct: 123 EKEAYPSHNPFLP 135
[Close]
BLAST of Spo17571.1 vs. UniProtKB/TrEMBL
Match: B9RN59_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1343900 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.800e-19
Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = 1 

		  

Query: 6  GGPRGSSSSVTYTRVVRTGVPRVHGGR-HHLLVGLPFLLVLFGTVGLGGISVTRAYRKEK 65
          GG    S+S TY+RVVRTG+PR HGGR +H+L+ +PFL ++ GTVGLGG++ +RAY+K+K
Sbjct: 8  GGRGEDSTSATYSRVVRTGMPRAHGGRSNHILIRIPFLFIILGTVGLGGLNASRAYKKQK 67

Query: 66 EAYPSHNPFLP 76
          E YPSHNPFLP
Sbjct: 68 ETYPSHNPFLP 78
[Close]
BLAST of Spo17571.1 vs. UniProtKB/TrEMBL
Match: A0A0D2PZ68_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G147500 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.500e-18
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 1 

		  

Query: 10 GSSSSVTYTRVVRTGVPRVHGGRHHL-LVGLPFLLVLFGTVGLGGISVTRAYRKEKEAYP 69
          GS    TY+ VVRTGVP+ HGGR +  L+ +PFLL++ GTVGLGG++ TRAYRK+KEAYP
Sbjct: 12 GSGRGATYSHVVRTGVPKAHGGRRNRGLIQIPFLLIVLGTVGLGGLNATRAYRKQKEAYP 71

Query: 70 SHNPFLP 76
          SHNPFLP
Sbjct: 72 SHNPFLP 78
[Close]
BLAST of Spo17571.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PYU6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11156 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.000e-18
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 1 

		  

Query: 6  GGPRGSSSSVTYTRVVRTGVPRVHGGRHHL-LVGLPFLLVLFGTVGLGGISVTRAYRKEK 65
          G  R  S S TY+RVVRTGVP+ HGGR +  L+ +PFLL++ GTVGLGG++ TRAYRK+K
Sbjct: 12 GSGREGSYSATYSRVVRTGVPKAHGGRRNRGLIQIPFLLIVLGTVGLGGLNATRAYRKQK 71

Query: 66 EAYPSHNPFLP 76
          EA PSHNPFLP
Sbjct: 72 EACPSHNPFLP 82
[Close]
BLAST of Spo17571.1 vs. TAIR (Arabidopsis)
Match: AT3G62190.1 (Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 4.100e-15
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 

		  

Query: 17  YTRVVRTGVPRVHGGR---HHLLVGLPFLLVLFGTVGLGGISVTRAYRKEKEAYPSHNPF 76
           Y+RVV+TGVPR +      +  L+G PFLL++ GT+GLGGI   RAY  +K+ +PSHNPF
Sbjct: 77  YSRVVKTGVPRPYSSAKRGNRWLIGAPFLLIVLGTIGLGGIKANRAYNLQKQTFPSHNPF 136
The following BLAST results are available for this feature:
BLAST of Spo17571.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902223804|gb|KNA19577.1|3.4e-35100.hypothetical protein SOVF_0597... [more]
gi|902223805|gb|KNA19578.1|1.4e-3398.6hypothetical protein SOVF_0597... [more]
gi|731336904|ref|XP_010679507.1|1.3e-2177.6PREDICTED: uncharacterized pro... [more]
gi|823124431|ref|XP_012480121.1|1.2e-1967.6PREDICTED: uncharacterized pro... [more]
gi|223545678|gb|EEF47182.1|2.6e-1963.3conserved hypothetical protein... [more]
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BLAST of Spo17571.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RL55_SPIOL2.4e-35100.Uncharacterized protein OS=Spi... [more]
A0A0K9RJB7_SPIOL9.9e-3498.6Uncharacterized protein OS=Spi... [more]
B9RN59_RICCO1.8e-1963.3Putative uncharacterized prote... [more]
A0A0D2PZ68_GOSRA1.5e-1867.1Uncharacterized protein OS=Gos... [more]
A0A0B0PYU6_GOSAR2.0e-1866.2Uncharacterized protein OS=Gos... [more]
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BLAST of Spo17571.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo17571.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G62190.14.1e-1554.8Chaperone DnaJ-domain superfam... [more]
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