Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAAGAGCAATGCCATGAGTAAAAATGAGCAAAACAAATACACTTCTTAAGTATTATCAAATCTTATCTCAAAAGTGTTTAGCTAACATTATGAGTTTCTCCAAATTTGCCGTATTTGCCGTATTTGCCCTTTTCATGCTCGCTACATCAGGTATATATGCATAGAGTTAGTTTAATTTCACATTTGTTAATGTATATTTTTAACCATTAAATTTCCTTTAAAATGTATACAGAAGAGAATATAACAAGACCTCACATAATTATCTTTTATGTTAATTATTATACTCGGGACTAATATAACAAGATCTCGACGTGTGAAAATGGTGTTATTATAAGAAAATGGAGGAATTGAAGTTTATTATGCATTAATTATTTATCATAACATCTCCAAACTTACCGGCTTATATTCTCTGTGTCTCAGATTAATTAGTTGTTATATTTTTAATTATCGTAATTGAAATATCTCCAAACTTCAAGACATGTGGTTAACTATTAATATTACAATTGTGTTGTAACAAAAATATAAAGGACTTTCATATTACGACTATGAAATATTAATAAGAGTAACGAAACTAAAAATTAAAGATTTAAACTAATCCGAATTGGAGGAGAGTATAAAATTCAATAATTATTTTCCCACGGAGTAACGTTTTGCCGTCACAAAAATGTGTCGATTTATGTAGATGTAGACTGAAATTATTTGAATTTTCAGGTGTGATAGATGCGAAATATCAACCCAGAAGCAGTGGATCGATAATGACTGAGGAGCTTCTGGAGGCCGAAGTGAAGGCATTGGCATCACTTAGAGAAGTGGAAAGGGCTGTTATTGCTTCAAAGTTGAAGCAAAATCTGATGATGAGGACTACTGAAGATAATTGTATTAAATCAGGGACCATATGTTCGGGTTTCGGACCTCCAGAACAATGTTGTTCCGGCGCTTGTGTTCCTCATCCTATAATTAAGATGTTTGTATGCCAGTAAAAGGTTATTTGGGTCGATCATCACCTTCAATTCCCTTTGTTAATTATATATGTACTCCAATTATCCGTACTTTTTAGTGTATCCATGTACGAGATAGAATAAAATTGACCAAGGTGTTGGTGATGGAATGCTTCTACATATGTTGTACGTCTCAAGAGACTTGAGTGTTAGTTCTTGGGATCTTTTACCAAACTGGCTACTTTTAAAATTTTATTTACCAAAATGGCTACTTTTAAATTCTATTTCCCAAACTAGCTATTTCGTATTATTTATTTACCAAAATGACTATTTTGACATTGAGACAAAAAAAAAAAACCATTAAACTGGTTTGGTTTTTATTTTTTAATATATATGTAAACCAGTTTTATATTTTTTTTATTTTAGACAAAAAAAGAATTAATAAACACTAAAACCTTTAAACTTAAATTTAAAAACTTCGTAAACTTAAATATGATAACTCCATAACTAACCATTGTCCCTAATATTCGTCCAAAGCAACATGTATTCCCAGTAGAACTCGATACTCAGGAAAAAAAAAATGACATAAATAGGGTAATGAACGAAAGAAGGTACAAATTCAAATATGGTCAAGTAGACAATTGAGGCTATTTAAAACCCAAATCAGTTTAATATTTTGTTTTTTAAATACTCAAACCAAACTGGTTCACTATTTAAAAAAAATCAAACCGGTTCACTATTTTTTTAAAAAAAATATCAAACCGGTTCACTATTAAAAAAAATATGTATCAAACCGGTTCACTATTAAAAAGAAAATCAAAGCGGTTCACTATTTTAAAAAAGCTCAAACCGGTTCAATATAAAAATAAAAACTTAGACCGATTCATTGCTTTTACTTTAAAATCAAAATTAAAATATAGCTAGTTTAAAATCTAAATAATAGCTAGTTTGTGGTGCATACGATGTGTATAGTGATGCCTCTAAGAATGGTTTAGGGTGTGTATTGATGCAGAACGAGAAGGTTATTGCGTATGCGTCAAGGCAATTGAAGCCATATGAATCCAATTACCCTACCCATGATTTAGAGCTGGCTGCTATAGTGTTTGCATTGAAGATATGGAGACACTATCTGTACGGTGTGAAGTGTAGGATATTTA ATAAGAGCAATGCCATGAGTAAAAATGAGCAAAACAAATACACTTCTTAAGTATTATCAAATCTTATCTCAAAAGTGTTTAGCTAACATTATGAGTTTCTCCAAATTTGCCGTATTTGCCGTATTTGCCCTTTTCATGCTCGCTACATCAGGTGTGATAGATGCGAAATATCAACCCAGAAGCAGTGGATCGATAATGACTGAGGAGCTTCTGGAGGCCGAAGTGAAGGCATTGGCATCACTTAGAGAAGTGGAAAGGGCTGTTATTGCTTCAAAGTTGAAGCAAAATCTGATGATGAGGACTACTGAAGATAATTGTATTAAATCAGGGACCATATGTTCGGGTTTCGGACCTCCAGAACAATGTTGTTCCGGCGCTTGTGTTCCTCATCCTATAATTAAGATGTTTGTATGCCAGTAAAAGGTTATTTGGGTCGATCATCACCTTCAATTCCCTTTGTTAATTATATATGTACTCCAATTATCCGTACTTTTTAGTGTATCCATGTACGAGATAGAATAAAATTGACCAAGGTGTTGGTGATGGAATGCTTCTACATATGTTGTACGTCTCAAGAGACTTGAGTGTTAGTTCTTGGGATCTTTTACCAAACTGGCTACTTTTAAAATTTTATTTACCAAAATGGCTACTTTTAAATTCTATTTCCCAAACTAGCTATTTCGTATTATTTATTTACCAAAATGACTATTTTGACATTGAGACAAAAAAAAAAAACCATTAAACTGGTTTGGTTTTTATTTTTTAATATATATGTAAACCAGTTTTATATTTTTTTTATTTTAGACAAAAAAAGAATTAATAAACACTAAAACCTTTAAACTTAAATTTAAAAACTTCGTAAACTTAAATATGATAACTCCATAACTAACCATTGTCCCTAATATTCGTCCAAAGCAACATGTATTCCCAGTAGAACTCGATACTCAGGAAAAAAAAAATGACATAAATAGGGTAATGAACGAAAGAAGGTACAAATTCAAATATGGTCAAGTAGACAATTGAGGCTATTTAAAACCCAAATCAGTTTAATATTTTGTTTTTTAAATACTCAAACCAAACTGGTTCACTATTTAAAAAAAATCAAACCGGTTCACTATTTTTTTAAAAAAAATATCAAACCGGTTCACTATTAAAAAAAATATGTATCAAACCGGTTCACTATTAAAAAGAAAATCAAAGCGGTTCACTATTTTAAAAAAGCTCAAACCGGTTCAATATAAAAATAAAAACTTAGACCGATTCATTGCTTTTACTTTAAAATCAAAATTAAAATATAGCTAGTTTAAAATCTAAATAATAGCTAGTTTGTGGTGCATACGATGTGTATAGTGATGCCTCTAAGAATGGTTTAGGGTGTGTATTGATGCAGAACGAGAAGGTTATTGCGTATGCGTCAAGGCAATTGAAGCCATATGAATCCAATTACCCTACCCATGATTTAGAGCTGGCTGCTATAGTGTTTGCATTGAAGATATGGAGACACTATCTGTACGGTGTGAAGTGTAGGATATTTA ATGAGCAAAACAAATACACTTCTTAAGTATTATCAAATCTTATCTCAAAAGTGTTTAGCTAACATTATGAGTTTCTCCAAATTTGCCGTATTTGCCGTATTTGCCCTTTTCATGCTCGCTACATCAGGTGTGATAGATGCGAAATATCAACCCAGAAGCAGTGGATCGATAATGACTGAGGAGCTTCTGGAGGCCGAAGTGAAGGCATTGGCATCACTTAGAGAAGTGGAAAGGGCTGTTATTGCTTCAAAGTTGAAGCAAAATCTGATGATGAGGACTACTGAAGATAATTGTATTAAATCAGGGACCATATGTTCGGGTTTCGGACCTCCAGAACAATGTTGTTCCGGCGCTTGTGTTCCTCATCCTATAATTAAGATGTTTGTATGCCAGTAA MSKTNTLLKYYQILSQKCLANIMSFSKFAVFAVFALFMLATSGVIDAKYQPRSSGSIMTEELLEAEVKALASLREVERAVIASKLKQNLMMRTTEDNCIKSGTICSGFGPPEQCCSGACVPHPIIKMFVCQ Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo27275.1 vs. NCBI nr
Match: gi|902198409|gb|KNA13657.1| (hypothetical protein SOVF_114650 [Spinacia oleracea]) HSP 1 Score: 203.4 bits (516), Expect = 2.500e-49 Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 1
BLAST of Spo27275.1 vs. NCBI nr
Match: gi|902198410|gb|KNA13658.1| (hypothetical protein SOVF_114660 [Spinacia oleracea]) HSP 1 Score: 167.5 bits (423), Expect = 1.500e-38 Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 1
BLAST of Spo27275.1 vs. NCBI nr
Match: gi|902192504|gb|KNA12060.1| (hypothetical protein SOVF_129340 [Spinacia oleracea]) HSP 1 Score: 142.9 bits (359), Expect = 4.000e-31 Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 1
BLAST of Spo27275.1 vs. NCBI nr
Match: gi|902198411|gb|KNA13659.1| (hypothetical protein SOVF_114670 [Spinacia oleracea]) HSP 1 Score: 125.6 bits (314), Expect = 6.600e-26 Identity = 72/109 (66.06%), Postives = 81/109 (74.31%), Query Frame = 1
BLAST of Spo27275.1 vs. NCBI nr
Match: gi|731335337|ref|XP_010678676.1| (PREDICTED: uncharacterized protein LOC104894196 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 104.4 bits (259), Expect = 1.600e-19 Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 1
BLAST of Spo27275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4D4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114650 PE=4 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 1.700e-49 Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 1
BLAST of Spo27275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2C8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114660 PE=4 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 1.100e-38 Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 1
BLAST of Spo27275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXT1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_129340 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 2.800e-31 Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 1
BLAST of Spo27275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R400_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114670 PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 4.600e-26 Identity = 72/109 (66.06%), Postives = 81/109 (74.31%), Query Frame = 1
BLAST of Spo27275.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CER6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g116170 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.100e-19 Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 1
BLAST of Spo27275.1 vs. ExPASy Swiss-Prot
Match: ITR3_SPIOL (Trypsin inhibitor 3 OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.900e-13 Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1
BLAST of Spo27275.1 vs. ExPASy Swiss-Prot
Match: ITR2_SPIOL (Trypsin inhibitor 2 OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.100e-12 Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1
BLAST of Spo27275.1 vs. ExPASy Swiss-Prot
Match: ITR1_SPIOL (Trypsin inhibitor 1 OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 5.400e-12 Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo27275.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo27275.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo27275.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo27275.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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