Spo27245.1 (mRNA) | SpinachBase

Overview


Name	Spo27245.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Histone H1 subtype 7
Location	chr5 : 8858115 .. 8859861 (-)
Sequence length	1275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTGGCACCCACTCATTTCCGTTACGCAATTGCATTCTCTTCTAACTGACGTGCAAAAAATATCTCACACACACACGATCCGTGTCACCCTTTGAAAACCCCAACATCCACCGTTCATTTCTCTCTCATCCTACGGCACACTACCGAACATTTACAAAAATACCCACGATCCGTGTGCTTCCTCCTCCACCAATCAAATCACTCTTTATCCAGTCAATATAAAGTAATCACACTTCTGTCAATTCTCCCCAAAATATTCATTCTGCTTTCTCTTTCCTTCCAATCCGTCTTTCGTACACTTCCGGAAATTCTCTCTCACACTCTCTTTCCTCTTTCTGCGTTTTTACTCAATCTCTGAAGCCATGGCTGCCGCACCTAAAACTGTGAAGAAGGTTACTGCTCCGAAGAAAGCCGCTGCGGCTAAGTCCTCTCCATCTCATCCTCCTTACATCGACGTAAGTATTCTTCACTTTTGATTATTCTTATGAGCTTGATGCGATTTAAAGCTTTTTATGCTGATTATAGATGAGAATATATGCGATTTTCTGTGCTATCGATATGATTTTGTTGACATTCTCGAACTTTTAGGTAGTTTCGTGGTGGTTTGGTTCCTATGAAGTAATATTAGGTTTTCCGATGGTATTTGCTGAAATTTTGTACTATTTTCTGTGATTCCGATCTGTTTATGCTATTATTCGTTGAATTACCGATGTTTCGGTGAATATTTCTTGAAATGGCGTAATTTTAAGCTCAGAATTTATGGACAGTTTTTTCATTTGAAGCTTTAAGGTTATTATTGATGAACTTCTGAGCTATTATTTGTAATTAAGTTTGGATTTGTTAAGTTCTGTTGATGTTTTTTGCATATTACGTATATTCAAATGAAGGTCCGCTGAAATTGATAATTTGCTGGAATTTTATTCACAGATGATTACAGAGGCCTTGGTTTCACTCAAGGAGAGAACCGGATCAAGCCACTACGCAATCGCCAAACACATAGAAGAGCAGCAGAAGGTGAAGGACCTCCCTCCTAACTTCAAGAAGCTTCTGTTCAACCAACTGAAGAAATGCGTCGCATCAGGAAAGCTCGTAATGGTGAAGAAATCCTTCAAACTACCATCTGCCGCGTCGAAGAAGTCTTCATCTCCAGTAGCCGCCCCAGCCGCCGCTGAAAAGGTAAAGGCGAAGCCAAAATCAAAGGAAGTGGCAGAGAAGAAGCCAGCGAAGAAGGAGGCCGCAGCTAAACCTAAGGCTGCGGCAGCGAAACCTAAAGCTGCTGAGAAACCAAAAGCAGCACCGGTGAAGAAACAAAAGGTTGCAGCGAAGTCTCCGGCAAAGAAGGTTGCGCCAGTGAAAGCTAAGAAGTTGAAGAGTATCAAATCGCCGGCGAAGAAAGCTACCGCCGTGAAGAAAACCGTGCCGATGAAGAAGGCTAAGAAGTGAATCAAACGCTGTCGTACTGCTTGATTAGTGCTCGTGAGTTGTAAATTTGTCGATAGGGTTAATGATTGTGGAATAGAGAAGGATGATGATAACTTCTTAGTAGTGGAAAATTTCTAGGGTTTGTAGAAAACTCGACTTAATTACTAGTTTGGTTTGTTTTTGGAATTAGGTTTATGATTAGATTTCCTAATCATTTTACCCAGTTTAGGTTTAATCCTTGTTTTTCTTCTTCAATTTCAATATAAAATTTAAGTTCGCCTAATTTTGATTATGATTTGCTTTGTCTCATTTCCCCAATATTAC

mRNA sequence

AGGTGGCACCCACTCATTTCCGTTACGCAATTGCATTCTCTTCTAACTGACGTGCAAAAAATATCTCACACACACACGATCCGTGTCACCCTTTGAAAACCCCAACATCCACCGTTCATTTCTCTCTCATCCTACGGCACACTACCGAACATTTACAAAAATACCCACGATCCGTGTGCTTCCTCCTCCACCAATCAAATCACTCTTTATCCAGTCAATATAAAGTAATCACACTTCTGTCAATTCTCCCCAAAATATTCATTCTGCTTTCTCTTTCCTTCCAATCCGTCTTTCGTACACTTCCGGAAATTCTCTCTCACACTCTCTTTCCTCTTTCTGCGTTTTTACTCAATCTCTGAAGCCATGGCTGCCGCACCTAAAACTGTGAAGAAGGTTACTGCTCCGAAGAAAGCCGCTGCGGCTAAGTCCTCTCCATCTCATCCTCCTTACATCGACATGATTACAGAGGCCTTGGTTTCACTCAAGGAGAGAACCGGATCAAGCCACTACGCAATCGCCAAACACATAGAAGAGCAGCAGAAGGTGAAGGACCTCCCTCCTAACTTCAAGAAGCTTCTGTTCAACCAACTGAAGAAATGCGTCGCATCAGGAAAGCTCGTAATGGTGAAGAAATCCTTCAAACTACCATCTGCCGCGTCGAAGAAGTCTTCATCTCCAGTAGCCGCCCCAGCCGCCGCTGAAAAGGTAAAGGCGAAGCCAAAATCAAAGGAAGTGGCAGAGAAGAAGCCAGCGAAGAAGGAGGCCGCAGCTAAACCTAAGGCTGCGGCAGCGAAACCTAAAGCTGCTGAGAAACCAAAAGCAGCACCGGTGAAGAAACAAAAGGTTGCAGCGAAGTCTCCGGCAAAGAAGGTTGCGCCAGTGAAAGCTAAGAAGTTGAAGAGTATCAAATCGCCGGCGAAGAAAGCTACCGCCGTGAAGAAAACCGTGCCGATGAAGAAGGCTAAGAAGTGAATCAAACGCTGTCGTACTGCTTGATTAGTGCTCGTGAGTTGTAAATTTGTCGATAGGGTTAATGATTGTGGAATAGAGAAGGATGATGATAACTTCTTAGTAGTGGAAAATTTCTAGGGTTTGTAGAAAACTCGACTTAATTACTAGTTTGGTTTGTTTTTGGAATTAGGTTTATGATTAGATTTCCTAATCATTTTACCCAGTTTAGGTTTAATCCTTGTTTTTCTTCTTCAATTTCAATATAAAATTTAAGTTCGCCTAATTTTGATTATGATTTGCTTTGTCTCATTTCCCCAATATTAC

Coding sequence (CDS)

ATGGCTGCCGCACCTAAAACTGTGAAGAAGGTTACTGCTCCGAAGAAAGCCGCTGCGGCTAAGTCCTCTCCATCTCATCCTCCTTACATCGACATGATTACAGAGGCCTTGGTTTCACTCAAGGAGAGAACCGGATCAAGCCACTACGCAATCGCCAAACACATAGAAGAGCAGCAGAAGGTGAAGGACCTCCCTCCTAACTTCAAGAAGCTTCTGTTCAACCAACTGAAGAAATGCGTCGCATCAGGAAAGCTCGTAATGGTGAAGAAATCCTTCAAACTACCATCTGCCGCGTCGAAGAAGTCTTCATCTCCAGTAGCCGCCCCAGCCGCCGCTGAAAAGGTAAAGGCGAAGCCAAAATCAAAGGAAGTGGCAGAGAAGAAGCCAGCGAAGAAGGAGGCCGCAGCTAAACCTAAGGCTGCGGCAGCGAAACCTAAAGCTGCTGAGAAACCAAAAGCAGCACCGGTGAAGAAACAAAAGGTTGCAGCGAAGTCTCCGGCAAAGAAGGTTGCGCCAGTGAAAGCTAAGAAGTTGAAGAGTATCAAATCGCCGGCGAAGAAAGCTACCGCCGTGAAGAAAACCGTGCCGATGAAGAAGGCTAAGAAGTGA

Protein sequence

MAAAPKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPKSKEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKSIKSPAKKATAVKKTVPMKKAKK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo27245	Spo27245	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo27245.1	Spo27245.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27245.1.utr5p.1	Spo27245.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27245.1.CDS.2	Spo27245.1.CDS.2	CDS
Spo27245.1.CDS.1	Spo27245.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27245.1.utr3p.1	Spo27245.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo27245.1.exon.2	Spo27245.1.exon.2	exon
Spo27245.1.exon.1	Spo27245.1.exon.1	exon

Homology

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BLAST of Spo27245.1 vs. NCBI nr
Match: gi|902153258|gb|KNA05682.1| (hypothetical protein SOVF_187830 [Spinacia oleracea])

HSP 1 Score: 333.2 bits (853), Expect = 3.200e-88
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


		  
Query: 1   MAAAPKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK 60
           MAAAPKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK
Sbjct: 1   MAAAPKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK 60

Query: 61  VKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPK 120
           VKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPK
Sbjct: 61  VKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPK 120

Query: 121 SKEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKS 180
           SKEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKS
Sbjct: 121 SKEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKS 180

Query: 181 IKSPAKKATAVKKTVPMKKAKK 203
           IKSPAKKATAVKKTVPMKKAKK
Sbjct: 181 IKSPAKKATAVKKTVPMKKAKK 202

[Close]

BLAST of Spo27245.1 vs. NCBI nr
Match: gi|731335239|ref|XP_010678630.1| (PREDICTED: histone H1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 197.2 bits (500), Expect = 2.700e-47
Identity = 147/212 (69.34%), Postives = 156/212 (73.58%), Query Frame = 1


		  
Query: 1   MAAAPKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK 60
           +A A K+VKK +A  K  + KS+ SHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK
Sbjct: 3   VAQATKSVKKASANTKKPS-KSTSSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK 62

Query: 61  VKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPK 120
           V+DLP NFKKLLFNQLKK VASGKLVMVKKSFKLPS  SKK  SPV AP A    K KPK
Sbjct: 63  VRDLPSNFKKLLFNQLKKGVASGKLVMVKKSFKLPSGTSKK--SPVTAPVAE---KPKPK 122

Query: 121 SKEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVK------ 180
           SKEVA KKPAK          AAKPK A+K K A VK     AKSPAKK+AP K      
Sbjct: 123 SKEVAAKKPAK-------TVVAAKPKTAKKQKIA-VKVAVKVAKSPAKKIAPAKAKKPKS 182

Query: 181 ----AKKLKSIKSPAKKATAVKKTVPMKKAKK 203
               AKK+KSIKSPAKKATAVKKT  MKK KK
Sbjct: 183 IKSPAKKMKSIKSPAKKATAVKKTTAMKKTKK 200

[Close]

BLAST of Spo27245.1 vs. NCBI nr
Match: gi|720071648|ref|XP_010278122.1| (PREDICTED: histone H1-like [Nelumbo nucifera])

HSP 1 Score: 137.5 bits (345), Expect = 2.600e-29
Identity = 120/215 (55.81%), Postives = 136/215 (63.26%), Query Frame = 1


		  
Query: 2   AAAPKT--VKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQ 61
           A APK    KKV +PKK    ++ PSHPPYI+MI EA+VSLKERTGSS YAI K IE++Q
Sbjct: 37  AKAPKESKAKKVASPKKP---RNPPSHPPYIEMIKEAIVSLKERTGSSQYAITKFIEDKQ 96

Query: 62  KVKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLP-------SAASKKSSSPVAAPAAA 121
           K   LPPNFKKLL   LKK VA+GKLV VK S+KLP        AA K +S+P A   AA
Sbjct: 97  K-SHLPPNFKKLLLFHLKKLVAAGKLVKVKNSYKLPPSRPAAAPAAKKPASAPAAKKPAA 156

Query: 122 EKVKAKPKSKEVAEKKP-AKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVA 181
            K KA  K K  A+ KP AK +AAAKPKAA  KPKAA KPKAA   K+K AAK   K   
Sbjct: 157 AKPKASAKPKAAAKPKPAAKPKAAAKPKAAPVKPKAAAKPKAA--AKRKPAAKPKPKTAR 216

Query: 182 PVKAKKLKSIKSPAKKATAVK----KTVPMKKAKK 203
           P KA K  +  +P KKA A K    K  P K  KK
Sbjct: 217 PAKAAKTSTKSTPGKKAPAAKPAAAKKTPTKNVKK 245

[Close]

BLAST of Spo27245.1 vs. NCBI nr
Match: gi|528065930|emb|CCP19589.1| (histone H1 subtype 7 [Pisum sativum subsp. elatius])

HSP 1 Score: 132.1 bits (331), Expect = 1.100e-27
Identity = 113/192 (58.85%), Postives = 129/192 (67.19%), Query Frame = 1


		  
Query: 12  TAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVKDLPPNFKKL 71
           T PKK AAAK   SHP + +MITEA+ SLKERTGSS YAI K IEE  K KDLPP ++KL
Sbjct: 7   TKPKKTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEE--KHKDLPPTYRKL 66

Query: 72  LFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPKSKEVAEKKPAK 131
           +   LKK VASGKLV VK SFKL  AA+K +S+  +A   A K   KP +K V   KP K
Sbjct: 67  VLLHLKKSVASGKLVKVKSSFKLAPAAAKTASAKTSAATKAPKAVTKPSAKAVT--KP-K 126

Query: 132 KEAAAKPKA-AAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKSIKSPAKKATA 191
            +AA KPKA AAAKPKA  KPKA  VK   V  K+ AKKV     KK KS+KSPAKK  +
Sbjct: 127 AKAAVKPKAKAAAKPKAVAKPKAKSVKATPV-KKAVAKKV----VKKAKSVKSPAKKVKS 186

Query: 192 VKKTVPMKKAKK 203
           VK   P+KKAKK
Sbjct: 187 VK--TPVKKAKK 186

[Close]

BLAST of Spo27245.1 vs. NCBI nr
Match: gi|528066020|emb|CCP19634.1| (histone H1 subtype 7 [Pisum fulvum])

HSP 1 Score: 131.7 bits (330), Expect = 1.400e-27
Identity = 113/192 (58.85%), Postives = 129/192 (67.19%), Query Frame = 1


		  
Query: 12  TAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVKDLPPNFKKL 71
           T PKK AAAK   SHP + +MITEA+ SLKERTGSS YAI K IEE  K KDLPP ++KL
Sbjct: 7   TKPKKTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEE--KHKDLPPTYRKL 66

Query: 72  LFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPKSKEVAEKKPAK 131
           +   LKK VASGKLV VK SFKL  AA+K + +  +A   A K  AKP +K V   KP K
Sbjct: 67  VLLHLKKSVASGKLVKVKSSFKLAPAAAKTAPAKTSAATKAPKAVAKPSTKAVT--KP-K 126

Query: 132 KEAAAKPKA-AAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKSIKSPAKKATA 191
            +AA KPKA AAAKPKA  KPKA  VK   V  K+ AKKV     KK KS+KSPAKK  +
Sbjct: 127 TKAAVKPKAKAAAKPKAVAKPKAKSVKATPV-KKAVAKKV----VKKAKSVKSPAKKVKS 186

Query: 192 VKKTVPMKKAKK 203
           VK   P+KKAKK
Sbjct: 187 VK--TPVKKAKK 186

[Close]

BLAST of Spo27245.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEJ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_187830 PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.200e-88
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


		  
Query: 1   MAAAPKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK 60
           MAAAPKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK
Sbjct: 1   MAAAPKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK 60

Query: 61  VKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPK 120
           VKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPK
Sbjct: 61  VKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPK 120

Query: 121 SKEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKS 180
           SKEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKS
Sbjct: 121 SKEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKS 180

Query: 181 IKSPAKKATAVKKTVPMKKAKK 203
           IKSPAKKATAVKKTVPMKKAKK
Sbjct: 181 IKSPAKKATAVKKTVPMKKAKK 202

[Close]

BLAST of Spo27245.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F3W3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g115670 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.900e-47
Identity = 147/212 (69.34%), Postives = 156/212 (73.58%), Query Frame = 1


		  
Query: 1   MAAAPKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK 60
           +A A K+VKK +A  K  + KS+ SHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK
Sbjct: 3   VAQATKSVKKASANTKKPS-KSTSSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK 62

Query: 61  VKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPK 120
           V+DLP NFKKLLFNQLKK VASGKLVMVKKSFKLPS  SKK  SPV AP A    K KPK
Sbjct: 63  VRDLPSNFKKLLFNQLKKGVASGKLVMVKKSFKLPSGTSKK--SPVTAPVAE---KPKPK 122

Query: 121 SKEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVK------ 180
           SKEVA KKPAK          AAKPK A+K K A VK     AKSPAKK+AP K      
Sbjct: 123 SKEVAAKKPAK-------TVVAAKPKTAKKQKIA-VKVAVKVAKSPAKKIAPAKAKKPKS 182

Query: 181 ----AKKLKSIKSPAKKATAVKKTVPMKKAKK 203
               AKK+KSIKSPAKKATAVKKT  MKK KK
Sbjct: 183 IKSPAKKMKSIKSPAKKATAVKKTTAMKKTKK 200

[Close]

BLAST of Spo27245.1 vs. UniProtKB/TrEMBL
Match: S6CRT3_PEA (Histone H1 subtype 7 OS=Pisum sativum subsp. elatius GN=his7 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.500e-28
Identity = 113/192 (58.85%), Postives = 129/192 (67.19%), Query Frame = 1


		  
Query: 12  TAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVKDLPPNFKKL 71
           T PKK AAAK   SHP + +MITEA+ SLKERTGSS YAI K IEE  K KDLPP ++KL
Sbjct: 7   TKPKKTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEE--KHKDLPPTYRKL 66

Query: 72  LFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPKSKEVAEKKPAK 131
           +   LKK VASGKLV VK SFKL  AA+K +S+  +A   A K   KP +K V   KP K
Sbjct: 67  VLLHLKKSVASGKLVKVKSSFKLAPAAAKTASAKTSAATKAPKAVTKPSAKAVT--KP-K 126

Query: 132 KEAAAKPKA-AAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKSIKSPAKKATA 191
            +AA KPKA AAAKPKA  KPKA  VK   V  K+ AKKV     KK KS+KSPAKK  +
Sbjct: 127 AKAAVKPKAKAAAKPKAVAKPKAKSVKATPV-KKAVAKKV----VKKAKSVKSPAKKVKS 186

Query: 192 VKKTVPMKKAKK 203
           VK   P+KKAKK
Sbjct: 187 VK--TPVKKAKK 186

[Close]

BLAST of Spo27245.1 vs. UniProtKB/TrEMBL
Match: S6CRT4_9FABA (His7 protein OS=Pisum fulvum GN=his7 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.900e-28
Identity = 113/192 (58.85%), Postives = 129/192 (67.19%), Query Frame = 1


		  
Query: 12  TAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVKDLPPNFKKL 71
           T PKK AAAK   SHP + +MITEA+ SLKERTGSS YAI K IEE  K KDLPP ++KL
Sbjct: 7   TKPKKTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEE--KHKDLPPTYRKL 66

Query: 72  LFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPKSKEVAEKKPAK 131
           +   LKK VASGKLV VK SFKL  AA+K + +  +A   A K  AKP +K V   KP K
Sbjct: 67  VLLHLKKSVASGKLVKVKSSFKLAPAAAKTAPAKTSAATKAPKAVAKPSAKAVT--KP-K 126

Query: 132 KEAAAKPKA-AAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKSIKSPAKKATA 191
            +AA KPKA AAAKPKA  KPKA  VK   V  K+ AKKV     KK KS+KSPAKK  +
Sbjct: 127 AKAAVKPKAKAAAKPKAVAKPKAKSVKATPV-KKAVAKKV----VKKAKSVKSPAKKVKS 186

Query: 192 VKKTVPMKKAKK 203
           VK   P+KKAKK
Sbjct: 187 VK--TPVKKAKK 186

[Close]

BLAST of Spo27245.1 vs. UniProtKB/TrEMBL
Match: S6CRT8_PEA (His7 protein OS=Pisum sativum subsp. elatius GN=his7 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.900e-28
Identity = 113/192 (58.85%), Postives = 129/192 (67.19%), Query Frame = 1


		  
Query: 12  TAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVKDLPPNFKKL 71
           T PKK AAAK   SHP + +MITEA+ SLKERTGSS YAI K IEE  K KDLPP ++KL
Sbjct: 7   TKPKKTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEE--KHKDLPPTYRKL 66

Query: 72  LFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPKSKEVAEKKPAK 131
           +   LKK VASGKLV VK SFKL  AA+K + +  +A   A K  AKP +K V   KP K
Sbjct: 67  VLLHLKKSVASGKLVKVKSSFKLAPAAAKTAPAKTSAATKAPKAVAKPSAKAVT--KP-K 126

Query: 132 KEAAAKPKA-AAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKSIKSPAKKATA 191
            +AA KPKA AAAKPKA  KPKA  VK   V  K+ AKKV     KK KS+KSPAKK  +
Sbjct: 127 AKAAVKPKAKAAAKPKAVAKPKAKSVKATPV-KKAVAKKV----VKKAKSVKSPAKKVKS 186

Query: 192 VKKTVPMKKAKK 203
           VK   P+KKAKK
Sbjct: 187 VK--TPVKKAKK 186

[Close]

BLAST of Spo27245.1 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 1.700e-25
Identity = 109/204 (53.43%), Postives = 127/204 (62.25%), Query Frame = 1


		  
Query: 9   KKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVKDLPPNF 68
           KK TAPKK A    SP+H PY +M++EA+ SLKERTGSS YAIAK +E++ K K LPPNF
Sbjct: 37  KKATAPKKRA----SPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAK-LPPNF 96

Query: 69  KKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAP------AAAEKVKAKPKSK 128
           +KLL  QLKK VA GKL  VK S+KL S+A+K +  P AAP      A   K  AKPK+K
Sbjct: 97  RKLLNVQLKKLVAGGKLTKVKNSYKL-SSATKPNPKPKAAPKKPKTGAKKPKAAAKPKAK 156

Query: 129 EVAEKKPAKK-EAAAKPKAAAAKPKAAEKPKAAPVKKQK--VAAKSP---AKKVAPVKAK 188
             A+ KPA K + AAKPKA   KPK   KPKA P  K K   A   P   AKK    KA 
Sbjct: 157 TPAKAKPATKPKPAAKPKAVV-KPKTPAKPKAKPAAKAKPKTAGAKPKPLAKKAGRAKAA 216

Query: 189 KLKSIKSPAKKATAVKKTVPMKKA 201
           K  +  +P KKA A KK  P KKA
Sbjct: 217 KTSAKDTPGKKAPA-KKAAPSKKA 232

[Close]

BLAST of Spo27245.1 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.700e-23
Identity = 113/224 (50.45%), Postives = 132/224 (58.93%), Query Frame = 1


		  
Query: 2   AAAPKTVK-KVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQK 61
           A   KT K K + PKKA+  ++  SHP Y +MI +A+VSLKE+ GSS YAIAK IEE+QK
Sbjct: 37  AEVEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK 96

Query: 62  VKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASK----KSSSPVAAPAAAEKVK 121
              LP NFKKLL   LKK VASGKL+ VK SFKL +AA K    K  +  AA A + K K
Sbjct: 97  --QLPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAAKKPAVAKPKAKTAAKAKSVKAK 156

Query: 122 --AKPKSKEVAEKKPAKKE--AAAKPKAAAAKPKA--------AEKPKA-----APVKKQ 181
             AKPK+K V + K A K    AAKPK AAAKPK         A KPKA     + VK  
Sbjct: 157 PAAKPKAKAVVKPKVASKAKAVAAKPKKAAAKPKTVAAKTKPTAAKPKAVVKPKSKVKPA 216

Query: 182 KVAAKS----PAKKVA----------PVKAKKLKSIKSPAKKAT 190
           KVA  S    P KKVA          PVK+ K KS+KSP KK +
Sbjct: 217 KVAKTSVKTTPGKKVAAVKKVAAKKVPVKSVKAKSVKSPVKKVS 258

[Close]

BLAST of Spo27245.1 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.000e-22
Identity = 105/214 (49.07%), Postives = 124/214 (57.94%), Query Frame = 1


		  
Query: 6   KTVKKVTAPKKAAAA---KSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVK 65
           K VK+V   K  AAA   ++  SHP Y +MI +A+V+LKERTGSS YAI K IEE++K  
Sbjct: 39  KNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-- 98

Query: 66  DLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPKS- 125
           +LPP F+KLL   LK+ VASGKLV VK SFKLPS AS K+SSP AA   +   K KP + 
Sbjct: 99  ELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPS-ASAKASSPKAAAEKSAPAKKKPATV 158

Query: 126 ------KEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPV-------KKQKVAAKSPAK 185
                 ++VA    AKK  A KPK AAAK K   K KA PV        K+K     P  
Sbjct: 159 AVTKAKRKVAAASKAKKTIAVKPKTAAAK-KVTAKAKAKPVPRATAAATKRKAVDAKPKA 218

Query: 186 KVAPVKAKKLKSIKSPAKKATAVKKTVPMKKAKK 203
           K  P KA K   + SPAKKA A  K V     KK
Sbjct: 219 KARPAKAAKTAKVTSPAKKAVAATKKVATVATKK 248

[Close]

BLAST of Spo27245.1 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.000e-22
Identity = 119/243 (48.97%), Postives = 136/243 (55.97%), Query Frame = 1


		  
Query: 2   AAAPKTVKKVTAPKKAAAAKSS--PSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQ 61
           A + K  K+  A K AA  K S  P+HPPY +MI +A+V+LKERTGSS +AI K IEE+Q
Sbjct: 30  AKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQ 89

Query: 62  KVKDLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSA---------ASKK----SSSPV 121
           K   LP NFKKLL  QLKK VAS KLV VK S+KLPS          A KK     S P 
Sbjct: 90  K--SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSGSKPAAAAVPAKKKPAAAKSKPA 149

Query: 122 AAPAAAEKVKAKP--KSKEVAEKKPAKKE---------------------AAAKPKAAAA 181
           A P AA K KAKP  K+K  A+ KPA K                      A AKPKAAAA
Sbjct: 150 AKPKAAVKPKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAA 209

Query: 182 -KPKAAEKPKAAPVK-----KQKVAAKSPAKKVAPVKAKKLKSIKSPAKKATAVKKTVPM 201
            KPKAA KPKAAP K     K  + AK+   KVA    +   S K+ A KAT  KK  P+
Sbjct: 210 AKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSRKA-APKATPAKKE-PV 268

[Close]

BLAST of Spo27245.1 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.200e-21
Identity = 100/201 (49.75%), Postives = 122/201 (60.70%), Query Frame = 1


		  
Query: 5   PKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVKDL 64
           PK  KKV A KK  + K + SHP + +MI++A+ +LKERTGSS YAI K +E+  K K L
Sbjct: 31  PKEKKKVIAAKKPKS-KGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVED--KHKQL 90

Query: 65  PPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAE-KVKAKPKSKE 124
           P NF+KLL   LKK VASGKLV VK SFKLPSA +  + +    P   + KV AKPK+ +
Sbjct: 91  PSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSARAAPAPALAKKPTIPKPKVAAKPKTAK 150

Query: 125 VAEKKPAKKEAAAKPKAA---------AAKPKA--AEKPKAAPVKKQKV----AAKSPAK 184
           +  K  AK + AAK KA          AAKPKA  A KPK    K  KV    A  SP K
Sbjct: 151 IGAKPKAKAKVAAKTKATTKTVAKKIPAAKPKAKTAGKPKTVAAKPAKVAKTAAVASPGK 210

Query: 185 KVAPVKAKKLKSIKSPAKKAT 190
           K A V  KK+K++KSPA K T
Sbjct: 211 KKA-VPVKKVKTVKSPAGKRT 227

[Close]

BLAST of Spo27245.1 vs. TAIR (Arabidopsis)
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 108.2 bits (269), Expect = 5.900e-24
Identity = 105/214 (49.07%), Postives = 124/214 (57.94%), Query Frame = 1


		  
Query: 6   KTVKKVTAPKKAAAA---KSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVK 65
           K VK+V   K  AAA   ++  SHP Y +MI +A+V+LKERTGSS YAI K IEE++K  
Sbjct: 39  KNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-- 98

Query: 66  DLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPKS- 125
           +LPP F+KLL   LK+ VASGKLV VK SFKLPS AS K+SSP AA   +   K KP + 
Sbjct: 99  ELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPS-ASAKASSPKAAAEKSAPAKKKPATV 158

Query: 126 ------KEVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPV-------KKQKVAAKSPAK 185
                 ++VA    AKK  A KPK AAAK K   K KA PV        K+K     P  
Sbjct: 159 AVTKAKRKVAAASKAKKTIAVKPKTAAAK-KVTAKAKAKPVPRATAAATKRKAVDAKPKA 218

Query: 186 KVAPVKAKKLKSIKSPAKKATAVKKTVPMKKAKK 203
           K  P KA K   + SPAKKA A  K V     KK
Sbjct: 219 KARPAKAAKTAKVTSPAKKAVAATKKVATVATKK 248

[Close]

BLAST of Spo27245.1 vs. TAIR (Arabidopsis)
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 97.1 bits (240), Expect = 1.400e-20
Identity = 103/213 (48.36%), Postives = 118/213 (55.40%), Query Frame = 1


		  
Query: 7   TVKKVTAPKKAAAA---KSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVKD 66
           T K    P KAAA    K++ SHP Y +MI +A+V+LKERTGSS YAI K IEE  K K 
Sbjct: 40  TAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEE--KHKS 99

Query: 67  LPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPKSKE 126
           LPP F+KLL   LK+ VAS KLV VK SFK+PSA S  +  P A       V AKPK K 
Sbjct: 100 LPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKKATVVAKPKGKV 159

Query: 127 VAEKKPAKKEAAAK--PKAAA---AKPKAAEKPK----AAPVKKQKVAAKSPAKKVA--- 186
            A   PAK +AAAK   K AA   AK K   KPK    AA  K + VAA S  K VA   
Sbjct: 160 AAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKP 219

Query: 187 -----PVKAKKLKSIKSPAKKATAVKKTVPMKK 200
                P KA +  +  SP KK  A  K V + K
Sbjct: 220 KAKERPAKASRTSTRTSPGKKVAAPAKKVAVTK 250

[Close]

BLAST of Spo27245.1 vs. TAIR (Arabidopsis)
Match: AT2G18050.1 (histone H1-3)

HSP 1 Score: 58.5 bits (140), Expect = 5.400e-9
Identity = 71/190 (37.37%), Postives = 96/190 (50.53%), Query Frame = 1


		  
Query: 3   AAPKTVKKVTAPKKAAAAKSSPSHPPYIDMITEALVSLKERTGSSHYAIAKHIEEQQKVK 62
           A  K +KK  A KK    K++ +HPPY  MI EAL+ LKE+ GSS YAIAK IEE+ K  
Sbjct: 2   AEDKILKKTPAAKKPRKPKTT-THPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHK-S 61

Query: 63  DLPPNFKKLLFNQLKKCVASGKLVMVKKSFKLPSAASKKSSSPVAAPAAAEKVKAKPKSK 122
            LP +F+K L  QLK  VA GKLV ++ S+KL                  + +  +   K
Sbjct: 62  LLPESFRKTLSLQLKNSVAKGKLVKIRASYKLSD--------------TTKMITRQQDKK 121

Query: 123 EVAEKKPAKKEAAAKPKAAAAKPKAAEKPKAAPVKKQKVAAKSPAKKVAPVKAKKLKSIK 182
                K   KE   + ++++ +PK     K   V KQ+       KK    KA++ KSIK
Sbjct: 122 NKKNMKQEDKEITKRTRSSSTRPK-----KTVSVNKQE-------KKRKVKKARQPKSIK 163

Query: 183 SPAKKATAVK 193
           S   K  A+K
Sbjct: 182 SSVGKKKAMK 163

The following BLAST results are available for this feature:

BLAST of Spo27245.1 vs. NCBI nr
BLAST of Spo27245.1 vs. UniProtKB/TrEMBL
BLAST of Spo27245.1 vs. ExPASy Swiss-Prot
BLAST of Spo27245.1 vs. TAIR (Arabidopsis)

BLAST of Spo27245.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902153258\|gb\|KNA05682.1\|	3.2e-88	100.	hypothetical protein SOVF_1878...	[more]
gi\|731335239\|ref\|XP_010678630.1\|	2.7e-47	69.3	PREDICTED: histone H1-like [Be...	[more]
gi\|720071648\|ref\|XP_010278122.1\|	2.6e-29	55.8	PREDICTED: histone H1-like [Ne...	[more]
gi\|528065930\|emb\|CCP19589.1\|	1.1e-27	58.8	histone H1 subtype 7 [Pisum sa...	[more]
gi\|528066020\|emb\|CCP19634.1\|	1.4e-27	58.8	histone H1 subtype 7 [Pisum fu...	[more]

BLAST of Spo27245.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QEJ4_SPIOL	2.2e-88	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8F3W3_BETVU	1.9e-47	69.3	Uncharacterized protein OS=Bet...	[more]
S6CRT3_PEA	7.5e-28	58.8	Histone H1 subtype 7 OS=Pisum ...	[more]
S6CRT4_9FABA	9.9e-28	58.8	His7 protein OS=Pisum fulvum G...	[more]
S6CRT8_PEA	9.9e-28	58.8	His7 protein OS=Pisum sativum ...	[more]

BLAST of Spo27245.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
H1_MAIZE	1.7e-25	53.4	Histone H1 OS=Zea mays PE=2 SV...	[more]
H1_PEA	4.7e-23	50.4	Histone H1 OS=Pisum sativum PE...	[more]
H11_ARATH	1.0e-22	49.0	Histone H1.1 OS=Arabidopsis th...	[more]
H1_SOLLC	1.0e-22	48.9	Histone H1 OS=Solanum lycopers...	[more]
H1_EUPES	1.2e-21	49.7	Histone H1 OS=Euphorbia esula ...	[more]

BLAST of Spo27245.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G06760.1	5.9e-24	49.0	winged-helix DNA-binding trans...	[more]
AT2G30620.1	1.4e-20	48.3	winged-helix DNA-binding trans...	[more]
AT2G18050.1	5.4e-9	37.3	histone H1-3	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 26..94 score: 3.4
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 23..91 score: 1.2
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 25..96 score: 31
IPR005819	Histone H5	PRINTS	PR00624	HISTONEH5	coord: 39..56 score: 5.8E-14coord: 173..192 score: 5.8E-14coord: 121..135 score: 5.8E-14coord: 12..33 score: 5.8E-14coord: 151..168 score: 5.8
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 21..101 score: 4.3
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 22..103 score: 1.8
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 2..200 score: 2.0
None	No IPR available	PANTHER	PTHR11467:SF48	HISTONE H1.1-RELATED	coord: 2..200 score: 2.0

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding