Spo08403.1 (mRNA)

Overview
NameSpo08403.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionHAT family dimerisation domain containing protein, expressed
LocationSpoScf_01684 : 40129 .. 44218 (+)
Sequence length1119
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAATTTGTTATTAAAAAAAATAATTCTCAAGAAAATTGTAGTGGTACTTTTAATGGGGATCAGTTGACTGCAAACTTAGATCATGAAAATTATATTAGTGATCACGAGCCTAATGTTGTTCCTAATGTGTCTATTGATGTGCCAAATGTGTCGAATGATGTGCCAATTGAGCCTAATGAAGTGCCAATTGAGCACAATGAAAATCCCAATGTCGGTGAAGATGAAACTATCCCTGACATTTATGATCCTGCAAATTGGGATAATTTGGATCACAAGGAAAGAGACATCTTAGTTGAGAAAGGGCCTCCTGTAAGAGAACTTAATCTTAACTTCCCTTTAGATAATCTCAATAGGCATTTTTCGTGTTCTTTTTACTCTAAAAAGTTAAACAATGGTGAGATTATTGATAGAAAATGGTTGGTTTATTCCAAACATGTAGACAAAGTTTATTGCTTCTGTTGCAAATTGTTTAAATCTGATATTAACAGAAGTTTGTTAGCAAATGTCGGGTTTAGAGATTGGAAGCATATTAGTGAAAGACTTAAGCAACACGAGAATAGCACTGAACATATGACTAACATGAATACTTGGAATGAGTTGAGAGTAAGATTCGACAAAAATCAAACAATTGATAAAAATTTACAACAACAGGTTATGAAAGAGAAAGAACGTTGGAGACAAGTTTTACGTAGAATCCATTCTGTTGTGAAATTTCTTGCTAAGAACAATCTTGCTTTTCGCGGATCTAATGAGAAACTATATCAAGATAGCAATGGGATATTTTTGGGAACGGTTGAAATGATTGCGGAGTTTGATTTGGTAATGCAAGAACATATTAGACGCATTAAAAGTCAGGAAATTCATTATCATTATCTTGGCCATAAAATTCAAAATGAGTTCATCTCACTGTTAGCCCAAAATGTGAAAAATTCCATAATAAAGATAATAAAAGAAGCCAAGTATTTTTCTATTATTCTTGATTGTACCCCCGATACGAGTAATCAAGAACAAATGACTTTAATAATACGATGTGTGAATATGTCAAGTCAAAACATAAAAATAGAAGAGTACTTTCTTGAGTTTCTAAAGGTGGATGATACAAGTGGGTTGGGACTCTTTAATGAACTACTTGATGTTTTGAAATGTTTAAATCTATGTGTTGATGATGTGAGGGGTCAAGGCTATGATAATGGTTCAAATATGAAAGGTAAGCATCAAGGAGTTCAAAAGAGGTTACTTGAAATAAATCCGAGAGCCTTATATATGCCATGTGCTTGTCATAGCCTTAATCTCACTCGTAGTGATATGGCACATTCTTGTACTAAAGCTATTTCATTTTTTGGGATTGTTCAACGTATGTATTGTTTATTTTCAAGTTCTACAAAAAGATGGAAAACTTTCCTTGATTTTGTTCCCGGTTTGACTGTGAAATCTTTGTCTAATACTCGTTGGGAGAGTCGCGTTAAAAGTGTCAAACCTATTAGATTTCAAGCTCCTCAACTAAGGTTGGCTTTGTTGGAATTATCTGAAACTTGTGGTAAAGATGCCAAGGCAAAAAGTGAAGCAGAAAGTATGATTAATGCACTTCAAAGTTTTGAGTTTTTATTTGGTATGGTTATTTGGTATGAAGTTTTATTTACTATTAACATGGTGAGTAAAAAGTTACAATCTAAGTCCATGTGCATCGACGTTACTATTAAGCAAGTACAAGGTATACTGTCATATTTTGAAAACTATAGAGATAAAGGTTTTGAATCTTGTATGATAGTTGCTAAAACTGTTGCTTTTGATATGAATGTAGAGCCTATCCTTCCAACTAGACGGCTTATTACTAGGAAGAAGCAATTTGATGAGCATGATCATGATGAGGAAATTATGTCACCAGAAGAGTCATTTCGAATTAACTATTTTTTGGTTGTTGTGGATATGGCTATTAGTTCTTTGAAAAGTAGATTTGAGCAACTAAAGATTTTCGAAAGTATATTTGGGTTTTTATGCGATTCAAATAAGCTAAAGTCTTTAGATGAAATTCATTTAAGAAAATGTTGAGAAAACCTGTACTCTACGTTTTCTCATGGTGATGTATCAGATTTTGATTTAAATGATCTTTTCTCCGAATTAAAAGTGTTACAAGTAACATTGCCAAACGAATTACTATCATCCATTGAAATTCTTGAATTTGTCAAAGCCATAGATTGTTATCCAAATGTTTCTGTAGCTTATAGAATTTTATTAACAGTACCTATGACTGTAGCATCTGCCGAGAGAAGTTTTTCAAAATTAAAATTAATAAAGACTTACTTGAGATCATCAATGTCGCAGGAAAGATTAAGTGGATTAGCAATTTTATCTATCGAGAAAGACATATTGGAAAACATTGATGCTGATGATATTATTAATGATTTTGCATCTCGAAATGCTAGAAGAAATCGTCTAATTTAATTTTTTGTGTTTTTGGTTTTGAAGTTGGCGGGATAAATGAGGGCAAACCGAAGGATGAACACTGAAGTGGCTAGTGACTTTAGCAAAAAGGGCCCCAACTTGACATCTCGCCCCGGGCCCTCAAAAAGTCAGGACCGGGCCTGGTGTGTGGTTGGCTGGTTTCTTGGTTACCTAGAAAGGTGGGAACTTCTTCATATCTCCCGTAATTTATAAACAAACCCAAAATAAATAAGAACATTTTTCTGTCAAACAACAACCTTTTTGTATCTACACCAAACTACCTTAGCAATTAGCATCCCGCCCTAAGCGGGGTATATGGTATGATTTCAGGTGGTTTTAAATTTTCTGATGTGCACTGTAAGTCTGTGACATAGTCTTAAGCTCTAAACTCATAGTTTCTGAAATCTCTGCAAGAGAAAATGTTTGTATGAGAGCAATGGTAGTTGATTTAGCAGGAAAAATTTAGTGGGAACAACTGACCAATTGAATTTGCAGTGGCTGATAAGATGACAAGGGAATGAGGGTAACTGAAAGCTGAACTGAAAATAAATAGATCATAAGGTTGACTTAGTTGTGTTGGTTTCAGTCAGTATGCTCTTGTTGGCTGTTGACCTTAGCTAGGTGATTAGGTGGCTGTTGAAAGCTTTGCCACCTAGCAGGCAAGTCATGCTTAAGAATCTGCAGATTATAAACTAATCAGCTTCCATAAAATAGAAAGTACAAATGGGAGGAACCATTCAATCTCCATCCTAGATAATTTCCAATAAAATGAAACCCCACTCATATTAAAATTCTTTTCCAGCAACAGAACTGACAAACAAAAGATAATGAAGGGATTTACGAACTAAAACACAAGACTAAGGGGTTACGGAAAAAAGTCATGTTAAAAGCGATCACCCTAAACATGATAAGGATCTTATGAAAGAGAAATTCTTTAAGCAACCACCACCCAAATATCTATTCCAATGTACGTTGTTAGTCAGAACAACAACAACTCATTAACTCAGTGCACTCTCTAAAATATTCACCACAGTAGATATTATAAGCCTTCTTGTTGCATCAGTGTGCATGCATCATTTTGTTAGCTTCATCATCTTCTCTAATTCTTCGCCATTTTTCTACACATCATCGCTGCATATGTCTATCAGGTCTAGCAGAAGCTAGTTAAAATGAGTGTTCCCATGCTCATAACCTTTAGTGTTAAATAATTCAGGTTTTTATATGTTGGCCATATGTTAATATTAGAAATTTAACCTTATGTTTTTTTTGTTCTATTCAATTTCAGTAGCCTTTTGTTGCTAGCTCGTCATACATAGGAGGTGATGCAGCATTCTTATCATAAGCAGTCCTTCTCTCGAATTCTTGTATTGCCATGCCTTTGATGCTAACAGAATCTTCAAAGTTTCCTGATGTATTTCTGTCAGAAAAATAGGGTAAACATTCTTCAGACTTCGCATCTGCAACAAGATAAGAGAGTAAGATTTCATGAAACAAGCCTTTACTAAACTCATATTAAGACTTAAAAGTCGAATAAGCCTTTAATTCTAGTTGATTACCTTCTTTGAGTGAGTCAAGATATTTCTTGAGTAATCCCAACTCCGTTCTTGCAAACAGTTGAATAGTTTGATAACCCAAATCAGAG

mRNA sequence

ATGGATAAATTTGTTATTAAAAAAAATAATTCTCAAGAAAATTGTAGTGGTACTTTTAATGGGGATCAGTTGACTGCAAACTTAGATCATGAAAATTATATTAGTGATCACGAGCCTAATGTTGTTCCTAATGTGTCTATTGATGTGCCAAATGTGTCGAATGATGTGCCAATTGAGCCTAATGAAGTGCCAATTGAGCACAATGAAAATCCCAATGTCGGTGAAGATGAAACTATCCCTGACATTTATGATCCTGCAAATTGGGATAATTTGGATCACAAGGAAAGAGACATCTTAGTTGAGAAAGGGCCTCCTGTGGATGATACAAGTGGGTTGGGACTCTTTAATGAACTACTTGATGTTTTGAAATGTTTAAATCTATGTGTTGATGATGTGAGGGGTCAAGGCTATGATAATGGTTCAAATATGAAAGAGCCTATCCTTCCAACTAGACGGCTTATTACTAGGAAGAAGCAATTTGATGAGCATGATCATGATGAGGAAATTATGTCACCAGAAGAGTCATTTCGAATTAACTATTTTTTGGTTGTTGTGGATATGGCTATTAGTTCTTTGAAAAGTAGATTTGAGCAACTAAAGATTTTCGAAATTGGCGGGATAAATGAGGGCAAACCGAAGGATGAACACTGAAGTGGCTAGTGACTTTAGCAAAAAGGGCCCCAACTTGACATCTCGCCCCGGGCCCTCAAAAAGTCAGGACCGGGCCTGGTGTGTGGTTGGCTGGTTTCTTGGTTACCTAGAAAGCCTTTTGTTGCTAGCTCGTCATACATAGGAGGTGATGCAGCATTCTTATCATAAGCAGTCCTTCTCTCGAATTCTTGTATTGCCATGCCTTTGATGCTAACAGAATCTTCAAAGTTTCCTGATGTATTTCTGTCAGAAAAATAGGGTAAACATTCTTCAGACTTCGCATCTGCAACAAGATAAGAGAGTAAGATTTCATGAAACAAGCCTTTACTAAACTCATATTAAGACTTAAAAGTCGAATAAGCCTTTAATTCTAGTTGATTACCTTCTTTGAGTGAGTCAAGATATTTCTTGAGTAATCCCAACTCCGTTCTTGCAAACAGTTGAATAGTTTGATAACCCAAATCAGAG

Coding sequence (CDS)

ATGGATAAATTTGTTATTAAAAAAAATAATTCTCAAGAAAATTGTAGTGGTACTTTTAATGGGGATCAGTTGACTGCAAACTTAGATCATGAAAATTATATTAGTGATCACGAGCCTAATGTTGTTCCTAATGTGTCTATTGATGTGCCAAATGTGTCGAATGATGTGCCAATTGAGCCTAATGAAGTGCCAATTGAGCACAATGAAAATCCCAATGTCGGTGAAGATGAAACTATCCCTGACATTTATGATCCTGCAAATTGGGATAATTTGGATCACAAGGAAAGAGACATCTTAGTTGAGAAAGGGCCTCCTGTGGATGATACAAGTGGGTTGGGACTCTTTAATGAACTACTTGATGTTTTGAAATGTTTAAATCTATGTGTTGATGATGTGAGGGGTCAAGGCTATGATAATGGTTCAAATATGAAAGAGCCTATCCTTCCAACTAGACGGCTTATTACTAGGAAGAAGCAATTTGATGAGCATGATCATGATGAGGAAATTATGTCACCAGAAGAGTCATTTCGAATTAACTATTTTTTGGTTGTTGTGGATATGGCTATTAGTTCTTTGAAAAGTAGATTTGAGCAACTAAAGATTTTCGAAATTGGCGGGATAAATGAGGGCAAACCGAAGGATGAACACTGA

Protein sequence

MDKFVIKKNNSQENCSGTFNGDQLTANLDHENYISDHEPNVVPNVSIDVPNVSNDVPIEPNEVPIEHNENPNVGEDETIPDIYDPANWDNLDHKERDILVEKGPPVDDTSGLGLFNELLDVLKCLNLCVDDVRGQGYDNGSNMKEPILPTRRLITRKKQFDEHDHDEEIMSPEESFRINYFLVVVDMAISSLKSRFEQLKIFEIGGINEGKPKDEH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo08403Spo08403gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo08403.1Spo08403.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08403.1.exon.1Spo08403.1.exon.1exon
Spo08403.1.exon.2Spo08403.1.exon.2exon
Spo08403.1.exon.3Spo08403.1.exon.3exon
Spo08403.1.exon.4Spo08403.1.exon.4exon
Spo08403.1.exon.5Spo08403.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08403.1.CDS.1Spo08403.1.CDS.1CDS
Spo08403.1.CDS.2Spo08403.1.CDS.2CDS
Spo08403.1.CDS.3Spo08403.1.CDS.3CDS
Spo08403.1.CDS.4Spo08403.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08403.1.utr3p.1Spo08403.1.utr3p.1three_prime_UTR
Spo08403.1.utr3p.2Spo08403.1.utr3p.2three_prime_UTR


Homology
[Close]
BLAST of Spo08403.1 vs. NCBI nr
Match: gi|1012359324|gb|KYP70508.1| (Zinc finger MYM-type protein 1, partial [Cajanus cajan])

HSP 1 Score: 100.9 bits (250), Expect = 2.900e-18
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 1 

		  

Query: 60  PNEVPIEHNENPNVGEDETIP--DIYDPANWDNLDHKERDILVE--KGPPVDDTSGLGLF 119
           PN+  IE   N ++ E+++ P  DIY P NW+NLD+K +DIL+E  +   VDDTSGLGLF
Sbjct: 2   PNKFSIE---NFDIKEEQSNPHLDIYHPINWNNLDNKVKDILIEFLEFLKVDDTSGLGLF 61

Query: 120 NELLDVLKCLNLCVDDVRGQGYDNGSNMK 145
           NELL VLK LNL V+DVRGQGYDNGSNMK
Sbjct: 62  NELLVVLKALNLNVNDVRGQGYDNGSNMK 87
[Close]
BLAST of Spo08403.1 vs. NCBI nr
Match: gi|727450960|ref|XP_010507183.1| (PREDICTED: zinc finger MYM-type protein 1-like [Camelina sativa])

HSP 1 Score: 99.8 bits (247), Expect = 6.400e-18
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = 1 

		  

Query: 106 VDDTSGLGLFNELLDVLKCLNLCVDDVRGQG-------YDNGSNMKEPIL---------- 165
           VDDT+GLGLF++LLD LK L L  +++RGQG             +++ +L          
Sbjct: 155 VDDTTGLGLFDKLLDALKSLTLDFENIRGQGYDNGSNMKGKHQGVQKRLLDVNPKALYMP 214

Query: 166 -------------PTRRLITRKKQFDEHDHDEEIMSPEESFRINYFLVVVDMAISSLKSR 204
                        P +R + RKKQFDE   DEEI S E++FR+NYFLVVVDMAI+S+K+R
Sbjct: 215 CACHSLNFVILYFPHKRRVFRKKQFDEIGLDEEIQSSEDAFRVNYFLVVVDMAITSVKTR 274
[Close]
BLAST of Spo08403.1 vs. NCBI nr
Match: gi|731319673|ref|XP_010670398.1| (PREDICTED: zinc finger MYM-type protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 99.4 bits (246), Expect = 8.300e-18
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 1 

		  

Query: 130 DDVRGQGYDNGSNMK---------EPILPTRRLITRKKQFDEHDHDEEIMSPEESFRINY 189
           ++ R +G++N  N           EPILPT+R + RK+QFDE++ DE + SPEESFR+NY
Sbjct: 644 ENYRNEGFENSMNSAKSLAIDMNIEPILPTKRHVFRKRQFDENNQDEAMQSPEESFRVNY 703

Query: 190 FLVVVDMAISSLKSRFEQLKIFE 204
           FLVVVDMAI+SLK RFEQLK+FE
Sbjct: 704 FLVVVDMAIASLKDRFEQLKVFE 726
[Close]
BLAST of Spo08403.1 vs. NCBI nr
Match: gi|731356790|ref|XP_010689867.1| (PREDICTED: zinc finger MYM-type protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.4 bits (228), Expect = 1.000e-15
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 1 

		  

Query: 135 QGYDNGSNMK---------EPILPTRRLITRKKQFDEHDHDEEIMSPEESFRINYFLVVV 194
           +G++N  N           EP LPT+R + RK+QFDE++ DE   SPEESFR+NYFLVVV
Sbjct: 527 EGFENSMNSAKSLAIDMNIEPNLPTKRHVFRKRQFDENNQDEASQSPEESFRVNYFLVVV 586

Query: 195 DMAISSLKSRFEQLKIFE 204
           DMAI+SLK RFEQLK+FE
Sbjct: 587 DMAIASLKDRFEQLKVFE 604
[Close]
BLAST of Spo08403.1 vs. NCBI nr
Match: gi|731341655|ref|XP_010682004.1| (PREDICTED: zinc finger MYM-type protein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.0 bits (227), Expect = 1.300e-15
Identity = 54/153 (35.29%), Postives = 83/153 (54.25%), Query Frame = 1 

		  

Query: 81  DIYDPANWDNLDHKERDILVEKGPPVDDTSGLGLFNELLDVLK-----------CLNLCV 140
           ++YD +  D     E + L       +   G+ ++ E+L  +            C+   +
Sbjct: 532 ELYDSSGDDAKTKSEAESLANSIGSFEFLLGMVIWYEILFAINIVSKKLQSKSMCIGTTM 591

Query: 141 DDVRG----------QGYDNGSNMK---------EPILPTRRLITRKKQFDEHDHDEEIM 200
            +V G          +G+++  N+          EP LPT+R I RK++FDE+D D E+ 
Sbjct: 592 KEVEGIMSYFEKYRIEGFESSMNIAKSLAIDIDIEPTLPTKRRIFRKRRFDENDSDGEMQ 651

Query: 201 SPEESFRINYFLVVVDMAISSLKSRFEQLKIFE 204
           SPEESFR+NYFLVVVDMAI+SL +RFEQL++F+
Sbjct: 652 SPEESFRVNYFLVVVDMAITSLNNRFEQLQVFQ 684
[Close]
BLAST of Spo08403.1 vs. UniProtKB/TrEMBL
Match: A0A151TU32_CAJCA (Zinc finger MYM-type protein 1 (Fragment) OS=Cajanus cajan GN=KK1_009727 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.000e-18
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 1 

		  

Query: 60  PNEVPIEHNENPNVGEDETIP--DIYDPANWDNLDHKERDILVE--KGPPVDDTSGLGLF 119
           PN+  IE   N ++ E+++ P  DIY P NW+NLD+K +DIL+E  +   VDDTSGLGLF
Sbjct: 2   PNKFSIE---NFDIKEEQSNPHLDIYHPINWNNLDNKVKDILIEFLEFLKVDDTSGLGLF 61

Query: 120 NELLDVLKCLNLCVDDVRGQGYDNGSNMK 145
           NELL VLK LNL V+DVRGQGYDNGSNMK
Sbjct: 62  NELLVVLKALNLNVNDVRGQGYDNGSNMK 87
[Close]
BLAST of Spo08403.1 vs. UniProtKB/TrEMBL
Match: M5W0U5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021879mg PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.900e-13
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1 

		  

Query: 145 EPILPTRRLITRKKQFDEHDHDEEIMSPEESFRINYFLVVVDMAISSLKSRFEQLKIFE 204
           +P+ P +R   RK QFDE+DH E   S EESFR+NYFLVVVD AISSL+SRFEQL+IFE
Sbjct: 390 DPVFPKKRQSQRKNQFDENDHKETFQSAEESFRVNYFLVVVDAAISSLRSRFEQLEIFE 448
[Close]
BLAST of Spo08403.1 vs. UniProtKB/TrEMBL
Match: A0A0D2ZUE5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.800e-11
Identity = 47/153 (30.72%), Postives = 80/153 (52.29%), Query Frame = 1 

		  

Query: 81  DIYDPANWDNLDHKERDILVEKGPPVDDTSGLGLFNELLDVLKCLN-------LCVDDV- 140
           ++YD  + D +   E + LV+     +   G+ +++++L  +  ++       +C+D+  
Sbjct: 72  ELYDLCD-DAISKSETESLVDALENFEFLLGIVIWHDILFAINMVSKKLQDKTICIDNAM 131

Query: 141 -------------RGQGYDNGSNMK---------EPILPTRRLITRKKQFDEHDHDEEIM 200
                        R  G+ +  NM          + I P +R   RKKQFDE +H+E I 
Sbjct: 132 KQVAGVMSYFEKYRNDGFSSSINMAKDLAHEMDIDAIFPKKRRCFRKKQFDEANHEEVIQ 191

Query: 201 SPEESFRINYFLVVVDMAISSLKSRFEQLKIFE 204
           + E+ F++NYFL+VVDMAI+SL  RFEQ++ FE
Sbjct: 192 TSEDEFKVNYFLLVVDMAITSLNDRFEQMRTFE 223
[Close]
BLAST of Spo08403.1 vs. UniProtKB/TrEMBL
Match: A0A0D3APS8_BRAOL (Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.100e-11
Identity = 37/94 (39.36%), Postives = 63/94 (67.02%), Query Frame = 1 

		  

Query: 119 LDVLKCLNLCVDDVRGQGYDNGSNMK---------EPILPTRRLITRKKQFDEHDHDEEI 178
           L  L+ + L  +  R +G+++  N+          +P+ P +R + RKKQFDE D  E++
Sbjct: 561 LKQLQGVILFFEKYRDEGFNSSLNVAKNIAHEMDVDPVFPNKRRVFRKKQFDETDSGEQV 620

Query: 179 MSPEESFRINYFLVVVDMAISSLKSRFEQLKIFE 204
           +S E++FR++YFLVVVDMA++S+K+RF+Q+  F+
Sbjct: 621 LSGEDAFRVDYFLVVVDMALTSVKNRFDQMMNFK 654
[Close]
BLAST of Spo08403.1 vs. UniProtKB/TrEMBL
Match: B8AEM0_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06494 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.400e-10
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 

		  

Query: 145 EPILPTRRLITRKKQFDE-HDHDEEIMSPEESFRINYFLVVVDMAISSLKSRFEQLKIFE 204
           EP  PT+R   RKK FDE +D +EE  S  ESFR+NYFLV++D+AI+SL SRFEQLK FE
Sbjct: 408 EPKFPTKRQAKRKKHFDEQNDQNEEQQSVVESFRVNYFLVMIDVAIASLTSRFEQLKAFE 467
[Close]
BLAST of Spo08403.1 vs. TAIR (Arabidopsis)
Match: AT4G10200.1 (TTF-type zinc finger protein with HAT dimerisation domain)

HSP 1 Score: 56.2 bits (134), Expect = 2.800e-8
Identity = 26/39 (66.67%), Postives = 28/39 (71.79%), Query Frame = 1 

		  

Query: 106 VDDTSGLGLFNELLDVLKCLNLCVDDVRGQGYDNGSNMK 145
           V D SG GLF  L D L  LNL ++DVRGQGYDNG NMK
Sbjct: 325 VSDKSGEGLFELLCDTLVALNLNINDVRGQGYDNGCNMK 363
[Close]
BLAST of Spo08403.1 vs. TAIR (Arabidopsis)
Match: AT2G06500.1 (hAT family dimerisation domain)

HSP 1 Score: 54.3 bits (129), Expect = 1.100e-7
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1 

		  

Query: 151 RRLITRKKQFDEHDHDEEIMSPEESFRINYFLVVVDMAISSLKSRFEQLKIFE 204
           +++I RKK FD   H    +S EE FRINYFL ++D A+ SL+SRFEQ + +E
Sbjct: 377 KKIIRRKKHFD---HGNMKLSTEEDFRINYFLTLIDQALISLESRFEQFQRYE 426
[Close]
BLAST of Spo08403.1 vs. TAIR (Arabidopsis)
Match: AT1G35150.1 (General transcription factor 2-related zinc finger protein)

HSP 1 Score: 48.9 bits (115), Expect = 4.500e-6
Identity = 42/138 (30.43%), Postives = 63/138 (45.65%), Query Frame = 1 

		  

Query: 89  DNLDHKERDILVEKGPPVDD-------TSGLGLFNELL------DVLKCLNLCVDDVRGQ 148
           + L  K ++ LV+    +DD       T G+G+F  L       D+L  +N     ++  
Sbjct: 301 EGLFSKIKEALVDMELEIDDVRGQESETHGIGVFEILFGMILWYDLLAVVNRVSKTLQSA 360

Query: 149 GYD--------NGSNMK---EPILPTRRLITRKKQFDEHDH--DEEI-MSPEESFRINYF 200
             D         G +M    E ++  +R I RKK FDE     DE + +SPEE FRINYF
Sbjct: 361 DIDIDVAIIELKGLDMDIEAEFLVKKKRTIRRKKHFDEVSEKGDENMDLSPEEDFRINYF 420
The following BLAST results are available for this feature:
BLAST of Spo08403.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|1012359324|gb|KYP70508.1|2.9e-1862.9Zinc finger MYM-type protein 1... [more]
gi|727450960|ref|XP_010507183.1|6.4e-1844.5PREDICTED: zinc finger MYM-typ... [more]
gi|731319673|ref|XP_010670398.1|8.3e-1857.8PREDICTED: zinc finger MYM-typ... [more]
gi|731356790|ref|XP_010689867.1|1.0e-1558.9PREDICTED: zinc finger MYM-typ... [more]
gi|731341655|ref|XP_010682004.1|1.3e-1535.2PREDICTED: zinc finger MYM-typ... [more]
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BLAST of Spo08403.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A151TU32_CAJCA2.0e-1862.9Zinc finger MYM-type protein 1... [more]
M5W0U5_PRUPE1.9e-1367.8Uncharacterized protein OS=Pru... [more]
A0A0D2ZUE5_BRAOL1.8e-1130.7Uncharacterized protein OS=Bra... [more]
A0A0D3APS8_BRAOL3.1e-1139.3Uncharacterized protein (Fragm... [more]
B8AEM0_ORYSI3.4e-1063.3Putative uncharacterized prote... [more]
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BLAST of Spo08403.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08403.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G10200.12.8e-866.6TTF-type zinc finger protein w... [more]
AT2G06500.11.1e-750.9hAT family dimerisation domain[more]
AT1G35150.14.5e-630.4General transcription factor 2... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11697GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEINcoord: 106..203
score: 3.7
NoneNo IPR availablePANTHERPTHR11697:SF113SUBFAMILY NOT NAMEDcoord: 106..203
score: 3.7

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046983 protein dimerization activity