Spo24343.1 (mRNA)

Overview
NameSpo24343.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionZinc finger CCCH domain-containing protein 39
LocationSpoScf_01702 : 95702 .. 99831 (-)
Sequence length765
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACAACCAGAAGCTTCGAGTTGCCCTAATTAGAAGAAATCGTTCAGCGATTCTGCTTAATTCAAGTTTCCCAGGTAATTACACTTTCTCTAGGTAATTCAATTTTTGTTTTAGTTTAATTTTGATTTAAAATTCAAGTTCATATAAGTTTAGAAGACCAGGACAATCTAAATTAAGTAAATTGGATAGGATAATGGCGTAAATTAAGATAATGAACCGTTAGGGTTTAAGGGCTTTAGGGTTTTTCCTTTTATCTTTCCACCTTTTTCTCTGCAATTTTCCCTTTGTTAAATTCTAGAGGAAGGCTGCTAGGGTTTTCAATTTGGGGTTCCCATATTTCGTCCAATATATATTCTACCCACTACTATCCATGTTCTGTTTTCACTAATCTGGAGATTTATATATATTAATCATCTCTCAATTAATTCAATTATTCAATTCTTTGANTTTCACTAATCTGGAGATTTATATATATTAATCATCTCTCAATTAATTCAATTATTCAATTCTTTGATTCCCTCTTATCAAATCTTCGTTGTAATTTCCGAATTCTTTGATTTTGTCCCCTTTAATTTAGGATTTGGTTGGTTTTAATTAGTGGGTATATAAGAAAGTTTGAATCTTTAGTTAATTTTGATCTGGGTTTGTTGAGATTGATTGATTTTGCATCTCAAATTTCAACAGGATGAGTTTCTCTGATTCTTTTTTTCATCGTTTGCACCTTTCTCTAATGGGGTAGATTCAATGGGAGAATTCTAGGGAGATCTCTGCAATCAGCATTGGTACTACAGGGCCTCCTATGGTGCAGCAACCTAGGGCTCCTGATCAATATGATGTTCATAGGATGGCGGAGAATGGTAATGGTGTTATGGATGTTATGAGAGGGAATTCAAGGCCGGTTTATTGGAAAACAAAGCTCTATACCAAGTTTGAAACAACAGAGTTCTGTCCTTTTGGGGACAATTGCCATTTTGCTCATGGGCATGCAGGTATGTATCATGACAAACTTGTAGTAATTGTCTCAATAAAACCTTATTACTATACTAATTTATGATCTTGTTACAATTTGTTGTTTTCAATATGTTGTTGAGAATTGATATCTGTCATTTGCTCTTGATCAATTGTTGATGATATGTTAAATGTGTTTAAATCATAGATGTCTCATATGGTAAGAAGGTGGAGTGTTGGGTTATCAGGATCTCTGTGGGGTTTATCTTGTGCAAATTAGGTCAATTGTTTCCTTTGGTATTCCTCTATGGAGCTACGACAGACTTATGAGAATGGCATTGGATAGCTTTTGTTATTTATTTTCATTAGTCCTGCTTGCCTAACTAAAGAACATGTCAGCGACCTTAGGGTCGATTATTGATTCGGTTACATTTGTGATTATACATTTATACTTACTTGCTCATGAGCAAAATGGCAATTTTCCATTTTAGGAACAACATAAAAGGTAAGAAATTTATGATTTGAGAAACATTTTAAAGACACGTATTCTATGATCCGATTCGTAACTAGTAAGTCATACGTAATGTACCTTTTATGCCGGGAGGTTTTAGCGGGTTAATTGGTGAATCATTCAATCATTATCTATTGATTGTGGAAGTAGAATTTTGTTGTCAATCAATGATTACAACTCAAGTTCATTAGTTAAAAGTTGGGGCCGAAATAAGCTATTTTAGTCAAAATGTGACTGATAATGAACTAACGAGGCTTAAATGTGCATAACATCACCAAAATGGGTGAGAATGAGTCTTTGAAACATAAAACATAGTGTATCAAACATGAAAATACTTTAAAATACTCAGTTAAGTTCCTTAGTTGAAAGTTGGGACCGAAATTAGCCATTTTAGTCAAAATGTGACCGATAATGAACTACGAGGCTTAAATGTGCATAACTTCACTAAATGGGTGAGAATTAGTCTTTGAAACATAAAACTAAGTGTATTAAACATGGAAGGACTTTAAAATACTCATTTAAGTTCATTAAATGAAAGTTGGGACCGAAATTACCAATTTTATTATTATACAGTTCATTATTTCTTTGTTATGAACAAATTAAGTCTTAATTTATTGTACGATTCAATGTTTATAATATAACTAAAGTGTATATATATTTTTTAATGGTCGATCTTTTTAAGGTATTCAATAATCCGAGGGAGCAGCCTTTCACCTTTGAGGAGATAGATGAAGTACGAGGAGATAGATGAAGTTTGAGGAGATAGATGAAGTTCGAGGGAGCGGCATTTCACCCGTGGTTGTCTTTGATATTTTCTTGTACTGAATCTTAAATTATGGATGCTAGTTATTCGTATGATTGTAATGTAATCGACTTTTATATTTACAATTATATACTACTTTATTTAATTATCTATATAATTGGATACTTTTCATGTGACGTATGGAGGTTAATCAGTGGCGTGGTCCAATTATAATATGTAGCAGAGAAATCGGTTATATAACAAATCTAGATTAAGTGCGGCTCATTTATAGGCCAAATGCGGCTCATTTATAAACCAAGTGCGGCTCATTTATATATCAAGTGCGGCTCATTTTCATGCTTGTGCTGCCCATTTCTATGTCAAGTGCGGGCTCACTTTCAAATTTGGCAGCACCAAATATGTCAAGTGCGGGCTCATTTTCAAAATTGGCAGCACCAAATATGTCAAGTGCGGGCTCATATTCTAAAATTGGCAGCACAAAATATGTCAAGTGCGGGCTCATTTTCCAAATTGGCAGCACTTCATCAAGTGCGGGCAGGCCATGTGCTGCACATGTAAAAGCCGCCATTAAACCCCTTAAACTGAGCCCGCACTTGAGGTTTTTTCTTCTAGTGGATACTTATTGGATCTTGTATCTGATTGACCATGAGAACACTTTAAGAGATTAAAGTCATGTCATAGGCAGTTCTCATTAATGGTGATTAGAACCATTCCTCAGAACATGAGCGATTATGTCTGCTCGTTTGAGAATTAGTTCGCTTTGATGCTAGCTAAACGTCGCACCGTAAAAGGAGGCTATAAAAGAAGTTATTGGGCGGACTATGAATCAAAGTGAGTGTTCATAGATTGCAAGAATGGATTTTCCTCCTATCTTGGATAGGATATGGTGTTGTTGTGTAACAAGGCCTCTCGGAGAGTTAGATAATGTAAAATGTATGGCCGTGCTCAGAATGGTTAAGGCTTAACCTTCTGTAAAAGTTTAACAGTTGAGCTCTGTAATCCGAGAAACACTTCTGGACCTAATAAGGATGGCTTGGATCTTACCTTATGTTCAGTAAGTAAAACTAAGTGACAAAGGAATGTGAATGCACACTTGTATGAATGACAAGTGGGAGACTGAAGGAAATATGTCCTTCACCCAAGGTGCATTAAGTCTAATACCAAGGTTCAGATTAATTGCGAACAATTATTTCAGTGAGATCAAGTGATTGGAACAGCTAGCTGGAGCAATGCTTCCGATCAGTGAGTTCTAATGAATATTAAGCTCACAACTTACTCTTGACTGGACCTACAAGGTCACACCAATGGCACGTAATAGATCACCGGATTAAATGAATCGGAAATTCATTTAATAGCTTTTCGGGAATTAGTTTTGGAAAAAGTATTATACGATACGATCTTGCATCAGAATCGTATATCGTGTTGGGTATATTCGTAAGCTAGGTGAAACGAATTATCGTATCGTACGACGTTGGATCGTCAAGTACGACACAATAAATAAATTATCGAGAGACAATTTTAGACGCAATAGAAAGAGCAGCCCACGAGCCGAATGCACGAAGCATTGGAGGCCTATGGGCGCATGCTGCGCAACAACATAGCACAGCAGCACTGGCCCAAAGCCAAGCGGCTGCGTGTGCGCGCGGGCCAAAGGCGTCAACGCAGCAGCAGCAGCGCGCGGCCCATGGCCCAGCTGGCTACGTGCTTGCTTGTCGATTGCCGTGTGGGCTTGCTAGCCAGTCATGGCCTTTTGGCTTGGCCGGTTGGTTGTTAGGTTATTCTAATAACCTATACACTTGTGTTTTCCAGACAACTAATCACTCTTTAACCCTAGACACTCAGAGAACCCTAATTCTCTCTGTGCCTCCAAAAGTTAGTTCTTCCCAAAAAGCAAAAACTCTTGATTGA

mRNA sequence

ACACAACCAGAAGCTTCGAGTTGCCCTAATTAGAAGAAATCGTTCAGCGATTCTGCTTAATTCAAGTTTCCCAGGATGAGTTTCTCTGATTCTTTTTTTCATCGTTTGCACCTTTCTCTAATGGGGTAGATTCAATGGGAGAATTCTAGGGAGATCTCTGCAATCAGCATTGGTACTACAGGGCCTCCTATGGTGCAGCAACCTAGGGCTCCTGATCAATATGATGTTCATAGGATGGCGGAGAATGGTAATGGTGTTATGGATGTTATGAGAGGGAATTCAAGGCCGGTTTATTGGAAAACAAAGCTCTATACCAAGTTTGAAACAACAGAGTTCTGTCCTTTTGGGGACAATTGCCATTTTGCTCATGGGCATGCAGACGCAATAGAAAGAGCAGCCCACGAGCCGAATGCACGAAGCATTGGAGGCCTATGGGCGCATGCTGCGCAACAACATAGCACAGCAGCACTGGCCCAAAGCCAAGCGGCTGCGTGTGCGCGCGGGCCAAAGGCGTCAACGCAGCAGCAGCAGCGCGCGGCCCATGGCCCAGCTGGCTACGTGCTTGCTTGTCGATTGCCGTGTGGGCTTGCTAGCCAGTCATGGCCTTTTGGCTTGGCCGGTTGGTTGTTAGGTTATTCTAATAACCTATACACTTGTGTTTTCCAGACAACTAATCACTCTTTAACCCTAGACACTCAGAGAACCCTAATTCTCTCTGTGCCTCCAAAAGTTAGTTCTTCCCAAAAAGCAAAAACTCTTGATTGA

Coding sequence (CDS)

ATGGTGCAGCAACCTAGGGCTCCTGATCAATATGATGTTCATAGGATGGCGGAGAATGGTAATGGTGTTATGGATGTTATGAGAGGGAATTCAAGGCCGGTTTATTGGAAAACAAAGCTCTATACCAAGTTTGAAACAACAGAGTTCTGTCCTTTTGGGGACAATTGCCATTTTGCTCATGGGCATGCAGACGCAATAGAAAGAGCAGCCCACGAGCCGAATGCACGAAGCATTGGAGGCCTATGGGCGCATGCTGCGCAACAACATAGCACAGCAGCACTGGCCCAAAGCCAAGCGGCTGCGTGTGCGCGCGGGCCAAAGGCGTCAACGCAGCAGCAGCAGCGCGCGGCCCATGGCCCAGCTGGCTACGTGCTTGCTTGTCGATTGCCGTGTGGGCTTGCTAGCCAGTCATGGCCTTTTGGCTTGGCCGGTTGGTTGTTAGGTTATTCTAATAACCTATACACTTGTGTTTTCCAGACAACTAATCACTCTTTAACCCTAGACACTCAGAGAACCCTAATTCTCTCTGTGCCTCCAAAAGTTAGTTCTTCCCAAAAAGCAAAAACTCTTGATTGA

Protein sequence

MVQQPRAPDQYDVHRMAENGNGVMDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHGHADAIERAAHEPNARSIGGLWAHAAQQHSTAALAQSQAAACARGPKASTQQQQRAAHGPAGYVLACRLPCGLASQSWPFGLAGWLLGYSNNLYTCVFQTTNHSLTLDTQRTLILSVPPKVSSSQKAKTLD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24343Spo24343gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24343.1Spo24343.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24343.1.utr5p.2Spo24343.1.utr5p.2five_prime_UTR
Spo24343.1.utr5p.1Spo24343.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24343.1.CDS.2Spo24343.1.CDS.2CDS
Spo24343.1.CDS.1Spo24343.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24343.1.exon.3Spo24343.1.exon.3exon
Spo24343.1.exon.2Spo24343.1.exon.2exon
Spo24343.1.exon.1Spo24343.1.exon.1exon


Homology
[Close]
BLAST of Spo24343.1 vs. NCBI nr
Match: gi|902197667|gb|KNA13492.1| (hypothetical protein SOVF_116470, partial [Spinacia oleracea])

HSP 1 Score: 132.9 bits (333), Expect = 6.000e-28
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1 

		  

Query: 1   MVQQPRAPDQYDVHRMAENGNGVMDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAH 60
           MVQQPRAPDQYDVHRMA NGNG MDVMRGNS+PVYWKTKL TKFETT  CPFGDNCHFAH
Sbjct: 202 MVQQPRAPDQYDVHRMAANGNGGMDVMRGNSKPVYWKTKLCTKFETTGLCPFGDNCHFAH 261

Query: 61  GHADAIERAAHEPNARS 78
           GHA+ +    H  +A +
Sbjct: 262 GHAELLLPRGHPADAET 278
[Close]
BLAST of Spo24343.1 vs. NCBI nr
Match: gi|731331452|ref|XP_010676669.1| (PREDICTED: zinc finger CCCH domain-containing protein 39 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 94.4 bits (233), Expect = 2.400e-16
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 1 

		  

Query: 4   QPRAPDQYDVHRMAENGNGV--MDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHG 63
           Q R  DQ++V+RM  N NG+  +D  RGNSRPVYWKTKL TKFE T  CPFGDNCHFAHG
Sbjct: 198 QARVNDQFEVNRMPGNANGIAAVDASRGNSRPVYWKTKLCTKFEITGHCPFGDNCHFAHG 257

Query: 64  HADAI 67
            A+ +
Sbjct: 258 QAELL 262
[Close]
BLAST of Spo24343.1 vs. NCBI nr
Match: gi|590577936|ref|XP_007013371.1| (Zinc finger family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 70.9 bits (172), Expect = 2.800e-9
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 

		  

Query: 7   APDQYDVHRMAENGNGVMDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHGHAD 65
           A DQ + +R   + +   D  RGN +PVYWKTKL TK+ETT  CPFG+ CHFAHG ++
Sbjct: 203 ASDQSEGNRPLNSASS--DAFRGNMKPVYWKTKLCTKWETTGHCPFGEKCHFAHGQSE 258
[Close]
BLAST of Spo24343.1 vs. NCBI nr
Match: gi|255566953|ref|XP_002524459.1| (PREDICTED: zinc finger CCCH domain-containing protein 39 [Ricinus communis])

HSP 1 Score: 70.5 bits (171), Expect = 3.700e-9
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 1 

		  

Query: 21  NGVMDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHGHADAIERAAHEPNARSIG 80
           N   D  RGN +PVYWKTKL TK+ETT  CPFG+ CHFAHG A+        PN R+ G
Sbjct: 215 NAGADAYRGNMKPVYWKTKLCTKWETTGQCPFGEKCHFAHGQAE-----LQIPNGRAEG 268
[Close]
BLAST of Spo24343.1 vs. NCBI nr
Match: gi|703068812|ref|XP_010088337.1| (Zinc finger CCCH domain-containing protein 39 [Morus notabilis])

HSP 1 Score: 68.6 bits (166), Expect = 1.400e-8
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1 

		  

Query: 21  NGVMDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHGHADAIERAAHEPNARS 78
           N   D +RGN +PVYWKTKL  K+E T  CPFG+ CHFAHG AD  + A H+  A S
Sbjct: 210 NAGSDPLRGNVKPVYWKTKLCNKWEQTGHCPFGEKCHFAHGLADT-QSALHKLQASS 265
[Close]
BLAST of Spo24343.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3T9_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_116470 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.200e-28
Identity = 59/77 (76.62%), Postives = 64/77 (83.12%), Query Frame = 1 

		  

Query: 1   MVQQPRAPDQYDVHRMAENGNGVMDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAH 60
           MVQQPRAPDQYDVHRMA NGNG MDVMRGNS+PVYWKTKL TKFETT  CPFGDNCHFAH
Sbjct: 202 MVQQPRAPDQYDVHRMAANGNGGMDVMRGNSKPVYWKTKLCTKFETTGLCPFGDNCHFAH 261

Query: 61  GHADAIERAAHEPNARS 78
           GHA+ +    H  +A +
Sbjct: 262 GHAELLLPRGHPADAET 278
[Close]
BLAST of Spo24343.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F8K7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g102030 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.600e-16
Identity = 42/65 (64.62%), Postives = 49/65 (75.38%), Query Frame = 1 

		  

Query: 4   QPRAPDQYDVHRMAENGNGV--MDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHG 63
           Q R  DQ++V+RM  N NG+  +D  RGNSRPVYWKTKL TKFE T  CPFGDNCHFAHG
Sbjct: 198 QARVNDQFEVNRMPGNANGIAAVDASRGNSRPVYWKTKLCTKFEITGHCPFGDNCHFAHG 257

Query: 64  HADAI 67
            A+ +
Sbjct: 258 QAELL 262
[Close]
BLAST of Spo24343.1 vs. UniProtKB/TrEMBL
Match: A0A061GN87_THECC (Zinc finger family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_038030 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.000e-9
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 

		  

Query: 7   APDQYDVHRMAENGNGVMDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHGHAD 65
           A DQ + +R   + +   D  RGN +PVYWKTKL TK+ETT  CPFG+ CHFAHG ++
Sbjct: 203 ASDQSEGNRPLNSASS--DAFRGNMKPVYWKTKLCTKWETTGHCPFGEKCHFAHGQSE 258
[Close]
BLAST of Spo24343.1 vs. UniProtKB/TrEMBL
Match: B9SEP0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0221060 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.500e-9
Identity = 33/59 (55.93%), Postives = 38/59 (64.41%), Query Frame = 1 

		  

Query: 21  NGVMDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHGHADAIERAAHEPNARSIG 80
           N   D  RGN +PVYWKTKL TK+ETT  CPFG+ CHFAHG A+        PN R+ G
Sbjct: 215 NAGADAYRGNMKPVYWKTKLCTKWETTGQCPFGEKCHFAHGQAE-----LQIPNGRAEG 268
[Close]
BLAST of Spo24343.1 vs. UniProtKB/TrEMBL
Match: W9QMQ1_9ROSA (Zinc finger CCCH domain-containing protein 39 OS=Morus notabilis GN=L484_005852 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.700e-9
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1 

		  

Query: 21  NGVMDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHGHADAIERAAHEPNARS 78
           N   D +RGN +PVYWKTKL  K+E T  CPFG+ CHFAHG AD  + A H+  A S
Sbjct: 210 NAGSDPLRGNVKPVYWKTKLCNKWEQTGHCPFGEKCHFAHGLADT-QSALHKLQASS 265
[Close]
BLAST of Spo24343.1 vs. ExPASy Swiss-Prot
Match: C3H39_ARATH (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.000e-6
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1 

		  

Query: 29  GNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHGHAD 65
           G  + VYWKT+L  KF+ T  CPFGD CHFAHG A+
Sbjct: 263 GVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAE 298
[Close]
BLAST of Spo24343.1 vs. ExPASy Swiss-Prot
Match: C3H56_ORYSJ (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.400e-6
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 1 

		  

Query: 17  AENGNGVMDVMRGNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHGHAD 65
           A  GNG M       +P  WKT++  K+E T +CPFG  CHFAHG A+
Sbjct: 233 AAAGNGPMQ------KPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAE 274
[Close]
BLAST of Spo24343.1 vs. TAIR (Arabidopsis)
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 55.1 bits (131), Expect = 5.600e-8
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1 

		  

Query: 29  GNSRPVYWKTKLYTKFETTEFCPFGDNCHFAHGHAD 65
           G  + VYWKT+L  KF+ T  CPFGD CHFAHG A+
Sbjct: 263 GVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAE 298
[Close]
BLAST of Spo24343.1 vs. TAIR (Arabidopsis)
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 48.9 bits (115), Expect = 4.000e-6
Identity = 18/33 (54.55%), Postives = 24/33 (72.73%), Query Frame = 1 

		  

Query: 32  RPVYWKTKLYTKFETTEFCPFGDNCHFAHGHAD 65
           +P  WKT++  K+E T +CPFG  CHFAHG A+
Sbjct: 257 KPSNWKTRICNKWEITGYCPFGAKCHFAHGAAE 289
[Close]
BLAST of Spo24343.1 vs. TAIR (Arabidopsis)
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 48.1 bits (113), Expect = 6.900e-6
Identity = 16/29 (55.17%), Postives = 24/29 (82.76%), Query Frame = 1 

		  

Query: 36  WKTKLYTKFETTEFCPFGDNCHFAHGHAD 65
           WKT++  K++TT +CPFG +CHFAHG ++
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSE 172
The following BLAST results are available for this feature:
BLAST of Spo24343.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902197667|gb|KNA13492.1|6.0e-2876.6hypothetical protein SOVF_1164... [more]
gi|731331452|ref|XP_010676669.1|2.4e-1664.6PREDICTED: zinc finger CCCH do... [more]
gi|590577936|ref|XP_007013371.1|2.8e-953.4Zinc finger family protein, pu... [more]
gi|255566953|ref|XP_002524459.1|3.7e-955.9PREDICTED: zinc finger CCCH do... [more]
gi|703068812|ref|XP_010088337.1|1.4e-856.1Zinc finger CCCH domain-contai... [more]
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BLAST of Spo24343.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R3T9_SPIOL4.2e-2876.6Uncharacterized protein (Fragm... [more]
A0A0J8F8K7_BETVU1.6e-1664.6Uncharacterized protein OS=Bet... [more]
A0A061GN87_THECC2.0e-953.4Zinc finger family protein, pu... [more]
B9SEP0_RICCO2.5e-955.9Putative uncharacterized prote... [more]
W9QMQ1_9ROSA9.7e-956.1Zinc finger CCCH domain-contai... [more]
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BLAST of Spo24343.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C3H39_ARATH1.0e-661.1Zinc finger CCCH domain-contai... [more]
C3H56_ORYSJ8.4e-647.9Zinc finger CCCH domain-contai... [more]
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BLAST of Spo24343.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G19360.15.6e-861.1Zinc finger (CCCH-type) family... [more]
AT1G32360.14.0e-654.5Zinc finger (CCCH-type) family... [more]
AT2G35430.16.9e-655.1Zinc finger C-x8-C-x5-C-x3-H t... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeGENE3D4.10.1000.10coord: 32..64
score: 3.1
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 44..61
score: 2.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 35..63
score: 10
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 34..64
score: 6.1

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0046872 metal ion binding