Spo06890.1 (mRNA) | SpinachBase

Overview


Name	Spo06890.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	A0A061FTS5 (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative)
Location	chr5 : 7390965 .. 7391231 (+)
Sequence length	267

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGGAACAATAACGAGACTTCATGGGCAGATCAATGGGATCCACAACCAGCTTACGGCGGCGGCCATGATTATAATGACAACAAAGCGAAGAAGAAGGGCGGCGACAATGGTTCCGGTGGCGGCGCAAAGAAGAAGGTTGAAGAAGGACTTGCTAAGACTAAGGATGTTGCTTCTACTGGTTTTAAGAAGGTCAAACAGGGTACTTCGTTTGGGTTCAATTGGATCAAAGACAAGTGCCAGAAAACCACCCAAAAAGAGTGA

mRNA sequence

ATGTCAGGGAACAATAACGAGACTTCATGGGCAGATCAATGGGATCCACAACCAGCTTACGGCGGCGGCCATGATTATAATGACAACAAAGCGAAGAAGAAGGGCGGCGACAATGGTTCCGGTGGCGGCGCAAAGAAGAAGGTTGAAGAAGGACTTGCTAAGACTAAGGATGTTGCTTCTACTGGTTTTAAGAAGGTCAAACAGGGTACTTCGTTTGGGTTCAATTGGATCAAAGACAAGTGCCAGAAAACCACCCAAAAAGAGTGA

Coding sequence (CDS)

ATGTCAGGGAACAATAACGAGACTTCATGGGCAGATCAATGGGATCCACAACCAGCTTACGGCGGCGGCCATGATTATAATGACAACAAAGCGAAGAAGAAGGGCGGCGACAATGGTTCCGGTGGCGGCGCAAAGAAGAAGGTTGAAGAAGGACTTGCTAAGACTAAGGATGTTGCTTCTACTGGTTTTAAGAAGGTCAAACAGGGTACTTCGTTTGGGTTCAATTGGATCAAAGACAAGTGCCAGAAAACCACCCAAAAAGAGTGA

Protein sequence

MSGNNNETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVASTGFKKVKQGTSFGFNWIKDKCQKTTQKE

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo06890	Spo06890	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo06890.1	Spo06890.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06890.1.exon.1	Spo06890.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo06890.1.CDS.1	Spo06890.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo06890.1 vs. NCBI nr
Match: gi|902192477|gb|KNA12053.1| (hypothetical protein SOVF_129400 [Spinacia oleracea])

HSP 1 Score: 176.0 bits (445), Expect = 2.800e-41
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1

		  
Query: 1  MSGNNNETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 60
          MSGNNNETSWADQWD QPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS
Sbjct: 1  MSGNNNETSWADQWDLQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 60

Query: 61 TGFKKVKQGTSFGFNWIKDKCQKTTQKE 89
          TGFKKVKQGTSFGFNWIKDKCQKTTQKE
Sbjct: 61 TGFKKVKQGTSFGFNWIKDKCQKTTQKE 88

[Close]

BLAST of Spo06890.1 vs. NCBI nr
Match: gi|731335356|ref|XP_010678686.1| (PREDICTED: uncharacterized protein LOC104894204 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 109.0 bits (271), Expect = 4.300e-21
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 1

		  
Query: 2  SGNNN-ETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 61
          SGN N E+SWADQWDPQPAY      ++N++K K  +N SGGGAKKKVEEGL KTK+VAS
Sbjct: 3  SGNTNYESSWADQWDPQPAYVS----HENESKNKKKNNESGGGAKKKVEEGLTKTKEVAS 62

Query: 62 TGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          T FKKVKQGTS G +WIKDK  KTTQK
Sbjct: 63 TSFKKVKQGTSMGISWIKDKYHKTTQK 85

[Close]

BLAST of Spo06890.1 vs. NCBI nr
Match: gi|1000984674|ref|XP_015579178.1| (PREDICTED: uncharacterized protein LOC8258122 [Ricinus communis])

HSP 1 Score: 86.3 bits (212), Expect = 3.000e-14
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 1

		  
Query: 3  GNNNETSWADQWD--PQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 62
          G++NETSWADQWD  P P     HDY ++K+        S    K+KV EGL KTK+VAS
Sbjct: 2  GSSNETSWADQWDDGPDPV----HDYQNSKSNS----TSSTAKYKQKVGEGLGKTKEVAS 61

Query: 63 TGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          TGFKKVK+GT  GF+WIKDK QK TQK
Sbjct: 62 TGFKKVKEGTVSGFHWIKDKYQKKTQK 80

[Close]

BLAST of Spo06890.1 vs. NCBI nr
Match: gi|224135737|ref|XP_002322148.1| (hypothetical protein POPTR_0015s08200g [Populus trichocarpa])

HSP 1 Score: 82.0 bits (201), Expect = 5.600e-13
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 1

		  
Query: 1  MSGNNN-ETSWADQWD--PQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKD 60
          MSGN++ ETSWADQWD  P PA    +D++      K   + S    K+KV EGL KTK 
Sbjct: 1  MSGNSSHETSWADQWDYNPDPAV---YDHS------KDSSSDSTAKYKQKVGEGLGKTKQ 60

Query: 61 VASTGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          VASTG KKVK+GTS GF WIKDK QKTTQK
Sbjct: 61 VASTGIKKVKEGTSVGFRWIKDKYQKTTQK 81

[Close]

BLAST of Spo06890.1 vs. NCBI nr
Match: gi|661895644|emb|CDP00222.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 81.6 bits (200), Expect = 7.300e-13
Identity = 45/84 (53.57%), Postives = 54/84 (64.29%), Query Frame = 1

		  
Query: 4  NNNETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVASTGF 63
          N +ETSWADQWDP+PAY G ++ N+  +        S      KV +   KTKDVASTG 
Sbjct: 8  NTSETSWADQWDPEPAYNGNYNSNNKSS--------STSKFSSKVGDTFGKTKDVASTGV 67

Query: 64 KKVKQGTSFGFNWIKDKCQKTTQK 88
          KKVK+GT  GF+WIKDK QK  QK
Sbjct: 68 KKVKEGTRAGFHWIKDKYQKRAQK 83

[Close]

BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZB7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_129400 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.000e-41
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1

		  
Query: 1  MSGNNNETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 60
          MSGNNNETSWADQWD QPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS
Sbjct: 1  MSGNNNETSWADQWDLQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 60

Query: 61 TGFKKVKQGTSFGFNWIKDKCQKTTQKE 89
          TGFKKVKQGTSFGFNWIKDKCQKTTQKE
Sbjct: 61 TGFKKVKQGTSFGFNWIKDKCQKTTQKE 88

[Close]

BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAA2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g116260 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.000e-21
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 1

		  
Query: 2  SGNNN-ETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 61
          SGN N E+SWADQWDPQPAY      ++N++K K  +N SGGGAKKKVEEGL KTK+VAS
Sbjct: 3  SGNTNYESSWADQWDPQPAYVS----HENESKNKKKNNESGGGAKKKVEEGLTKTKEVAS 62

Query: 62 TGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          T FKKVKQGTS G +WIKDK  KTTQK
Sbjct: 63 TSFKKVKQGTSMGISWIKDKYHKTTQK 85

[Close]

BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Match: B9R8Y7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1512610 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.100e-14
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 1

		  
Query: 3  GNNNETSWADQWD--PQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 62
          G++NETSWADQWD  P P     HDY ++K+        S    K+KV EGL KTK+VAS
Sbjct: 2  GSSNETSWADQWDDGPDPV----HDYQNSKSNS----TSSTAKYKQKVGEGLGKTKEVAS 61

Query: 63 TGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          TGFKKVK+GT  GF+WIKDK QK TQK
Sbjct: 62 TGFKKVKEGTVSGFHWIKDKYQKKTQK 80

[Close]

BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Match: B9IEL5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08200g PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.900e-13
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 1

		  
Query: 1  MSGNNN-ETSWADQWD--PQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKD 60
          MSGN++ ETSWADQWD  P PA    +D++      K   + S    K+KV EGL KTK 
Sbjct: 1  MSGNSSHETSWADQWDYNPDPAV---YDHS------KDSSSDSTAKYKQKVGEGLGKTKQ 60

Query: 61 VASTGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          VASTG KKVK+GTS GF WIKDK QKTTQK
Sbjct: 61 VASTGIKKVKEGTSVGFRWIKDKYQKTTQK 81

[Close]

BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Match: A0A068TW42_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032103001 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.100e-13
Identity = 45/84 (53.57%), Postives = 54/84 (64.29%), Query Frame = 1

		  
Query: 4  NNNETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVASTGF 63
          N +ETSWADQWDP+PAY G ++ N+  +        S      KV +   KTKDVASTG 
Sbjct: 8  NTSETSWADQWDPEPAYNGNYNSNNKSS--------STSKFSSKVGDTFGKTKDVASTGV 67

Query: 64 KKVKQGTSFGFNWIKDKCQKTTQK 88
          KKVK+GT  GF+WIKDK QK  QK
Sbjct: 68 KKVKEGTRAGFHWIKDKYQKRAQK 83

[Close]

BLAST of Spo06890.1 vs. TAIR (Arabidopsis)
Match: AT3G48180.1 (unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.600e-10
Identity = 40/83 (48.19%), Postives = 48/83 (57.83%), Query Frame = 1

		  
Query: 9  SWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGA----KKKVEEGLAKTKDVASTGFK 68
          SWA+QWD           ++ ++  K    G GGGA    K+KV  GL KTK  AS+G K
Sbjct: 5  SWAEQWD-----------SNQQSSGKTTHGGEGGGASSKYKEKVGAGLGKTKAAASSGLK 64

Query: 69 KVKQGTSFGFNWIKDKCQKTTQK 88
          KVK GTS G NW+KDK  KTT K
Sbjct: 65 KVKIGTSLGLNWVKDKYNKTTTK 76

[Close]

BLAST of Spo06890.1 vs. TAIR (Arabidopsis)
Match: AT1G19020.1 (unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.600e-10
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1

		  
Query: 6  NETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAK--KKVEEGLAKTKDVASTGF 65
          N TSWADQWD       G         +  G   +    K  +K+ +GL KTK VAS+GF
Sbjct: 2  NGTSWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKTKAVASSGF 61

Query: 66 KKVKQGTSFGFNWIKDKCQKTTQKE 89
          KK+K G++ GF W+KDK  KTT K+
Sbjct: 62 KKLKTGSAIGFRWVKDKYHKTTHKQ 86

The following BLAST results are available for this feature:

BLAST of Spo06890.1 vs. NCBI nr
BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
BLAST of Spo06890.1 vs. ExPASy Swiss-Prot
BLAST of Spo06890.1 vs. TAIR (Arabidopsis)

BLAST of Spo06890.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902192477\|gb\|KNA12053.1\|	2.8e-41	98.8	hypothetical protein SOVF_1294...	[more]
gi\|731335356\|ref\|XP_010678686.1\|	4.3e-21	70.1	PREDICTED: uncharacterized pro...	[more]
gi\|1000984674\|ref\|XP_015579178.1\|	3.0e-14	58.6	PREDICTED: uncharacterized pro...	[more]
gi\|224135737\|ref\|XP_002322148.1\|	5.6e-13	58.8	hypothetical protein POPTR_001...	[more]
gi\|661895644\|emb\|CDP00222.1\|	7.3e-13	53.5	unnamed protein product [Coffe...	[more]

BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QZB7_SPIOL	2.0e-41	98.8	Uncharacterized protein OS=Spi...	[more]
A0A0J8CAA2_BETVU	3.0e-21	70.1	Uncharacterized protein OS=Bet...	[more]
B9R8Y7_RICCO	2.1e-14	58.6	Putative uncharacterized prote...	[more]
B9IEL5_POPTR	3.9e-13	58.8	Uncharacterized protein OS=Pop...	[more]
A0A068TW42_COFCA	5.1e-13	53.5	Uncharacterized protein OS=Cof...	[more]

BLAST of Spo06890.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo06890.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT3G48180.1	1.6e-10	48.1	unknown protein	[more]
AT1G19020.1	1.6e-10	43.5	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33386	FAMILY NOT NAMED	coord: 3..88 score: 4.7
None	No IPR available	PANTHER	PTHR33386:SF4	SUBFAMILY NOT NAMED	coord: 3..88 score: 4.7