Spo02353.1 (mRNA) | SpinachBase

Overview


Name	Spo02353.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Serine/arginine-rich splicing factor 4
Location	chr5 : 3357530 .. 3361554 (+)
Sequence length	1881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTATTTGTTGTGGATGATTTTTTCCTTCTAATTAATGGATTTTCACCTTTTCTATATGAATTTCACCTATAGCTGTTTTGAAAGTGAGATGATGTGCGGGTCTTTAAATTGCACGAACATTTGAAAACAATTCGCTTTGAATGATCAAGAAATCGTGCTTTTGTCTGTTTAGGAAGGAGTTGATCAGTAGTTAAATCAAGTGCTAGCCTTTTATGTTGTGTGCGCACAAATATGGAATTTGTGTGGAAGTTTATGGGGGTTATGCATGAATTCCTAAGGTGAGTAAATTATTGGCATATGAATGAGTTTGTTGACTTATTGTATCTTCAATTATGTAGGAAAAATGCCTCGCTATGGTGACCGAGGTGACCGGGGTGACCGGGGTGACCGTGACCGAGGTGATCGTGACCGTCACGGTAGTGGTACTCGTCTCTATGTTGGCCGCTTATCTTCGCGTACCAGGACTCATGACTTGGATGATCTTTTCAGCAGATATGGAAGGTAACGTACTTTCAGGTTACTATTGTTTTAAAGATGGCAATTTTTTTGTCTTGAATCTTCTGCATCTTGGTGCTTCATTGTGAAGATGGTTTTTGTTGTATATGTAAAAACCATTGTATAATATGGCATCGAAAGTTTCAGTACTGGCTCTTTATACTGCTAAAGAAATAAAAGAAGTTGCCCTATTAAAAATAATTCTTTGGTTAAGTTTCTCTTGTCAGTGGTGTCTGCTGCTTTTTAATCGATGTGAATGAGGGGAATTTCCTCCTTGTGACTTGTGCTACGGCAAGTCGAGGGGACTCTTGAAAAGGTTCCTTAATCTTTATTGATTTGTATTTGTTCTTAATGAAAGTATTTGTTCGAGGTGTTGCAACCTGCATGTGTCGTGTGGCTTAACTAAAATGTCTTGTTGAAGGTTTCTAGGCTTTTGCCTAGCCTTGGAGGTCTATGGTGGGATGGTTGCCCTTGATGGAATTGGTGGCTATTCTTGCAATGTATAGGGGACTTTGGCGATTCTTTCTATAATTTAATGCGTGTTTTTATGGAATTGGCAACATTCTCAAAGTGGTGTTTAGTTGATCTGTGAAGGGCGAGGTATCAACCCTTCGGTAGTTTTGTCCTGATGGCCTTACTGTTTATGGAAACCGTTTACGCAGAGTACGTGACGTGGATATGAAGCGCGATTATGCCTTTGTTGTATGTATCTCCTCTCTTACACTCCACTTTCTCTTTAACCATCTGCAGATCTGCTGCTCACAGCAGCGTACTATGATGAGTTGTGCTCTTTTGTTAATCATATATGAGCCTTTTGTTGTTGTTTTTGTTGCATTTTGATAACAGGAGTATAGTGATCCTCGTGATGCTGAAGATGCAAGATATAGCTTAAATGGGCGAGATGTGGATGGTACTAGAATCATCGTTGAGTTCGCAAAAGGGGTATGTTGCAGTGGATTTTCTGCTGCTTTGTGTTTGAAAATGTGTTATGTAGAAGATTCTTGTTAATATCAATTGTTCCTTTTTCTTAAGCATAAAAAAAATTGAACTGAGTTTCTGGCAGTCAAGTGAGTCAACATTACCTAATTTGTATCATTAAGGTCTTATGATTTCAGCGTCTTGGTTTCTACTCTGATAATTTATATGTGGTTGTTACTTCATTTTTCTTGTTATTGTCATTTTTTACCTTACAACAGCAAGTTTTTTTGCATTCACCATACTGGTTGTGGAGACAGCTGTTAAAAGTTAAATAAGCTAATTTACTACTCCCTCTGACCCTTTTTGATTGCCCTATACACCAAAGTTCACTTTATTAACACTTGGGCTCCTTTTTGATTGCCCTATACACACCAAAGTTCACTTTATTAAGGACAAGGAAAATTACATATGGGTTGATATTTGTCCTTGAAATCTTTACCATATAAGCTATGGGAAAACTCAAAAACAAAAAGGGAAGGTACCAAATTGTAGGTTAGGATGAAGCAGCTGTTACTCGATAGTTGATTGATTGCATGATTCTGGCTCATTATAGATGCTCATCACCTATTTTTCGCATTACTTATATTCAAATGTACCTTACTAATTGTAATTACATGTTATTGATGTGCTGAGTTTGTTGTGTTGGTCATTCAGGGACCACGAGGTCCAGGTGGTTCACGTGAGTCACGGGAGTCACGTGACTTCGGAGGGAGGGGACCAACCCCTGGATCCGGGAGATGCTTTAATTGTGGAATTGATGGGCACTGGGCTCGAGATTGCAAAGCAGGTGACTGGAAGAACAAGTGTTACCGTTGTGGAGAGCGAGGCCATATAGAAAGGAATTGTCAAAACAGCCCCAAAAAACTAAGGTCTTAATTTGATATTTTCCCTCTATAGTTTATGTTATTACATTTATGTTGTGAGTTTCTCTAAAGCTGCCTCCTGCTTTTTTCCCCTCACAAAACCTCTTGGGATTTTACCATCAGTTTGCCACTATGCATCAACACTACTTGCGGAAATGTTTAAGAGATATAAAAGAATCTCACCCTTACCATGCTGGTTGTGATTTGAAATACATCTCTTACTCTTGACCTATAAAGAGCTTGTTTTGGCGATTATTTAGTGCATGCCCTCTGCCTCTCACCCCCACCCAGAATCCGAGAGAAATAGAAATTGTAGACTAACCAGTGTTATCTAATATGCTCGTTTCTCTTCGTACAGCTTACTGAGTACACGCGTATTATGTATTAGTATTATGGAACTGAAGTGTATAATTAAGTAGCGAATTGCGTGTTCGTACTCATAGCATGTACTGAAGTGTACTGCGTATGGTAACACTGAGACTAACAATAATAATCACATCTTTGAAAGAGTAAAAACTTTTGAGGTGGTTTGCTTTGATAAGTATATGTTTGTTTGTAGCTGAGTGAATCATGTTTGATTTCTTTTAGCAGACGTGGCCGGAGCTACTCACGGTCACCGTCACCGCGCCGGCGTTCAGCATCTCCTCGCCGAGGAAGAAGTCGTAGCCGTAGTTTTAGTAGGAGCAGGAGCTACAGGTGCGACATTCATTCGTAGCATATTTCTTGCTATTGCAATTTTATTATGTTGTGCGCATTAGTTTAATCTGGGCTGGAAATGGTAGGAAGGGTTTTTCTTTTTGGCTCAGGCATTATATATTATATATTATTAGGGTAAATGTTTCGAATACATTAAAACTAAATGGTTGTTAATTTTCCTCTCCTGTTTCACAGTCAGTCTAGGTCTCCACCAAAAAAAGAGAGAGAAGTCGAGCGCACGGACAAGTCAATGAGCCCTCGTCCAAGCAGGAGCCCTAAGCGACAGAAAGGGTCACCTGTGACATCAAGGGGCAGGAAACGTTCTCCAACACCTGATGAGAGGAGTCCAGAAGGCAGAGGTAGATCCTCAGAGAGACGAGCAAATGGATCTGATTATGGTGGTAGCCCAAGGTCAAGGAGTAGAAGCCCCATCAAAGAAGACAGCCCGAGGAATGGAGATGCTCGAAGTCGAAGTCGAAGCCCCTTTGAAGAGAACGGACGAGATCATAGTGTCAGCCCAGTTGCTAGAAATGACCAGAATGGTAGGGAGGATGATAACGACAACGGCGACTATGAAGCTTCTCCTAGAGGTAGTGAATGATTGGAAACACTAGTTTCTTTTTTAAACCTTGTGTTGACAACTTGAGCTGTGTTAAACTGCAAGAATGTCACTTTTCCCCTTTAATTTTGAAACTCTGCTGTGTTATTTACATAATAGTAATTTTCTGTATTTTCTCAATTTTTTGTGATCTTGATAGTTATTAGATTTTTGCATATGGTTACGAAATTACATAAAACCCAACATTCGGTTGCACCTTAGTTTGCCTCGTAGCTCCCATAGTTATGCCACTCCTTGGTCGTAGATTAGTAAACACACGAGCAATCCATCGTTACTTTCGTTCACTTGACACGTCTCGAGCCTTACTTTCCTCATTATACTTTGTTGTTTTAACTTTAATCTACAAAACGATACCGTCTTATACATAAGACC

mRNA sequence

AATTATTTGTTGTGGATGATTTTTTCCTTCTAATTAATGGATTTTCACCTTTTCTATATGAATTTCACCTATAGCTGTTTTGAAAGTGAGATGATGTGCGGGTCTTTAAATTGCACGAACATTTGAAAACAATTCGCTTTGAATGATCAAGAAATCGTGCTTTTGTCTGTTTAGGAAGGAGTTGATCAGTAGTTAAATCAAGTGCTAGCCTTTTATGTTGTGTGCGCACAAATATGGAATTTGTGTGGAAGTTTATGGGGGTTATGCATGAATTCCTAAGGTGAGTAAATTATTGGCATATGAATGAGTTTGTTGACTTATTGTATCTTCAATTATGTAGGAAAAATGCCTCGCTATGGTGACCGAGGTGACCGGGGTGACCGGGGTGACCGTGACCGAGGTGATCGTGACCGTCACGGTAGTGGTACTCGTCTCTATGTTGGCCGCTTATCTTCGCGTACCAGGACTCATGACTTGGATGATCTTTTCAGCAGATATGGAAGGTTTCTAGGCTTTTGCCTAGCCTTGGAGGTCTATGGTGGGATGGTTGCCCTTGATGGAATTGGTGGCTATTCTTGCAATTTTTGTCCTGATGGCCTTACTGTTTATGGAAACCGTTTACGCAGAGTACGTGACGTGGATATGAAGCGCGATTATGCCTTTGTTGAGTATAGTGATCCTCGTGATGCTGAAGATGCAAGATATAGCTTAAATGGGCGAGATGTGGATGGTACTAGAATCATCGTTGAGTTCGCAAAAGGGGGACCACGAGGTCCAGGTGGTTCACGTGAGTCACGGGAGTCACGTGACTTCGGAGGGAGGGGACCAACCCCTGGATCCGGGAGATGCTTTAATTGTGGAATTGATGGGCACTGGGCTCGAGATTGCAAAGCAGGTGACTGGAAGAACAAGTGTTACCGTTGTGGAGAGCGAGGCCATATAGAAAGGAATTGTCAAAACAGCCCCAAAAAACTAAGCAGACGTGGCCGGAGCTACTCACGGTCACCGTCACCGCGCCGGCGTTCAGCATCTCCTCGCCGAGGAAGAAGTCGTAGCCGTAGTTTTAGTAGGAGCAGGAGCTACAGTCAGTCTAGGTCTCCACCAAAAAAAGAGAGAGAAGTCGAGCGCACGGACAAGTCAATGAGCCCTCGTCCAAGCAGGAGCCCTAAGCGACAGAAAGGGTCACCTGTGACATCAAGGGGCAGGAAACGTTCTCCAACACCTGATGAGAGGAGTCCAGAAGGCAGAGGTAGATCCTCAGAGAGACGAGCAAATGGATCTGATTATGGTGGTAGCCCAAGGTCAAGGAGTAGAAGCCCCATCAAAGAAGACAGCCCGAGGAATGGAGATGCTCGAAGTCGAAGTCGAAGCCCCTTTGAAGAGAACGGACGAGATCATAGTGTCAGCCCAGTTGCTAGAAATGACCAGAATGGTAGGGAGGATGATAACGACAACGGCGACTATGAAGCTTCTCCTAGAGGTAGTGAATGATTGGAAACACTAGTTTCTTTTTTAAACCTTGTGTTGACAACTTGAGCTGTGTTAAACTGCAAGAATGTCACTTTTCCCCTTTAATTTTGAAACTCTGCTGTGTTATTTACATAATAGTAATTTTCTGTATTTTCTCAATTTTTTGTGATCTTGATAGTTATTAGATTTTTGCATATGGTTACGAAATTACATAAAACCCAACATTCGGTTGCACCTTAGTTTGCCTCGTAGCTCCCATAGTTATGCCACTCCTTGGTCGTAGATTAGTAAACACACGAGCAATCCATCGTTACTTTCGTTCACTTGACACGTCTCGAGCCTTACTTTCCTCATTATACTTTGTTGTTTTAACTTTAATCTACAAAACGATACCGTCTTATACATAAGACC

Coding sequence (CDS)

ATGAGTTTGTTGACTTATTGTATCTTCAATTATGTAGGAAAAATGCCTCGCTATGGTGACCGAGGTGACCGGGGTGACCGGGGTGACCGTGACCGAGGTGATCGTGACCGTCACGGTAGTGGTACTCGTCTCTATGTTGGCCGCTTATCTTCGCGTACCAGGACTCATGACTTGGATGATCTTTTCAGCAGATATGGAAGGTTTCTAGGCTTTTGCCTAGCCTTGGAGGTCTATGGTGGGATGGTTGCCCTTGATGGAATTGGTGGCTATTCTTGCAATTTTTGTCCTGATGGCCTTACTGTTTATGGAAACCGTTTACGCAGAGTACGTGACGTGGATATGAAGCGCGATTATGCCTTTGTTGAGTATAGTGATCCTCGTGATGCTGAAGATGCAAGATATAGCTTAAATGGGCGAGATGTGGATGGTACTAGAATCATCGTTGAGTTCGCAAAAGGGGGACCACGAGGTCCAGGTGGTTCACGTGAGTCACGGGAGTCACGTGACTTCGGAGGGAGGGGACCAACCCCTGGATCCGGGAGATGCTTTAATTGTGGAATTGATGGGCACTGGGCTCGAGATTGCAAAGCAGGTGACTGGAAGAACAAGTGTTACCGTTGTGGAGAGCGAGGCCATATAGAAAGGAATTGTCAAAACAGCCCCAAAAAACTAAGCAGACGTGGCCGGAGCTACTCACGGTCACCGTCACCGCGCCGGCGTTCAGCATCTCCTCGCCGAGGAAGAAGTCGTAGCCGTAGTTTTAGTAGGAGCAGGAGCTACAGTCAGTCTAGGTCTCCACCAAAAAAAGAGAGAGAAGTCGAGCGCACGGACAAGTCAATGAGCCCTCGTCCAAGCAGGAGCCCTAAGCGACAGAAAGGGTCACCTGTGACATCAAGGGGCAGGAAACGTTCTCCAACACCTGATGAGAGGAGTCCAGAAGGCAGAGGTAGATCCTCAGAGAGACGAGCAAATGGATCTGATTATGGTGGTAGCCCAAGGTCAAGGAGTAGAAGCCCCATCAAAGAAGACAGCCCGAGGAATGGAGATGCTCGAAGTCGAAGTCGAAGCCCCTTTGAAGAGAACGGACGAGATCATAGTGTCAGCCCAGTTGCTAGAAATGACCAGAATGGTAGGGAGGATGATAACGACAACGGCGACTATGAAGCTTCTCCTAGAGGTAGTGAATGA

Protein sequence

MSLLTYCIFNYVGKMPRYGDRGDRGDRGDRDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLALEVYGGMVALDGIGGYSCNFCPDGLTVYGNRLRRVRDVDMKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSRSRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo02353	Spo02353	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo02353.1	Spo02353.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02353.1.exon.1	Spo02353.1.exon.1	exon
Spo02353.1.exon.2	Spo02353.1.exon.2	exon
Spo02353.1.exon.3	Spo02353.1.exon.3	exon
Spo02353.1.exon.4	Spo02353.1.exon.4	exon
Spo02353.1.exon.5	Spo02353.1.exon.5	exon
Spo02353.1.exon.6	Spo02353.1.exon.6	exon
Spo02353.1.exon.7	Spo02353.1.exon.7	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02353.1.utr5p.1	Spo02353.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02353.1.CDS.1	Spo02353.1.CDS.1	CDS
Spo02353.1.CDS.2	Spo02353.1.CDS.2	CDS
Spo02353.1.CDS.3	Spo02353.1.CDS.3	CDS
Spo02353.1.CDS.4	Spo02353.1.CDS.4	CDS
Spo02353.1.CDS.5	Spo02353.1.CDS.5	CDS
Spo02353.1.CDS.6	Spo02353.1.CDS.6	CDS
Spo02353.1.CDS.7	Spo02353.1.CDS.7	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02353.1.utr3p.1	Spo02353.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo02353.1 vs. NCBI nr
Match: gi|902235700|gb|KNA24047.1| (hypothetical protein SOVF_019420 isoform C [Spinacia oleracea])

HSP 1 Score: 540.0 bits (1390), Expect = 3.400e-150
Identity = 309/381 (81.10%), Postives = 312/381 (81.89%), Query Frame = 1


		  
Query: 15  MPRYGDRGDRGDRGDRDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLA 74
           MPRYGDRG        DRGDR   G   R    R  S TR +                  
Sbjct: 1   MPRYGDRG--------DRGDR---GDRDRGDRDRHGSGTRLY------------------ 60

Query: 75  LEVYGGMVALDGIGGYSCNFCPDGLTVYGNRLRRVRDVDMKRDYAFVEYSDPRDAEDARY 134
                       +G  S       L    +R  RVRDVDMKRDYAFVEYSDPRDAEDARY
Sbjct: 61  ------------VGRLSSRTRTHDLDDLFSRYGRVRDVDMKRDYAFVEYSDPRDAEDARY 120

Query: 135 SLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARD 194
           SLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARD
Sbjct: 121 SLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARD 180

Query: 195 CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRRRSASPRRGRSRSRSF 254
           CKAGDWKNKCYRCGERGHIERNCQNSPKKL RRGRSYS SPSPRRRSASPRRGRSRSRSF
Sbjct: 181 CKAGDWKNKCYRCGERGHIERNCQNSPKKL-RRGRSYSLSPSPRRRSASPRRGRSRSRSF 240

Query: 255 SRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERSPEG 314
           SRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERSPEG
Sbjct: 241 SRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERSPEG 300

Query: 315 RGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSRSRSPFEENGRDHSVSPVARND 374
           RGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSRSRSPFEENGRDHSVSPVARND
Sbjct: 301 RGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSRSRSPFEENGRDHSVSPVARND 339

Query: 375 QNGREDDNDNGDYEASPRGSE 396
           QNGREDDNDNGDYEASPRGSE
Sbjct: 361 QNGREDDNDNGDYEASPRGSE 339

[Close]

BLAST of Spo02353.1 vs. NCBI nr
Match: gi|902235698|gb|KNA24045.1| (hypothetical protein SOVF_019420 isoform A [Spinacia oleracea])

HSP 1 Score: 531.2 bits (1367), Expect = 1.600e-147
Identity = 281/282 (99.65%), Postives = 281/282 (99.65%), Query Frame = 1


		  
Query: 114 MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR 173
           MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR
Sbjct: 1   MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR 60

Query: 174 GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSR 233
           GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYS 
Sbjct: 61  GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSL 120

Query: 234 SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG 293
           SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG
Sbjct: 121 SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG 180

Query: 294 SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR 353
           SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR
Sbjct: 181 SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR 240

Query: 354 SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE 396
           SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE
Sbjct: 241 SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE 282

[Close]

BLAST of Spo02353.1 vs. NCBI nr
Match: gi|902235699|gb|KNA24046.1| (hypothetical protein SOVF_019420 isoform B [Spinacia oleracea])

HSP 1 Score: 525.4 bits (1352), Expect = 8.600e-146
Identity = 280/282 (99.29%), Postives = 280/282 (99.29%), Query Frame = 1


		  
Query: 114 MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR 173
           MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR
Sbjct: 1   MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR 60

Query: 174 GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSR 233
           GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL RRGRSYS 
Sbjct: 61  GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL-RRGRSYSL 120

Query: 234 SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG 293
           SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG
Sbjct: 121 SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG 180

Query: 294 SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR 353
           SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR
Sbjct: 181 SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR 240

Query: 354 SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE 396
           SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE
Sbjct: 241 SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE 281

[Close]

BLAST of Spo02353.1 vs. NCBI nr
Match: gi|731318471|ref|XP_010669744.1| (PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 448.7 bits (1153), Expect = 1.000e-122
Identity = 275/389 (70.69%), Postives = 293/389 (75.32%), Query Frame = 1


		  
Query: 15  MPRYGDRGDRGDRGDRDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLA 74
           MPRYGDRGDR   GDR          G R    R  S TR +                  
Sbjct: 1   MPRYGDRGDR---GDR----------GDR--GDRHGSGTRLY------------------ 60

Query: 75  LEVYGGMVALDGIGGYSCNFCPDGLTVYGNRLRRVRDVDMKRDYAFVEYSDPRDAEDARY 134
                       +G  S       L    +R  RVRDVDMKRDYAFVEYSDPRDAEDARY
Sbjct: 61  ------------VGRLSSRTRTHDLDDLFSRYGRVRDVDMKRDYAFVEYSDPRDAEDARY 120

Query: 135 SLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARD 194
           SLNGRDVDGTRIIVEFAKGGPRGPGGSR      D+GGRGP PGSGRCFNCGIDGHWARD
Sbjct: 121 SLNGRDVDGTRIIVEFAKGGPRGPGGSR------DYGGRGPPPGSGRCFNCGIDGHWARD 180

Query: 195 CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRRRSASPRRGRSRSRSF 254
           CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPR+RSASPRRGRSRSRSF
Sbjct: 181 CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRKRSASPRRGRSRSRSF 240

Query: 255 SRSRSYSQSRSPPKKEREVERTDKSMSPR--PSRSPKRQKGSPVTSRGRKRSPTPDERSP 314
           SRSRSYSQSRSPPK+ER+VERT++S SPR   SRSPKRQK SP++SR RKRSP+ DERSP
Sbjct: 241 SRSRSYSQSRSPPKRERDVERTERSRSPRRSRSRSPKRQKASPLSSRSRKRSPSADERSP 300

Query: 315 EGRGRSS---ERRANGSDYGGSPRSRSRSPIKE---DSPRNGDARSRSRSPFEENGRDHS 374
           EGR   S   ER+ANGSDYGGSPRSRSRSP+KE   DSP NGDA  RS+SPFEENGRD S
Sbjct: 301 EGRDSPSDGDERQANGSDYGGSPRSRSRSPVKEIERDSPMNGDA--RSQSPFEENGRDRS 334

Query: 375 VSPVARNDQNGREDDNDNGDYEASPRGSE 396
           VSPVAR+D+NGRED+ND  DYEASPRGSE
Sbjct: 361 VSPVARSDKNGREDEND--DYEASPRGSE 334

[Close]

BLAST of Spo02353.1 vs. NCBI nr
Match: gi|731318473|ref|XP_010669745.1| (PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 442.6 bits (1137), Expect = 7.300e-121
Identity = 274/389 (70.44%), Postives = 292/389 (75.06%), Query Frame = 1


		  
Query: 15  MPRYGDRGDRGDRGDRDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLA 74
           MPRYGDRGDR   GDR          G R    R  S TR +                  
Sbjct: 1   MPRYGDRGDR---GDR----------GDR--GDRHGSGTRLY------------------ 60

Query: 75  LEVYGGMVALDGIGGYSCNFCPDGLTVYGNRLRRVRDVDMKRDYAFVEYSDPRDAEDARY 134
                       +G  S       L    +R  RVRDVDMKRDYAFVEYSDPRDAEDARY
Sbjct: 61  ------------VGRLSSRTRTHDLDDLFSRYGRVRDVDMKRDYAFVEYSDPRDAEDARY 120

Query: 135 SLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARD 194
           SLNGRDVDGTRIIVEFAKGGPRGPGGSR      D+GGRGP PGSGRCFNCGIDGHWARD
Sbjct: 121 SLNGRDVDGTRIIVEFAKGGPRGPGGSR------DYGGRGPPPGSGRCFNCGIDGHWARD 180

Query: 195 CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRRRSASPRRGRSRSRSF 254
           CKAGDWKNKCYRCGERGHIERNCQNSPKKL RRGRSYSRSPSPR+RSASPRRGRSRSRSF
Sbjct: 181 CKAGDWKNKCYRCGERGHIERNCQNSPKKL-RRGRSYSRSPSPRKRSASPRRGRSRSRSF 240

Query: 255 SRSRSYSQSRSPPKKEREVERTDKSMSPR--PSRSPKRQKGSPVTSRGRKRSPTPDERSP 314
           SRSRSYSQSRSPPK+ER+VERT++S SPR   SRSPKRQK SP++SR RKRSP+ DERSP
Sbjct: 241 SRSRSYSQSRSPPKRERDVERTERSRSPRRSRSRSPKRQKASPLSSRSRKRSPSADERSP 300

Query: 315 EGRGRSS---ERRANGSDYGGSPRSRSRSPIKE---DSPRNGDARSRSRSPFEENGRDHS 374
           EGR   S   ER+ANGSDYGGSPRSRSRSP+KE   DSP NGDA  RS+SPFEENGRD S
Sbjct: 301 EGRDSPSDGDERQANGSDYGGSPRSRSRSPVKEIERDSPMNGDA--RSQSPFEENGRDRS 333

Query: 375 VSPVARNDQNGREDDNDNGDYEASPRGSE 396
           VSPVAR+D+NGRED+ND  DYEASPRGSE
Sbjct: 361 VSPVARSDKNGREDEND--DYEASPRGSE 333

[Close]

BLAST of Spo02353.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYU2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_019420 PE=4 SV=1)

HSP 1 Score: 540.0 bits (1390), Expect = 2.300e-150
Identity = 309/381 (81.10%), Postives = 312/381 (81.89%), Query Frame = 1


		  
Query: 15  MPRYGDRGDRGDRGDRDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLA 74
           MPRYGDRG        DRGDR   G   R    R  S TR +                  
Sbjct: 1   MPRYGDRG--------DRGDR---GDRDRGDRDRHGSGTRLY------------------ 60

Query: 75  LEVYGGMVALDGIGGYSCNFCPDGLTVYGNRLRRVRDVDMKRDYAFVEYSDPRDAEDARY 134
                       +G  S       L    +R  RVRDVDMKRDYAFVEYSDPRDAEDARY
Sbjct: 61  ------------VGRLSSRTRTHDLDDLFSRYGRVRDVDMKRDYAFVEYSDPRDAEDARY 120

Query: 135 SLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARD 194
           SLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARD
Sbjct: 121 SLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARD 180

Query: 195 CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRRRSASPRRGRSRSRSF 254
           CKAGDWKNKCYRCGERGHIERNCQNSPKKL RRGRSYS SPSPRRRSASPRRGRSRSRSF
Sbjct: 181 CKAGDWKNKCYRCGERGHIERNCQNSPKKL-RRGRSYSLSPSPRRRSASPRRGRSRSRSF 240

Query: 255 SRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERSPEG 314
           SRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERSPEG
Sbjct: 241 SRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTPDERSPEG 300

Query: 315 RGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSRSRSPFEENGRDHSVSPVARND 374
           RGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSRSRSPFEENGRDHSVSPVARND
Sbjct: 301 RGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSRSRSPFEENGRDHSVSPVARND 339

Query: 375 QNGREDDNDNGDYEASPRGSE 396
           QNGREDDNDNGDYEASPRGSE
Sbjct: 361 QNGREDDNDNGDYEASPRGSE 339

[Close]

BLAST of Spo02353.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWY4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_019420 PE=4 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 1.100e-147
Identity = 281/282 (99.65%), Postives = 281/282 (99.65%), Query Frame = 1


		  
Query: 114 MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR 173
           MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR
Sbjct: 1   MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR 60

Query: 174 GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSR 233
           GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYS 
Sbjct: 61  GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSL 120

Query: 234 SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG 293
           SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG
Sbjct: 121 SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG 180

Query: 294 SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR 353
           SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR
Sbjct: 181 SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR 240

Query: 354 SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE 396
           SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE
Sbjct: 241 SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE 282

[Close]

BLAST of Spo02353.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RX12_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_019420 PE=4 SV=1)

HSP 1 Score: 525.4 bits (1352), Expect = 6.000e-146
Identity = 280/282 (99.29%), Postives = 280/282 (99.29%), Query Frame = 1


		  
Query: 114 MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR 173
           MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR
Sbjct: 1   MKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGR 60

Query: 174 GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSR 233
           GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL RRGRSYS 
Sbjct: 61  GPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL-RRGRSYSL 120

Query: 234 SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG 293
           SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG
Sbjct: 121 SPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKG 180

Query: 294 SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR 353
           SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR
Sbjct: 181 SPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKEDSPRNGDARSR 240

Query: 354 SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE 396
           SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE
Sbjct: 241 SRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE 281

[Close]

BLAST of Spo02353.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZP6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g036730 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 7.100e-123
Identity = 275/389 (70.69%), Postives = 293/389 (75.32%), Query Frame = 1


		  
Query: 15  MPRYGDRGDRGDRGDRDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLA 74
           MPRYGDRGDR   GDR          G R    R  S TR +                  
Sbjct: 1   MPRYGDRGDR---GDR----------GDR--GDRHGSGTRLY------------------ 60

Query: 75  LEVYGGMVALDGIGGYSCNFCPDGLTVYGNRLRRVRDVDMKRDYAFVEYSDPRDAEDARY 134
                       +G  S       L    +R  RVRDVDMKRDYAFVEYSDPRDAEDARY
Sbjct: 61  ------------VGRLSSRTRTHDLDDLFSRYGRVRDVDMKRDYAFVEYSDPRDAEDARY 120

Query: 135 SLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARD 194
           SLNGRDVDGTRIIVEFAKGGPRGPGGSR      D+GGRGP PGSGRCFNCGIDGHWARD
Sbjct: 121 SLNGRDVDGTRIIVEFAKGGPRGPGGSR------DYGGRGPPPGSGRCFNCGIDGHWARD 180

Query: 195 CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRRRSASPRRGRSRSRSF 254
           CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPR+RSASPRRGRSRSRSF
Sbjct: 181 CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRKRSASPRRGRSRSRSF 240

Query: 255 SRSRSYSQSRSPPKKEREVERTDKSMSPR--PSRSPKRQKGSPVTSRGRKRSPTPDERSP 314
           SRSRSYSQSRSPPK+ER+VERT++S SPR   SRSPKRQK SP++SR RKRSP+ DERSP
Sbjct: 241 SRSRSYSQSRSPPKRERDVERTERSRSPRRSRSRSPKRQKASPLSSRSRKRSPSADERSP 300

Query: 315 EGRGRSS---ERRANGSDYGGSPRSRSRSPIKE---DSPRNGDARSRSRSPFEENGRDHS 374
           EGR   S   ER+ANGSDYGGSPRSRSRSP+KE   DSP NGDA  RS+SPFEENGRD S
Sbjct: 301 EGRDSPSDGDERQANGSDYGGSPRSRSRSPVKEIERDSPMNGDA--RSQSPFEENGRDRS 334

Query: 375 VSPVARNDQNGREDDNDNGDYEASPRGSE 396
           VSPVAR+D+NGRED+ND  DYEASPRGSE
Sbjct: 361 VSPVARSDKNGREDEND--DYEASPRGSE 334

[Close]

BLAST of Spo02353.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJL2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_178190 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 3.200e-99
Identity = 221/312 (70.83%), Postives = 225/312 (72.12%), Query Frame = 1


		  
Query: 15  MPRYGDRGDRGDRGDRDRGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLA 74
           MPRYGDRGD        RGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLA
Sbjct: 1   MPRYGDRGD--------RGDRDRHGSGTRLYVGRLSSRTRTHDLDDLFSRYGRFLGFCLA 60

Query: 75  LEVYGGMVALDGIGGYSCNFCPDGLTVYGNRLRRVRDVDMKRDYAFVEYSDPRDAEDARY 134
           LEVYGGMVAL GIGG S N                      +D  +V    PR    +R 
Sbjct: 61  LEVYGGMVAL-GIGGQSRN----------------------QDTIYV---GPRGPGGSRE 120

Query: 135 SLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGRCFNCGIDGHWARD 194
           S   RD  G                              GPTPGSGRCFNCGIDGHWARD
Sbjct: 121 SRESRDFGGR-----------------------------GPTPGSGRCFNCGIDGHWARD 180

Query: 195 CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRRRSASPRRGRSRSRSF 254
           CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYS SPSPRRRSASPRRGRSRSRSF
Sbjct: 181 CKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSLSPSPRRRSASPRRGRSRSRSF 240

Query: 255 SRSRSYS-------QSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTP 314
           SRSRSYS       +SRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTP
Sbjct: 241 SRSRSYSFPLLFHIRSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGRKRSPTP 249

Query: 315 DERSPEGRGRSS 320
           DERSPEGRGRSS
Sbjct: 301 DERSPEGRGRSS 249

[Close]

BLAST of Spo02353.1 vs. ExPASy Swiss-Prot
Match: RSZ33_ARATH (Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana GN=RS2Z33 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.200e-60
Identity = 161/297 (54.21%), Postives = 187/297 (62.96%), Query Frame = 1


		  
Query: 104 NRLRRVRDVDMKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRE 163
           +R  RVRDVDMKRDYAFVE+ DPRDA+DAR+ L+GRD DG+RI VEF++G PRG      
Sbjct: 32  SRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRG------ 91

Query: 164 SRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 223
              SRDF  RGP PG+GRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIERNC+NSPKK
Sbjct: 92  ---SRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKK 151

Query: 224 LSRRGRSYSRSPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPR 283
           L R G SYSRSP    RS SPRR RS SRS SRSRSYS+SRSP      V R ++S+  R
Sbjct: 152 LRRSG-SYSRSPV---RSRSPRRRRSPSRSLSRSRSYSRSRSP------VRRRERSVEER 211

Query: 284 PSRSPKRQKGSPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKED 343
            SRSPKR   S ++ R R RSP  D+                    GSP+    SP    
Sbjct: 212 -SRSPKRMDDS-LSPRARDRSPVLDDE-------------------GSPKIIDGSPPPSP 271

Query: 344 SPRNGDARSRSRSPFEENGRDHSVSPV--ARNDQNGREDDNDNGDYE---ASPRGSE 396
             +      R     ++NGR+  VSPV  A  D +  +    + DYE    SPRGSE
Sbjct: 272 KLQKEVGSDRDGGSPQDNGRNSVVSPVVGAGGDSSKEDRSPVDDDYEPNRTSPRGSE 288

[Close]

BLAST of Spo02353.1 vs. ExPASy Swiss-Prot
Match: RSZ32_ARATH (Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.700e-59
Identity = 162/295 (54.92%), Postives = 196/295 (66.44%), Query Frame = 1


		  
Query: 104 NRLRRVRDVDMKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRE 163
           +R  RVRDVDMKRDYAFVE+SDPRDA+DARY L+GRD DG+RI VE ++G PRG      
Sbjct: 32  SRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRG------ 91

Query: 164 SRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK- 223
              SRD G RGP PGSGRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIERNC+NSP  
Sbjct: 92  ---SRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSP 151

Query: 224 KLSRRGRSYSRSPSPRRRSASPRRGRS--RSRSFSRSRSYSQSRSPPKKEREVERTDKSM 283
           K +R+G SYSRSP    +S SPRR RS  RSRS+SR RSYS+SRSP ++E+ VE  D+  
Sbjct: 152 KKARQGGSYSRSPV---KSRSPRRRRSPSRSRSYSRGRSYSRSRSPVRREKSVE--DR-- 211

Query: 284 SPRPSRSPKRQKGSPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPI 343
               SRSPK  + S V+ +GR +S +PD +  +    +S +R  GSDY GSP+       
Sbjct: 212 ----SRSPKAMERS-VSPKGRDQSLSPDRKVID----ASPKR--GSDYDGSPK------- 271

Query: 344 KEDSPRNGDARSRSRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE 396
                 NG+ R+ S SP    G     SPV  N Q+    D++      SP+GSE
Sbjct: 272 -----ENGNGRN-SASPIVGGGE----SPVGLNGQDRSPIDDEAELSRPSPKGSE 282

[Close]

BLAST of Spo02353.1 vs. ExPASy Swiss-Prot
Match: SRSF7_BOVIN (Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.600e-13
Identity = 99/259 (38.22%), Postives = 120/259 (46.33%), Query Frame = 1


		  
Query: 63  SRYGRFLGFCLALEVYGGMVALD-GIGGYSCNFCPDGLTVYGNRLRRVRDVDMKRDYAFV 122
           SRYGR+ G     +VY G +    G G     F       Y   LR V        +AFV
Sbjct: 2   SRYGRYGG---ETKVYVGNLGTGAGKGELERAFS------YYGPLRTVWIARNPPGFAFV 61

Query: 123 EYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGR 182
           E+ DPRDAEDA   L+G+ + G+R+ VE + G PR       SR  R    R P   + R
Sbjct: 62  EFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR------RSRFDRP-PARRPFDPNDR 121

Query: 183 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRRRS 242
           C+ CG  GH+A DC     + +  R   R H       S  +  R  RS SRS   R RS
Sbjct: 122 CYECGEKGHYAYDCHRYSRRRRS-RSRSRSH-------SRSRGRRYSRSRSRSRGRRSRS 181

Query: 243 ASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVTSRGR 302
           ASPRR RS S   SRS S  +SRS   K         S S   SRS  R    P +SR +
Sbjct: 182 ASPRRSRSVSLRRSRSASLRRSRSGSIK--------GSRSRSRSRSRSRSLSRPRSSRSK 228

Query: 303 KRSPTPD-ERSPEGRGRSS 320
            RSP+P   RSP G  R S
Sbjct: 242 SRSPSPKRSRSPSGSPRRS 228

[Close]

BLAST of Spo02353.1 vs. ExPASy Swiss-Prot
Match: SRSF7_MOUSE (Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.200e-11
Identity = 83/208 (39.90%), Postives = 103/208 (49.52%), Query Frame = 1


		  
Query: 118 YAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTP 177
           +AFVE+ DPRDAEDA   L+G+ + G+R+ VE + G P      R SR  R    R P  
Sbjct: 78  FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP------RRSRFDRP-PARRPFD 137

Query: 178 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSP 237
            + RC+ CG  GH+A DC     + +  R   R H       S  +  R  RS SRS   
Sbjct: 138 PNDRCYECGEKGHYAYDCHRYSRRRRS-RSRSRSH-------SRSRGRRYSRSRSRSRGR 197

Query: 238 RRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPRPSRSPKRQKGSPVT 297
           R RSASPRR RS S   SRS S  +SRS       +  +    S   SRS  R    P +
Sbjct: 198 RSRSASPRRSRSVSLRRSRSASLRRSRS-----GSIIGSRYFQSRSRSRSRSRSISRPRS 257

Query: 298 SRGRKRSPTPD-ERSPEG---RGRSSER 322
           SR + RSP+P   RSP G   R  S ER
Sbjct: 258 SRSKSRSPSPKRSRSPSGSPHRSASPER 265

[Close]

BLAST of Spo02353.1 vs. ExPASy Swiss-Prot
Match: SRSF7_HUMAN (Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.200e-9
Identity = 104/287 (36.24%), Postives = 130/287 (45.30%), Query Frame = 1


		  
Query: 63  SRYGRFLGFCLALEVYGGMVALD-GIGGYSCNFCPDGLTVYGNRLRRVRDVDMKRDYAFV 122
           SRYGR+ G     +VY G +    G G     F       Y   LR V        +AFV
Sbjct: 2   SRYGRYGG---ETKVYVGNLGTGAGKGELERAFS------YYGPLRTVWIARNPPGFAFV 61

Query: 123 EYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTPGSGR 182
           E+ DPRDAEDA   L+G+ + G+R+ VE + G PR       SR  R        P + R
Sbjct: 62  EFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR------RSRFDR--------PPARR 121

Query: 183 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSRSPSPRRRS 242
            F               D  ++CY CGE+GH   +C     + SRR RS SRS     RS
Sbjct: 122 PF---------------DPNDRCYECGEKGHYAYDCH----RYSRRRRSRSRS-----RS 181

Query: 243 ASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVE-RTDKSMSPRPSRS----PKRQKGSPV 302
            S  RGR  SRS SRSR      + P++ R +  R  +S S R SRS      R   SP 
Sbjct: 182 HSRSRGRRYSRSRSRSRGRRSRSASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPS 238

Query: 303 TSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKED 344
            SR R RS     RS   + RS   + + S   GSPR RS SP + D
Sbjct: 242 RSRSRSRS-ISRPRSSRSKSRSPSPKRSRSP-SGSPR-RSASPERMD 238

[Close]

BLAST of Spo02353.1 vs. TAIR (Arabidopsis)
Match: AT2G37340.1 (arginine/serine-rich zinc knuckle-containing protein 33)

HSP 1 Score: 233.8 bits (595), Expect = 1.800e-61
Identity = 161/297 (54.21%), Postives = 187/297 (62.96%), Query Frame = 1


		  
Query: 104 NRLRRVRDVDMKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRE 163
           +R  RVRDVDMKRDYAFVE+ DPRDA+DAR+ L+GRD DG+RI VEF++G PRG      
Sbjct: 32  SRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRG------ 91

Query: 164 SRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 223
              SRDF  RGP PG+GRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIERNC+NSPKK
Sbjct: 92  ---SRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKK 151

Query: 224 LSRRGRSYSRSPSPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREVERTDKSMSPR 283
           L R G SYSRSP    RS SPRR RS SRS SRSRSYS+SRSP      V R ++S+  R
Sbjct: 152 LRRSG-SYSRSPV---RSRSPRRRRSPSRSLSRSRSYSRSRSP------VRRRERSVEER 211

Query: 284 PSRSPKRQKGSPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPIKED 343
            SRSPKR   S ++ R R RSP  D+                    GSP+    SP    
Sbjct: 212 -SRSPKRMDDS-LSPRARDRSPVLDDE-------------------GSPKIIDGSPPPSP 271

Query: 344 SPRNGDARSRSRSPFEENGRDHSVSPV--ARNDQNGREDDNDNGDYE---ASPRGSE 396
             +      R     ++NGR+  VSPV  A  D +  +    + DYE    SPRGSE
Sbjct: 272 KLQKEVGSDRDGGSPQDNGRNSVVSPVVGAGGDSSKEDRSPVDDDYEPNRTSPRGSE 288

[Close]

BLAST of Spo02353.1 vs. TAIR (Arabidopsis)
Match: AT3G53500.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 230.7 bits (587), Expect = 1.500e-60
Identity = 162/295 (54.92%), Postives = 196/295 (66.44%), Query Frame = 1


		  
Query: 104 NRLRRVRDVDMKRDYAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRE 163
           +R  RVRDVDMKRDYAFVE+SDPRDA+DARY L+GRD DG+RI VE ++G PRG      
Sbjct: 32  SRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRG------ 91

Query: 164 SRESRDFGGRGPTPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK- 223
              SRD G RGP PGSGRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIERNC+NSP  
Sbjct: 92  ---SRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSP 151

Query: 224 KLSRRGRSYSRSPSPRRRSASPRRGRS--RSRSFSRSRSYSQSRSPPKKEREVERTDKSM 283
           K +R+G SYSRSP    +S SPRR RS  RSRS+SR RSYS+SRSP ++E+ VE  D+  
Sbjct: 152 KKARQGGSYSRSPV---KSRSPRRRRSPSRSRSYSRGRSYSRSRSPVRREKSVE--DR-- 211

Query: 284 SPRPSRSPKRQKGSPVTSRGRKRSPTPDERSPEGRGRSSERRANGSDYGGSPRSRSRSPI 343
               SRSPK  + S V+ +GR +S +PD +  +    +S +R  GSDY GSP+       
Sbjct: 212 ----SRSPKAMERS-VSPKGRDQSLSPDRKVID----ASPKR--GSDYDGSPK------- 271

Query: 344 KEDSPRNGDARSRSRSPFEENGRDHSVSPVARNDQNGREDDNDNGDYEASPRGSE 396
                 NG+ R+ S SP    G     SPV  N Q+    D++      SP+GSE
Sbjct: 272 -----ENGNGRN-SASPIVGGGE----SPVGLNGQDRSPIDDEAELSRPSPKGSE 282

[Close]

BLAST of Spo02353.1 vs. TAIR (Arabidopsis)
Match: AT4G31580.1 (serine/arginine-rich 22)

HSP 1 Score: 60.1 bits (144), Expect = 3.600e-9
Identity = 62/158 (39.24%), Postives = 83/158 (52.53%), Query Frame = 1


		  
Query: 118 YAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTP 177
           YAF+++ DPRDA DA  +L+G++  G R+     +G  RG GG R        GGRG   
Sbjct: 40  YAFLDFEDPRDARDAIRALDGKN--GWRVEQSHNRG-ERG-GGGRGGDRGGGGGGRGGRG 99

Query: 178 GSG-RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYSR-SP 237
           GS  +C+ CG  GH+AR+C+         R G      ++   +P +  RR  SY R S 
Sbjct: 100 GSDLKCYECGETGHFARECRN--------RGGTGRRRSKSRSRTPPRY-RRSPSYGRRSY 159

Query: 238 SPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREV 274
           SPR RS  P R RS S   +R RSYS+S  P +   EV
Sbjct: 160 SPRARSPPPPRRRSPSPPPARGRSYSRSPPPYRAREEV 184

[Close]

BLAST of Spo02353.1 vs. TAIR (Arabidopsis)
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 56.2 bits (134), Expect = 5.200e-8
Identity = 32/64 (50.00%), Postives = 37/64 (57.81%), Query Frame = 1


		  
Query: 118 YAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTP 177
           YAFVE+ D RDA+DA Y  +G D DG  + VE A GG R    +R S   R  GGRG   
Sbjct: 47  YAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGD 106

Query: 178 GSGR 182
           G GR
Sbjct: 107 GGGR 110

[Close]

BLAST of Spo02353.1 vs. TAIR (Arabidopsis)
Match: AT2G24590.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.500e-7
Identity = 55/158 (34.81%), Postives = 78/158 (49.37%), Query Frame = 1


		  
Query: 118 YAFVEYSDPRDAEDARYSLNGRDVDGTRIIVEFAKGGPRGPGGSRESRESRDFGGRGPTP 177
           YAF+++ D RDA DA   ++G++  G R+     +GG  G GG R   +    GGRG   
Sbjct: 40  YAFLDFEDSRDARDAIREVDGKN--GWRVEQSHNRGGGGGRGGGRGGGD----GGRGRGG 99

Query: 178 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLSRRGRSYS--RSP 237
              +C+ CG  GH+AR+C++        R G  G      ++      R+  +Y   RS 
Sbjct: 100 SDLKCYECGESGHFARECRS--------RGGSGGRRRSRSRSRSPPRYRKSPTYGGRRSY 159

Query: 238 SPRRRSASPRRGRSRSRSFSRSRSYSQSRSPPKKEREV 274
           SPR RS  P R RS S    R R+YS+S  P +   EV
Sbjct: 160 SPRARSPPPPRRRSPS---PRGRNYSRSPPPYRARDEV 180

The following BLAST results are available for this feature:

BLAST of Spo02353.1 vs. NCBI nr
BLAST of Spo02353.1 vs. UniProtKB/TrEMBL
BLAST of Spo02353.1 vs. ExPASy Swiss-Prot
BLAST of Spo02353.1 vs. TAIR (Arabidopsis)

BLAST of Spo02353.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902235700\|gb\|KNA24047.1\|	3.4e-150	81.1	hypothetical protein SOVF_0194...	[more]
gi\|902235698\|gb\|KNA24045.1\|	1.6e-147	99.6	hypothetical protein SOVF_0194...	[more]
gi\|902235699\|gb\|KNA24046.1\|	8.6e-146	99.2	hypothetical protein SOVF_0194...	[more]
gi\|731318471\|ref\|XP_010669744.1\|	1.0e-122	70.6	PREDICTED: serine/arginine-ric...	[more]
gi\|731318473\|ref\|XP_010669745.1\|	7.3e-121	70.4	PREDICTED: serine/arginine-ric...	[more]

BLAST of Spo02353.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RYU2_SPIOL	2.3e-150	81.1	Uncharacterized protein OS=Spi...	[more]
A0A0K9RWY4_SPIOL	1.1e-147	99.6	Uncharacterized protein OS=Spi...	[more]
A0A0K9RX12_SPIOL	6.0e-146	99.2	Uncharacterized protein OS=Spi...	[more]
A0A0J8CZP6_BETVU	7.1e-123	70.6	Uncharacterized protein OS=Bet...	[more]
A0A0K9QJL2_SPIOL	3.2e-99	70.8	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo02353.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RSZ33_ARATH	3.2e-60	54.2	Serine/arginine-rich splicing ...	[more]
RSZ32_ARATH	2.7e-59	54.9	Serine/arginine-rich splicing ...	[more]
SRSF7_BOVIN	8.6e-13	38.2	Serine/arginine-rich splicing ...	[more]
SRSF7_MOUSE	6.2e-11	39.9	Serine/arginine-rich splicing ...	[more]
SRSF7_HUMAN	1.2e-9	36.2	Serine/arginine-rich splicing ...	[more]

BLAST of Spo02353.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G37340.1	1.8e-61	54.2	arginine/serine-rich zinc knuc...	[more]
AT3G53500.2	1.5e-60	54.9	RNA-binding (RRM/RBD/RNP motif...	[more]
AT4G31580.1	3.6e-9	39.2	serine/arginine-rich 22	[more]
AT4G02430.2	5.2e-8	50.0	RNA-binding (RRM/RBD/RNP motif...	[more]
AT2G24590.1	1.5e-7	34.8	RNA recognition motif and CCHC...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 112..146 score: 2.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 43..149 score: 5.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 42..153 score: 1
IPR001878	Zinc finger, CCHC-type	GENE3D	4.10.60.10		coord: 181..219 score: 9.1
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 181..196 score: 2.8E-6coord: 202..218 score: 9.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 203..219 score: 0.001coord: 181..197 score: 2.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 203..219 score: 10.675coord: 181..196 score: 10
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 172..220 score: 2.82
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 30..65 score: 2.0E-20coord: 107..159 score: 2.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 114..178 score: 1.99E-18coord: 38..79 score: 1.99
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 218..285 score: 2.1E-20coord: 114..171 score: 2.1E-20coord: 15..80 score: 2.1E-20coord: 335..395 score: 2.1
None	No IPR available	PANTHER	PTHR23147:SF1	SUBFAMILY NOT NAMED	coord: 15..80 score: 2.1E-20coord: 218..285 score: 2.1E-20coord: 335..395 score: 2.1E-20coord: 114..171 score: 2.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding