Spo28041.1 (mRNA) | SpinachBase

Overview


Name	Spo28041.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L17
Location	chr5 : 11821627 .. 11823807 (-)
Sequence length	1211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTTCATCGTCAACAACATGGAGCATGGCAACTCTGAAATCAGCTTTGCCTTCGGTTCCATCAGCTCCCATGTTCAACAAGTTGCCCATTTCGGCTTCCTATAATACATCGCCCTCAAAGTCGCGTACAGTGGGACTATCACTACGCAGTTCTAAGCCTCTTCTACCACACTACAGTGGCCTCAGTGCACTCTGCCCACTTCTCTCATCATTTCCCTCTGGATCAGGTATCATCTCTACCCCTTTGGAAATAAGTAATGAGTTTGTTGGCTATTTCTGTGTTTTTTCCATGACTGGATATATATACTTGGGTAACTAGTGAAGTATTAATCCACCCTATGATCCTGTGGAACCTATTGTGACCTGTGACACATAAATGAGCTTCAATTATATGCGCATTGAGTAGTAGCATGATATAGTGAAGGTAAAAGCTGTCTTAGGCTTTTCTTGATGTTAAATTCTTTCATTTTGATCCTGTGGTCTTATTATGCCTCGTACTTCGTATCGCATAAAGTCATGGTGAAGTGAAGCTATTAGCCAAATAAGTGACAGGGTTATTGAAACGGTTGATGTTCCTAAGTCCATTTTGCTCAAGTATACTCTTAATTCTGAAGCTGACAAAAGAATGTTGTTGGTTGTCACAACTGACAAGAAGTTTTTAGGAAGGGGTAAATGAACTTGGTATTTGTATTTTCCTTTTTACCCATAAGGCAGGTAGTTTTTGGATAGCCTTTTTCCGAAAGAAGACTTGAATATTATTGTAGACCAGGACTTGGTGGTGTAGCTCCCTGTTTGACAAAGATAATGCAAAATGCAATACAATGTTTGTAAATTCATTAACGGAACTTTTCTGGGTGATGTAAGTTTTTGTATAAACATGAACAATCTCTTATGAGAGACAAAAAGGTGTATGACTCTGTTGCTTCAGTTTTGTAAGTAATGGGAAGCTTACAGGCAGCTGGGTGTTGAAAACTTGAAATGCTTTTCATATTTGTTTAAGAAGTTAACTCTCTCATACTGATGAAGATGTACCGTTCTCCCCGTGGAAGAGGGAATGGGTTTTTTTGACAAAATAATAACGAGCTGTTTTTCAATCTAATCTGACCATTTGGTGATGTACGGAGTATCATTTTTGTTGCTTTATTCTGCCTGTACAACCTCGAGTTGTGCACTTACTCTAGTTGTCTCCTTTAACAGAGAACTCAGGATTTGACAGTCTTTTCAAAATGATCGATAATGGAGGTCGATTCTTTGCCATGAAACACGGAAGGAAAATACATAGACTTAGCAGGCCTGCAGATCAGCGTCGTGCACTTCTCCGAGGCCTTACAACTCAACTTCTTAAGCATGGACGTATCAAAACTACAAGAGCAAAAGCAAGTGCTATGAGGAAGTACGTTGACAAAATGATTACCTTGGCTAAAGAGGGATCCCTTCACAAAAGAAGGCAAGCACTTGGTTTTATATATGAGAAGCAGATTGTTCATGCCTTGTTTGCCGAGGTGCCAGAAAGGTACGGAGACAGAAATGGAGGATACACAAGGATTATCAGGACACTCCCAAGGAGAGGAGACAATGCTCCAATGGCCTACATTGAGCTTGTTTAGGTCACTTGATATTTTCAATTTGCACTGAGCTTGTATCATGAGAGATCTTTGTTCTGTAGTTTTGGGGGTTTTTATTTTAGCATACATCTTTTTGTTTATTACCATTTTGTAATTGCAACTCAATCTCCTGTTACTTTAGAACTACTATGATTAAAGCTGTATCCAGAATTTGGATGTGGTGTGGTTATTTACTTATTTACCACAAATTTGGATGTTCTATTTATAATTTCATTAGCATTATGGTTCACTTGATATGGCAGAACCGCAGAATTTCTGTACTTACAATTTCCGTATTTGGCCTCCAGATTTTTCTCTAGAGGGAGGATACTACAGATTCAGCACTTTGATATCTTCTAAACACCTAAGAAACAGCAAAACTGCAAGAGTATTGTTTTGGTGTACAACGCTCATCGTACGTGCACTCTCTCGTCCACAATCTAATTTGCGACAAAACTTGGCTTCTTCTCTTTGATTTTGCTAGTCACAAATTGTATTAACTAGATTTTAGCCCGTGCGATTCACGGATTCTATTAAATTGTTAAGTTCAAATAAAACTCCTATATACACCA

mRNA sequence

ATGGCTTGTTCATCGTCAACAACATGGAGCATGGCAACTCTGAAATCAGCTTTGCCTTCGGTTCCATCAGCTCCCATGTTCAACAAGTTGCCCATTTCGGCTTCCTATAATACATCGCCCTCAAAGTCGCGTACAGTGGGACTATCACTACGCAGTTCTAAGCCTCTTCTACCACACTACAGTGGCCTCAGTGCACTCTGCCCACTTCTCTCATCATTTCCCTCTGGATCAGAGAACTCAGGATTTGACAGTCTTTTCAAAATGATCGATAATGGAGGTCGATTCTTTGCCATGAAACACGGAAGGAAAATACATAGACTTAGCAGGCCTGCAGATCAGCGTCGTGCACTTCTCCGAGGCCTTACAACTCAACTTCTTAAGCATGGACGTATCAAAACTACAAGAGCAAAAGCAAGTGCTATGAGGAAGTACGTTGACAAAATGATTACCTTGGCTAAAGAGGGATCCCTTCACAAAAGAAGGCAAGCACTTGGTTTTATATATGAGAAGCAGATTGTTCATGCCTTGTTTGCCGAGGTGCCAGAAAGGTACGGAGACAGAAATGGAGGATACACAAGGATTATCAGGACACTCCCAAGGAGAGGAGACAATGCTCCAATGGCCTACATTGAGCTTGTTTAGGTCACTTGATATTTTCAATTTGCACTGAGCTTGTATCATGAGAGATCTTTGTTCTGTAGTTTTGGGGGTTTTTATTTTAGCATACATCTTTTTGTTTATTACCATTTTGTAATTGCAACTCAATCTCCTGTTACTTTAGAACTACTATGATTAAAGCTGTATCCAGAATTTGGATGTGGTGTGGTTATTTACTTATTTACCACAAATTTGGATGTTCTATTTATAATTTCATTAGCATTATGGTTCACTTGATATGGCAGAACCGCAGAATTTCTGTACTTACAATTTCCGTATTTGGCCTCCAGATTTTTCTCTAGAGGGAGGATACTACAGATTCAGCACTTTGATATCTTCTAAACACCTAAGAAACAGCAAAACTGCAAGAGTATTGTTTTGGTGTACAACGCTCATCGTACGTGCACTCTCTCGTCCACAATCTAATTTGCGACAAAACTTGGCTTCTTCTCTTTGATTTTGCTAGTCACAAATTGTATTAACTAGATTTTAGCCCGTGCGATTCACGGATTCTATTAAATTGTTAAGTTCAAATAAAACTCCTATATACACCA

Coding sequence (CDS)

ATGGCTTGTTCATCGTCAACAACATGGAGCATGGCAACTCTGAAATCAGCTTTGCCTTCGGTTCCATCAGCTCCCATGTTCAACAAGTTGCCCATTTCGGCTTCCTATAATACATCGCCCTCAAAGTCGCGTACAGTGGGACTATCACTACGCAGTTCTAAGCCTCTTCTACCACACTACAGTGGCCTCAGTGCACTCTGCCCACTTCTCTCATCATTTCCCTCTGGATCAGAGAACTCAGGATTTGACAGTCTTTTCAAAATGATCGATAATGGAGGTCGATTCTTTGCCATGAAACACGGAAGGAAAATACATAGACTTAGCAGGCCTGCAGATCAGCGTCGTGCACTTCTCCGAGGCCTTACAACTCAACTTCTTAAGCATGGACGTATCAAAACTACAAGAGCAAAAGCAAGTGCTATGAGGAAGTACGTTGACAAAATGATTACCTTGGCTAAAGAGGGATCCCTTCACAAAAGAAGGCAAGCACTTGGTTTTATATATGAGAAGCAGATTGTTCATGCCTTGTTTGCCGAGGTGCCAGAAAGGTACGGAGACAGAAATGGAGGATACACAAGGATTATCAGGACACTCCCAAGGAGAGGAGACAATGCTCCAATGGCCTACATTGAGCTTGTTTAG

Protein sequence

MACSSSTTWSMATLKSALPSVPSAPMFNKLPISASYNTSPSKSRTVGLSLRSSKPLLPHYSGLSALCPLLSSFPSGSENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo28041	Spo28041	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo28041.1	Spo28041.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo28041.1.CDS.2	Spo28041.1.CDS.2	CDS
Spo28041.1.CDS.1	Spo28041.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo28041.1.utr3p.1	Spo28041.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo28041.1.exon.2	Spo28041.1.exon.2	exon
Spo28041.1.exon.1	Spo28041.1.exon.1	exon

Homology

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BLAST of Spo28041.1 vs. NCBI nr
Match: gi|731334830|ref|XP_010678420.1| (PREDICTED: 50S ribosomal protein L17, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 351.3 bits (900), Expect = 1.200e-93
Identity = 181/213 (84.98%), Postives = 197/213 (92.49%), Query Frame = 1

		  
Query: 1   MACSSSTTWSMATLKSALPSVPSAPMFNKLPISASYNTSPSKSRTVGLSLRSSKPLLPHY 60
           MACSSST WSMATLK+ALPS+PSAP+FNKLPISA  NTS SK   VGLSLRSSKPLLP +
Sbjct: 1   MACSSSTAWSMATLKAALPSIPSAPVFNKLPISAVCNTSSSKPPRVGLSLRSSKPLLPQF 60

Query: 61  SGLSALCPLLSSFPSGSENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRALLRG 120
           SGL+ALCPLL   PSG ENSGFDSLF++IDNGGRFFAM+HGRK+ +L+RP DQRRALLR 
Sbjct: 61  SGLTALCPLL---PSGLENSGFDSLFRIIDNGGRFFAMRHGRKVPKLNRPPDQRRALLRA 120

Query: 121 LTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEV 180
           LTTQLLKHGRIKTTRA+ASA+RKY+DKMITLAKEG+LHKRRQALGFIYEKQIVHALFAEV
Sbjct: 121 LTTQLLKHGRIKTTRARASAVRKYIDKMITLAKEGTLHKRRQALGFIYEKQIVHALFAEV 180

Query: 181 PERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
            +RYGDRNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 QDRYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of Spo28041.1 vs. NCBI nr
Match: gi|951040089|ref|XP_014517581.1| (PREDICTED: 50S ribosomal protein L17, chloroplastic [Vigna radiata var. radiata])

HSP 1 Score: 271.2 bits (692), Expect = 1.600e-69
Identity = 149/216 (68.98%), Postives = 176/216 (81.48%), Query Frame = 1

		  
Query: 1   MACSSSTTWSMATLKSALPSVPSAP--MFNKLPISASYNTSPSKSRTVGLSLRSSKPLLP 60
           MA SS + WSM++L+SALPS  S P    + +  S + ++SPS S  + +S    K LL 
Sbjct: 7   MATSSDSRWSMSSLRSALPSPSSPPSSFSSSVRFSVAASSSPS-SMKLRISRTKPKSLLT 66

Query: 61  HYSGLSALCPLLSSFPSG-SENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRAL 120
            ++GL+ L PL  S PS  SE +GFD  F +IDNGGR FAM+HGR++ +L+RP DQRRAL
Sbjct: 67  SFTGLTPLNPLFFSAPSSASEYTGFDHSFTIIDNGGRVFAMRHGRRVPKLNRPPDQRRAL 126

Query: 121 LRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALF 180
           +RGLTTQLLK+GRIKTTRA+ASA+RKYVDKMITLAK+GSLHKRRQALGFIYEKQIVHALF
Sbjct: 127 IRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALF 186

Query: 181 AEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           AEVPERYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 AEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 221

[Close]

BLAST of Spo28041.1 vs. NCBI nr
Match: gi|1021570921|ref|XP_016176630.1| (PREDICTED: 50S ribosomal protein L17, chloroplastic [Arachis ipaensis])

HSP 1 Score: 270.0 bits (689), Expect = 3.500e-69
Identity = 143/210 (68.10%), Postives = 171/210 (81.43%), Query Frame = 1

		  
Query: 4   SSSTTWSMATLKSALPSVPSAPMFNKLPISASYNTSPSKSRTVGLSLRSSKPLLPHYSGL 63
           +S ++W M +L+S LPS+P  P  +   I   ++ S S SRT+ +S    K LLP ++GL
Sbjct: 20  TSRSSWCMNSLRSTLPSLPPLPASS---IRFPHSPSSSSSRTLRISRSKPKALLPSFTGL 79

Query: 64  SALCPLLSSFPSGSENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTT 123
           + L PL  S  S SE +GFD  F +IDNGGR  AM+HGR++ +L+RP DQRRAL+RGLTT
Sbjct: 80  APLHPLFLSGSSSSEFTGFDHCFTIIDNGGRVSAMRHGRRVPKLNRPPDQRRALIRGLTT 139

Query: 124 QLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPER 183
           QLLK+GRIKTTRA+ASA+RKYVDKMITLAK+GSLHKRRQALGFIYEKQIVHALFAEVPER
Sbjct: 140 QLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPER 199

Query: 184 YGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           YG+RNGGYTRIIRTLPRRGDNAPMA+IELV
Sbjct: 200 YGERNGGYTRIIRTLPRRGDNAPMAFIELV 226

[Close]

BLAST of Spo28041.1 vs. NCBI nr
Match: gi|661892859|emb|CDP04017.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 270.0 bits (689), Expect = 3.500e-69
Identity = 152/215 (70.70%), Postives = 174/215 (80.93%), Query Frame = 1

		  
Query: 3   CSSST---TWSMATLKSALPSVPSAPMFNKLPISASYNTSPSKSRTVGLSLRSSKP-LLP 62
           C SST   TWS+++LKS LPSVP   +    P+  S  +SP++ R    +LR+S P LL 
Sbjct: 4   CGSSTAFATWSISSLKSVLPSVP---VQRTPPLHFSIGSSPTRLRVA--TLRNSSPGLLQ 63

Query: 63  HYSGLSALCPLLSSFPSGSENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRALL 122
            + GL+ L PLLS   S  ++ GF+  F  IDNGGRFFAM+HGRK+ +L+RP DQRRALL
Sbjct: 64  SFVGLAPLNPLLSL--SSLDSFGFEHSFTTIDNGGRFFAMRHGRKVPKLNRPPDQRRALL 123

Query: 123 RGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFA 182
           RGLTTQLLKHGRIKTTRA+ASAMRKYVDKMITLAK+GSLHKRRQALGFIYEKQIVHALFA
Sbjct: 124 RGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFA 183

Query: 183 EVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           EV ERYGDRNGGYTRIIRTLPRRGDNAPMA+IELV
Sbjct: 184 EVQERYGDRNGGYTRIIRTLPRRGDNAPMAFIELV 211

[Close]

BLAST of Spo28041.1 vs. NCBI nr
Match: gi|920711504|gb|KOM52753.1| (hypothetical protein LR48_Vigan09g141200 [Vigna angularis])

HSP 1 Score: 268.9 bits (686), Expect = 7.800e-69
Identity = 150/219 (68.49%), Postives = 177/219 (80.82%), Query Frame = 1

		  
Query: 1   MACSSSTTWSMATLKSALPSVPSAPMFN-----KLPISASYNTSPSKSRTVGLSLRSSKP 60
           MA SS + WSM++L+SALPS PS P  +     +  ++AS ++S  K R   +S    K 
Sbjct: 7   MATSSDSRWSMSSLRSALPS-PSTPPSSLSSSVRFSVAASSSSSSMKLR---ISRTKPKS 66

Query: 61  LLPHYSGLSALCPLLSSFPSG-SENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQR 120
           LL  ++GL+ L PL  S PS  SE +GFD  F +IDNGGR FAM+HGR++ +L+RP DQR
Sbjct: 67  LLTTFTGLTPLNPLFFSAPSSASEYTGFDHSFTIIDNGGRVFAMRHGRRVPKLNRPPDQR 126

Query: 121 RALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVH 180
           RAL+RGLTTQLLK+GRIKTTRA+ASA+RKYVDKMITLAK+GSLHKRRQALGFIYEKQIVH
Sbjct: 127 RALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVH 186

Query: 181 ALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           ALFAEVPERYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 ALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 221

[Close]

BLAST of Spo28041.1 vs. UniProtKB/TrEMBL
Match: A0A068U6S2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016544001 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.400e-69
Identity = 152/215 (70.70%), Postives = 174/215 (80.93%), Query Frame = 1

		  
Query: 3   CSSST---TWSMATLKSALPSVPSAPMFNKLPISASYNTSPSKSRTVGLSLRSSKP-LLP 62
           C SST   TWS+++LKS LPSVP   +    P+  S  +SP++ R    +LR+S P LL 
Sbjct: 4   CGSSTAFATWSISSLKSVLPSVP---VQRTPPLHFSIGSSPTRLRVA--TLRNSSPGLLQ 63

Query: 63  HYSGLSALCPLLSSFPSGSENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRALL 122
            + GL+ L PLLS   S  ++ GF+  F  IDNGGRFFAM+HGRK+ +L+RP DQRRALL
Sbjct: 64  SFVGLAPLNPLLSL--SSLDSFGFEHSFTTIDNGGRFFAMRHGRKVPKLNRPPDQRRALL 123

Query: 123 RGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFA 182
           RGLTTQLLKHGRIKTTRA+ASAMRKYVDKMITLAK+GSLHKRRQALGFIYEKQIVHALFA
Sbjct: 124 RGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFA 183

Query: 183 EVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           EV ERYGDRNGGYTRIIRTLPRRGDNAPMA+IELV
Sbjct: 184 EVQERYGDRNGGYTRIIRTLPRRGDNAPMAFIELV 211

[Close]

BLAST of Spo28041.1 vs. UniProtKB/TrEMBL
Match: A0A0S3S5S7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G163800 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.400e-69
Identity = 150/219 (68.49%), Postives = 177/219 (80.82%), Query Frame = 1

		  
Query: 1   MACSSSTTWSMATLKSALPSVPSAPMFN-----KLPISASYNTSPSKSRTVGLSLRSSKP 60
           MA SS + WSM++L+SALPS PS P  +     +  ++AS ++S  K R   +S    K 
Sbjct: 7   MATSSDSRWSMSSLRSALPS-PSTPPSSLSSSVRFSVAASSSSSSMKLR---ISRTKPKS 66

Query: 61  LLPHYSGLSALCPLLSSFPSG-SENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQR 120
           LL  ++GL+ L PL  S PS  SE +GFD  F +IDNGGR FAM+HGR++ +L+RP DQR
Sbjct: 67  LLTTFTGLTPLNPLFFSAPSSASEYTGFDHSFTIIDNGGRVFAMRHGRRVPKLNRPPDQR 126

Query: 121 RALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVH 180
           RAL+RGLTTQLLK+GRIKTTRA+ASA+RKYVDKMITLAK+GSLHKRRQALGFIYEKQIVH
Sbjct: 127 RALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVH 186

Query: 181 ALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           ALFAEVPERYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 ALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 221

[Close]

BLAST of Spo28041.1 vs. UniProtKB/TrEMBL
Match: A0A0L9VCL8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g141200 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.400e-69
Identity = 150/219 (68.49%), Postives = 177/219 (80.82%), Query Frame = 1

		  
Query: 1   MACSSSTTWSMATLKSALPSVPSAPMFN-----KLPISASYNTSPSKSRTVGLSLRSSKP 60
           MA SS + WSM++L+SALPS PS P  +     +  ++AS ++S  K R   +S    K 
Sbjct: 7   MATSSDSRWSMSSLRSALPS-PSTPPSSLSSSVRFSVAASSSSSSMKLR---ISRTKPKS 66

Query: 61  LLPHYSGLSALCPLLSSFPSG-SENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQR 120
           LL  ++GL+ L PL  S PS  SE +GFD  F +IDNGGR FAM+HGR++ +L+RP DQR
Sbjct: 67  LLTTFTGLTPLNPLFFSAPSSASEYTGFDHSFTIIDNGGRVFAMRHGRRVPKLNRPPDQR 126

Query: 121 RALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVH 180
           RAL+RGLTTQLLK+GRIKTTRA+ASA+RKYVDKMITLAK+GSLHKRRQALGFIYEKQIVH
Sbjct: 127 RALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVH 186

Query: 181 ALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           ALFAEVPERYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 ALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 221

[Close]

BLAST of Spo28041.1 vs. UniProtKB/TrEMBL
Match: A0A151R884_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_039960 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 7.900e-68
Identity = 144/214 (67.29%), Postives = 175/214 (81.78%), Query Frame = 1

		  
Query: 1   MACSSSTT-WSMATLKSALPSVPSAPMFNKLPISASYNTSPSKSRTVGLSLRSSKPLLPH 60
           MA ++ T+ WSMA+L+SALPS  S     + P S+  ++S +K R   +S    K LL  
Sbjct: 7   MATTTDTSRWSMASLRSALPSPSSVSSSLRFPSSSPSSSSSTKLR---ISRTKPKSLLTS 66

Query: 61  YSGLSALCPLLSSFPSGSENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRALLR 120
           ++GL+ L PL  S PS SE +GFD  F ++DNGGR +AM+HG+++ +L+RP DQRRAL+R
Sbjct: 67  FTGLAPLNPLFLSAPS-SEYTGFDHTFTIVDNGGRVYAMRHGKRVPKLNRPPDQRRALIR 126

Query: 121 GLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAE 180
           GLTTQLLK+GRIKTTRA+ASA+RKYVDKMITLAK+GSLHKRRQALGFIYEKQIVHALFAE
Sbjct: 127 GLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAE 186

Query: 181 VPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           VP+RYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 VPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 216

[Close]

BLAST of Spo28041.1 vs. UniProtKB/TrEMBL
Match: K4CAD1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.000e-67
Identity = 141/209 (67.46%), Postives = 170/209 (81.34%), Query Frame = 1

		  
Query: 5   SSTTWSMATLKSALPSVPSAPMFNKLPISASYNTSPSKSRTVGLSLRSSKPLLPHYSGLS 64
           +STTWSM+ LKSALPS+   P+ N    S  +++  S SR      +SS  ++  + GL+
Sbjct: 2   ASTTWSMSCLKSALPSIQ--PISNS---SLRFSSGSSPSRIRICKPKSSSTIIQSFEGLA 61

Query: 65  ALCPLLSSFPSGSENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQ 124
            L PLLS F    +++ F++ F +IDNGGR FAM+HGRK+ +L+RP DQRRALLRGLTTQ
Sbjct: 62  PLHPLLSLF--SQDSTSFENSFTIIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQ 121

Query: 125 LLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERY 184
           LLKHGRIKTT+A+A A+RKYVDKM+T+AK+GSLHKRRQALGFIYEKQIVHALFAEVPERY
Sbjct: 122 LLKHGRIKTTKARARAVRKYVDKMVTMAKDGSLHKRRQALGFIYEKQIVHALFAEVPERY 181

Query: 185 GDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           G+RNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 182 GERNGGYTRIIRTLPRRGDNAPMAYIELV 203

[Close]

BLAST of Spo28041.1 vs. ExPASy Swiss-Prot
Match: RK17_TOBAC (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum GN=RPL17 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 5.400e-70
Identity = 146/213 (68.54%), Postives = 171/213 (80.28%), Query Frame = 1

		  
Query: 4   SSSTTWSMATLKSALPSVPSAPMFNKLPISAS---YNTSPSKSRTVGLSLRSSKPLLPHY 63
           S+STTWSM+ LKSALPS+         PIS+S   ++  PS SR      +SS  LL  +
Sbjct: 3   SASTTWSMSCLKSALPSIQ--------PISSSSLRFSCGPSPSRLRICKPKSSSRLLHSF 62

Query: 64  SGLSALCPLLSSFPSGSENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRALLRG 123
            GL+ L PLLS   S  +++ F+  F +IDNGGR FAM+HGRK+ +L+RP DQRRALLRG
Sbjct: 63  VGLAPLHPLLSL--SSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRG 122

Query: 124 LTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEV 183
           LTTQLLKHGRIKTT+A+A A+RKYVDKMIT+AK+GSLHKRRQALGFIYEKQIVHALFAEV
Sbjct: 123 LTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEV 182

Query: 184 PERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           P+RYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 183 PDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 205

[Close]

BLAST of Spo28041.1 vs. ExPASy Swiss-Prot
Match: RK17_ARATH (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana GN=RPL17 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.100e-68
Identity = 144/211 (68.25%), Postives = 167/211 (79.15%), Query Frame = 1

		  
Query: 4   SSSTTWSMATLKSALPSVPSAPMFNKLPISASYNTSPSKSRTVGLSLRSSKPLLPHYSGL 63
           S S  WSM++LKSALPS  S     +LP S+S        R V L L  S P LP +SGL
Sbjct: 15  SVSRVWSMSSLKSALPSTASL----RLPSSSS-------RRPVTLRLPISSPSLPSFSGL 74

Query: 64  SALCPLLS-SFPSGSENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLT 123
           S + PLLS   P       F++ FK++D GGR +AM+HGR++ +L+RP DQR+ALLRGLT
Sbjct: 75  SPVNPLLSIGLPDWQS---FENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLT 134

Query: 124 TQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPE 183
           TQLLKHGRIKTTRA+ASAMRK+VDKMITLAK+GSLHKRRQALG+IYEKQIVHALFAEVP+
Sbjct: 135 TQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPD 194

Query: 184 RYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           RYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 195 RYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of Spo28041.1 vs. ExPASy Swiss-Prot
Match: RL17_ACAM1 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) GN=rplQ PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.500e-40
Identity = 79/115 (68.70%), Postives = 100/115 (86.96%), Query Frame = 1

		  
Query: 98  MKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSL 157
           M+H  ++H+L +PADQR+ALLR L+TQL++HGR+ TT+A+A A+R  V+KMITLAK+GSL
Sbjct: 1   MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSL 60

Query: 158 HKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIEL 213
             RRQALG+IY+KQ+VHALF +V +RYGDRNGGYTRIIRT+ RRGDNA MA IEL
Sbjct: 61  ASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIEL 115

[Close]

BLAST of Spo28041.1 vs. ExPASy Swiss-Prot
Match: RL17_THEEB (50S ribosomal protein L17 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.500e-39
Identity = 76/116 (65.52%), Postives = 100/116 (86.21%), Query Frame = 1

		  
Query: 98  MKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSL 157
           M+H R++ +L RPADQR+ALLR LTT+L++HGRI TT+A+A A+R   ++MITLAK+GSL
Sbjct: 1   MRHQRRVPQLGRPADQRKALLRALTTELIRHGRITTTKARAKAVRAEAERMITLAKDGSL 60

Query: 158 HKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
             RR+ALG++Y+KQ+VH+LFA+ PERYGDR GGYTRIIR++ RRGDNA +A IELV
Sbjct: 61  AARRRALGYLYDKQLVHSLFAQAPERYGDRQGGYTRIIRSVRRRGDNAELAVIELV 116

[Close]

BLAST of Spo28041.1 vs. ExPASy Swiss-Prot
Match: RL17_SYNR3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain RCC307) GN=rplQ PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.400e-39
Identity = 77/116 (66.38%), Postives = 99/116 (85.34%), Query Frame = 1

		  
Query: 98  MKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSL 157
           M+H  ++ +L RPADQR+A+LRGLTTQL++ GR+ TT+A+A A+R   ++MI+LAK+GSL
Sbjct: 1   MRHQCRVPQLGRPADQRKAMLRGLTTQLIREGRVTTTKARAKALRDETERMISLAKDGSL 60

Query: 158 HKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
             RR+ALG+IY+KQ+VHALF +  ERYGDRNGGYTRIIRT+PRRGDNA MA IELV
Sbjct: 61  AARRRALGYIYDKQLVHALFDKASERYGDRNGGYTRIIRTVPRRGDNAEMAIIELV 116

[Close]

BLAST of Spo28041.1 vs. TAIR (Arabidopsis)
Match: AT3G54210.1 (Ribosomal protein L17 family protein)

HSP 1 Score: 258.8 bits (660), Expect = 2.900e-69
Identity = 144/211 (68.25%), Postives = 167/211 (79.15%), Query Frame = 1

		  
Query: 4   SSSTTWSMATLKSALPSVPSAPMFNKLPISASYNTSPSKSRTVGLSLRSSKPLLPHYSGL 63
           S S  WSM++LKSALPS  S     +LP S+S        R V L L  S P LP +SGL
Sbjct: 15  SVSRVWSMSSLKSALPSTASL----RLPSSSS-------RRPVTLRLPISSPSLPSFSGL 74

Query: 64  SALCPLLS-SFPSGSENSGFDSLFKMIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLT 123
           S + PLLS   P       F++ FK++D GGR +AM+HGR++ +L+RP DQR+ALLRGLT
Sbjct: 75  SPVNPLLSIGLPDWQS---FENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLT 134

Query: 124 TQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPE 183
           TQLLKHGRIKTTRA+ASAMRK+VDKMITLAK+GSLHKRRQALG+IYEKQIVHALFAEVP+
Sbjct: 135 TQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPD 194

Query: 184 RYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           RYG+RNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 195 RYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of Spo28041.1 vs. TAIR (Arabidopsis)
Match: AT5G09770.1 (Ribosomal protein L17 family protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.100e-25
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 1

		  
Query: 103 KIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQ 162
           K  +L RPA  R ++LR + +QL+KH RI+TT  KA  +R+  D MI L KEGSL   R+
Sbjct: 3   KFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARR 62

Query: 163 ALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           A GF+    ++H +F E+  RY DR GGYTR++RT  R GD APMAYIE +
Sbjct: 63  AAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 113

[Close]

BLAST of Spo28041.1 vs. TAIR (Arabidopsis)
Match: AT5G64650.1 (Ribosomal protein L17 family protein)

HSP 1 Score: 111.7 bits (278), Expect = 5.600e-25
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 1

		  
Query: 103 KIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDKMITLAKEGSLHKRRQ 162
           K  +L RPA  R ++LR + +QL++H RI+TT  KA  +R+  D MI L KEGSL   R+
Sbjct: 3   KFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARR 62

Query: 163 ALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 214
           A GF+    ++H +F E+  RY DR GGYTR++RT  R GD APMAYIE +
Sbjct: 63  AAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFI 113

The following BLAST results are available for this feature:

BLAST of Spo28041.1 vs. NCBI nr
BLAST of Spo28041.1 vs. UniProtKB/TrEMBL
BLAST of Spo28041.1 vs. ExPASy Swiss-Prot
BLAST of Spo28041.1 vs. TAIR (Arabidopsis)

BLAST of Spo28041.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|731334830\|ref\|XP_010678420.1\|	1.2e-93	84.9	PREDICTED: 50S ribosomal prote...	[more]
gi\|951040089\|ref\|XP_014517581.1\|	1.6e-69	68.9	PREDICTED: 50S ribosomal prote...	[more]
gi\|1021570921\|ref\|XP_016176630.1\|	3.5e-69	68.1	PREDICTED: 50S ribosomal prote...	[more]
gi\|661892859\|emb\|CDP04017.1\|	3.5e-69	70.7	unnamed protein product [Coffe...	[more]
gi\|920711504\|gb\|KOM52753.1\|	7.8e-69	68.4	hypothetical protein LR48_Viga...	[more]

BLAST of Spo28041.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A068U6S2_COFCA	2.4e-69	70.7	Uncharacterized protein OS=Cof...	[more]
A0A0S3S5S7_PHAAN	5.4e-69	68.4	Uncharacterized protein OS=Vig...	[more]
A0A0L9VCL8_PHAAN	5.4e-69	68.4	Uncharacterized protein OS=Pha...	[more]
A0A151R884_CAJCA	7.9e-68	67.2	Uncharacterized protein OS=Caj...	[more]
K4CAD1_SOLLC	1.0e-67	67.4	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo28041.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RK17_TOBAC	5.4e-70	68.5	50S ribosomal protein L17, chl...	[more]
RK17_ARATH	5.1e-68	68.2	50S ribosomal protein L17, chl...	[more]
RL17_ACAM1	1.5e-40	68.7	50S ribosomal protein L17 OS=A...	[more]
RL17_THEEB	6.5e-39	65.5	50S ribosomal protein L17 OS=T...	[more]
RL17_SYNR3	8.4e-39	66.3	50S ribosomal protein L17 OS=S...	[more]

BLAST of Spo28041.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
AT3G54210.1	2.9e-69	68.2	Ribosomal protein L17 family p...	[more]
AT5G09770.1	1.1e-25	50.4	Ribosomal protein L17 family p...	[more]
AT5G64650.1	5.6e-25	49.5	Ribosomal protein L17 family p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000456	Ribosomal protein L17	GENE3D	3.90.1030.10		coord: 98..213 score: 1.0
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 102..213 score: 26
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 97..213 score: 1.3
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 117..213 score: 1.1
IPR000456	Ribosomal protein L17	TIGRFAMs	TIGR00059	TIGR00059	coord: 104..213 score: 2.7
IPR000456	Ribosomal protein L17	unknown	SSF64263	Prokaryotic ribosomal protein L17	coord: 98..213 score: 1.02

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome