Spo05275.1 (mRNA)

Overview
NameSpo05275.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S19
Locationchr5 : 12129385 .. 12132084 (-)
Sequence length965
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGGATCCGGTTCATGTGGAGTATACAAGGCCCGAACCTATAAACCGGATACGGGTAAGCAGGTGAGAGGGTTCTTTAAAACCTAAACAAAACCCTAGAAGCCCCTCCTTTGCCATCAAAACTCGCCTCCATCCATCTGCGTCTGCACAAACGGCCTGTGTGAGGAGAGAGAAAGAGAGAAGGAGAGTAAAAGAACAACAAACAACAACAATGGAGGGTGGGAAAACAGTAAAAGATGTATCTCCTCACGATTTCGTCAAAGCTTATGCTGCTCATCTCAAGCGCTCCGGCAAGGTTTCCCTCTTTCTCTCTCTTCTTCTCCTTTATTGCGGTTTTCTGACTCAAAATTCTGATTTTGATATCAAGCTCTCGTTTTTTTTATTGAATGATGTTAATATATGATACTCTGTGATTAGGTTATGTTTGCGCTAGTTTTTTGTATTGAAATTGAAATTCGAGCTTGATTTTTTTCCCCATTTAATACGGTTTCAGGGGTTTATAGAGATTTTAGGGTTGTATTTGTTATGGTGCATACACGATGAAATCATTTGACGAATGTGACAAATTTCATGGAGTTTTATGTTATTTTTGGAATCTTTTTTATGTAGTACGACTGTACGAGTATATTAATGAACGAATTTATTAGTTTTAATAGTGTTTTATGTCCTATTGGTAATCATCTATATAGTGTGAGCTGATTTCGTTTAGTTCGTTTGACATTTGTATTAGGAATGATTATATGCCGTAGAATGAAGAATTGGGTAGCCTGATTGTGCAGTTTAGACTCAAAAATTGAATAAAATAAGGTAGAGAAGCTTTAATCATGGCAAGCGTAGTGATTTTAGTTGCTGCATTTTCCTTGGTCTAATATAGTAGATGGCCGTATTTGCATTTGAATAAAATAAGATCAGATACACTTGAATTAAGGCGAAATTTGTGATCTTGGTTAAATTGTTTTTTCTTGGCATAATTTGGGGTAGGAACAATTGACTTGAAAATTGAGATAATATGTTTATCACTTGACCCTAGTTGCAATGAATTAAATAGTTACTTGTAGCAAAGTTAGACTTTTAAATATCATAGTCTTTGTTTTCTTTTTCTCTTTCTAGATGGAGTTGCCTCACTGGACTGACATTGTGAAGACTGGTAAGCTCAAGGAACTCGCTCCATATGACGCTGACTGGTATTACATTAGGGCTGGTAAGTGTATTTTCCTGGGTGCTTTATTTTATTGTGCACCTGTGATTGAAACTACCTGTTATTACCTTTCCTGTACCTATCTATAATTCCTGCCTATCTCATCTTGCGTGTTTTTGCTAAGCTAATGTAGCCATGTAGGTTTGTACAATATGAAGATGCTAGCATATTTAAACAAAAAAGATAAAAGAATGCTAGCATCAGTTCGAAGTCTGTTACTTGGATAGGTGCGCTACTTAAAAGTTGGGATATCTGTATTTTCCTTTTGTTTTTGTCTTGGGTTGTATATATTTGCGGATCATGATTTTATGGTGCATTGAGGTTTGTACTTTATTTCAGGAGCTTATTTTATGGTCAAGTGATAGAGATCATGTAGATTTTAAAAGTATGATAACCTTGTAGGTGTTTTGAAGTAGAGTATGATGTTTGATTGTGTTGTGATTGGCTACTGAAGATATTTCCGATTAAGTGTCACCCGGTTGTTGCTTTGTTGGTCTTCCATTTTATTATCTTTTACCTTCTAACTACATGGAAATTCAGTAAATAGTACAATAGGCTTGTGTAATAGATGTGCCTTCTATTTCTCACATCTGCTGTGAAATTTGAACTTGCCATTGTATGTTTGTTGTGTTTTAAAATAATTAAAGCTCGTTCTTTTTGGCAGCCTCAATGGCAAGGAAAGTCTACTTGAGGGGTGGACTTGGAGTTGGTGGATTTAGGAGGATTTATGGAGGAAGCAAGAGAAACGGTAGTCGCCCTTCCCATTTTTGCAAGAGCAGTGGTGCTGTTGCCCGTCACATTCTGCAGCAATTAGAGCAAGTTAAAATTGTTGAAATTGATCCTAAAGGGTAAGTTCTTCTTTATTGTGATTATAATCAGCTTGTAGATACAAGCCCTGTGGCTGCATTGTGACTTTGTGAGTCAATCTTGACACATTTAGGTGTAATGTTAGCCATTTCAAAGCTGCAATTAAAATATTGTACACTCAATTTTGATCATTTAACAAGTTGATGTGCATTAGTTTATGGTGTAATGTTTCTGGCTCTCAAAAGGGTAGTTATGTGGTGATGGACAGTTCACTGACATTTTTGCATATTTATCTGGCAGAGGAAGGAAAATCACATCAAGCGGCCAACGTGATCTCGATCAAGTAGCTGGCAGAATTGGTGTTGAGGTGTAAGAAAATTGGTCTGTACTCCTACAAATACCAATCAGATCGTTTTTTTCTCTCCAGGTCGGATGAAAACTAGGTGTAGAGGAATTTGTTAGTTTTCTACAATTTTGTTTCCTATGTTGAATTTGTTAGTTTTCTGATGCTGTGCAAGTTATCTGAGATCATTTTGCTGCGGAGAACACAGTTTTGAAATTTAATTTTATGAAATATATTTTACTGATTTCCTACTTTGTTGTGTTTCACTTGTTTGTAAATCATTTGATTTTACATTGCTATCACAGATTGAGATAAGCAGTTTCGATTATTAACACCATTGATTATCGTTCTT

mRNA sequence

CATGGATCCGGTTCATGTGGAGTATACAAGGCCCGAACCTATAAACCGGATACGGGTAAGCAGGTGAGAGGGTTCTTTAAAACCTAAACAAAACCCTAGAAGCCCCTCCTTTGCCATCAAAACTCGCCTCCATCCATCTGCGTCTGCACAAACGGCCTGTGTGAGGAGAGAGAAAGAGAGAAGGAGAGTAAAAGAACAACAAACAACAACAATGGAGGGTGGGAAAACAGTAAAAGATGTATCTCCTCACGATTTCGTCAAAGCTTATGCTGCTCATCTCAAGCGCTCCGGCAAGATGGAGTTGCCTCACTGGACTGACATTGTGAAGACTGGTAAGCTCAAGGAACTCGCTCCATATGACGCTGACTGGTATTACATTAGGGCTGCCTCAATGGCAAGGAAAGTCTACTTGAGGGGTGGACTTGGAGTTGGTGGATTTAGGAGGATTTATGGAGGAAGCAAGAGAAACGGTAGTCGCCCTTCCCATTTTTGCAAGAGCAGTGGTGCTGTTGCCCGTCACATTCTGCAGCAATTAGAGCAAGTTAAAATTGTTGAAATTGATCCTAAAGGAGGAAGGAAAATCACATCAAGCGGCCAACGTGATCTCGATCAAGTAGCTGGCAGAATTGGTGTTGAGGTGTAAGAAAATTGGTCTGTACTCCTACAAATACCAATCAGATCGTTTTTTTCTCTCCAGGTCGGATGAAAACTAGGTGTAGAGGAATTTGTTAGTTTTCTACAATTTTGTTTCCTATGTTGAATTTGTTAGTTTTCTGATGCTGTGCAAGTTATCTGAGATCATTTTGCTGCGGAGAACACAGTTTTGAAATTTAATTTTATGAAATATATTTTACTGATTTCCTACTTTGTTGTGTTTCACTTGTTTGTAAATCATTTGATTTTACATTGCTATCACAGATTGAGATAAGCAGTTTCGATTATTAACACCATTGATTATCGTTCTT

Coding sequence (CDS)

ATGGAGGGTGGGAAAACAGTAAAAGATGTATCTCCTCACGATTTCGTCAAAGCTTATGCTGCTCATCTCAAGCGCTCCGGCAAGATGGAGTTGCCTCACTGGACTGACATTGTGAAGACTGGTAAGCTCAAGGAACTCGCTCCATATGACGCTGACTGGTATTACATTAGGGCTGCCTCAATGGCAAGGAAAGTCTACTTGAGGGGTGGACTTGGAGTTGGTGGATTTAGGAGGATTTATGGAGGAAGCAAGAGAAACGGTAGTCGCCCTTCCCATTTTTGCAAGAGCAGTGGTGCTGTTGCCCGTCACATTCTGCAGCAATTAGAGCAAGTTAAAATTGTTGAAATTGATCCTAAAGGAGGAAGGAAAATCACATCAAGCGGCCAACGTGATCTCGATCAAGTAGCTGGCAGAATTGGTGTTGAGGTGTAA

Protein sequence

MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAASMARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKGGRKITSSGQRDLDQVAGRIGVEV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo05275Spo05275gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo05275.1Spo05275.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05275.1.utr5p.1Spo05275.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05275.1.CDS.4Spo05275.1.CDS.4CDS
Spo05275.1.CDS.3Spo05275.1.CDS.3CDS
Spo05275.1.CDS.2Spo05275.1.CDS.2CDS
Spo05275.1.CDS.1Spo05275.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05275.1.utr3p.1Spo05275.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05275.1.exon.4Spo05275.1.exon.4exon
Spo05275.1.exon.3Spo05275.1.exon.3exon
Spo05275.1.exon.2Spo05275.1.exon.2exon
Spo05275.1.exon.1Spo05275.1.exon.1exon


Homology
[Close]
BLAST of Spo05275.1 vs. NCBI nr
Match: gi|902212504|gb|KNA16999.1| (hypothetical protein SOVF_083970 [Spinacia oleracea])

HSP 1 Score: 291.6 bits (745), Expect = 7.600e-76
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVGGFRRIYGGSKRNGSRP HFCKSSGAVARHILQQLEQVKIVEIDPKG
Sbjct: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGAVARHILQQLEQVKIVEIDPKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143
[Close]
BLAST of Spo05275.1 vs. NCBI nr
Match: gi|902175838|gb|KNA08672.1| (hypothetical protein SOVF_160510 [Spinacia oleracea])

HSP 1 Score: 281.2 bits (718), Expect = 1.000e-72
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARK+YLRGGLGVGGFRRIYGG++RNGSRP HFCKSSG+VARHILQQLE VKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143
[Close]
BLAST of Spo05275.1 vs. NCBI nr
Match: gi|685313580|ref|XP_009147386.1| (PREDICTED: 40S ribosomal protein S19-1 [Brassica rapa])

HSP 1 Score: 261.9 bits (668), Expect = 6.400e-67
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPSWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG +ARHILQQLE + IVEID KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVEIDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GR+ITSSGQRDLDQVAGRI VEV
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEV 143
[Close]
BLAST of Spo05275.1 vs. NCBI nr
Match: gi|731334810|ref|XP_010678410.1| (PREDICTED: 40S ribosomal protein S19-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 261.5 bits (667), Expect = 8.400e-67
Identity = 126/141 (89.36%), Postives = 132/141 (93.62%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M   +TVKDVSPHDFVK+YA+HLKRSGKMELP WTDIVKTGKLK+LAPYD DWYYIRAAS
Sbjct: 1   MAPSRTVKDVSPHDFVKSYASHLKRSGKMELPQWTDIVKTGKLKQLAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARK+YLRGGLGVGGFRRIYGGSKRNGSRP HFCKSSG+VARHILQQLE VKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGSVARHILQQLESVKIVEIDPKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGV 142
           GRKITSSGQRDLDQVA  IGV
Sbjct: 121 GRKITSSGQRDLDQVACTIGV 141
[Close]
BLAST of Spo05275.1 vs. NCBI nr
Match: gi|685287414|ref|XP_009134644.1| (PREDICTED: 40S ribosomal protein S19-1-like [Brassica rapa])

HSP 1 Score: 260.8 bits (665), Expect = 1.400e-66
Identity = 126/143 (88.11%), Postives = 131/143 (91.61%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPPWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG +ARHILQQLE + IVEID KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVEIDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GRKITSSGQRDLDQVAGRI  E+
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAEI 143
[Close]
BLAST of Spo05275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RDC9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083970 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.300e-76
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVGGFRRIYGGSKRNGSRP HFCKSSGAVARHILQQLEQVKIVEIDPKG
Sbjct: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPPHFCKSSGAVARHILQQLEQVKIVEIDPKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143
[Close]
BLAST of Spo05275.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QN50_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_160510 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.100e-73
Identity = 135/143 (94.41%), Postives = 139/143 (97.20%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYD DWYY RAAS
Sbjct: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDPDWYYTRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARK+YLRGGLGVGGFRRIYGG++RNGSRP HFCKSSG+VARHILQQLE VKIVEIDPKG
Sbjct: 61  MARKIYLRGGLGVGGFRRIYGGNQRNGSRPRHFCKSSGSVARHILQQLEAVKIVEIDPKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GRKITSSGQRDLDQVAGRIGVEV
Sbjct: 121 GRKITSSGQRDLDQVAGRIGVEV 143
[Close]
BLAST of Spo05275.1 vs. UniProtKB/TrEMBL
Match: A0A075QQM7_BRAOA (40S ribosomal protein S19 OS=Brassica oleracea var. alboglabra GN=BoB064L23.4 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.500e-67
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPSWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG +ARHILQQLE + IVEID KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVEIDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GR+ITSSGQRDLDQVAGRI VEV
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEV 143
[Close]
BLAST of Spo05275.1 vs. UniProtKB/TrEMBL
Match: A0A078I2A8_BRANA (BnaA01g33230D protein OS=Brassica napus GN=BnaC05g48560D PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.500e-67
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPSWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG +ARHILQQLE + IVEID KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVEIDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GR+ITSSGQRDLDQVAGRI VEV
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEV 143
[Close]
BLAST of Spo05275.1 vs. UniProtKB/TrEMBL
Match: M4FDH9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.500e-67
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPSWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG +ARHILQQLE + IVEID KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVEIDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GR+ITSSGQRDLDQVAGRI VEV
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEV 143
[Close]
BLAST of Spo05275.1 vs. ExPASy Swiss-Prot
Match: RS191_ARATH (40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.600e-68
Identity = 125/142 (88.03%), Postives = 131/142 (92.25%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVE 143
           GR+ITSSGQRDLDQVAGRI VE
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVE 142
[Close]
BLAST of Spo05275.1 vs. ExPASy Swiss-Prot
Match: RS192_ARATH (40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 2.900e-67
Identity = 122/142 (85.92%), Postives = 130/142 (91.55%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTG+LKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARK+YLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVE 143
           GR+ITSSGQRDLDQVAGRI  E
Sbjct: 121 GRRITSSGQRDLDQVAGRIAAE 142
[Close]
BLAST of Spo05275.1 vs. ExPASy Swiss-Prot
Match: RS193_ARATH (40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.800e-67
Identity = 124/143 (86.71%), Postives = 130/143 (90.91%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPH+FVKAYAAHLKRSGK+ELP WTDIVKTGKLKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG VARHILQQL+ + IV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GRKITSSGQRDLDQVAGRI   V
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAAV 143
[Close]
BLAST of Spo05275.1 vs. ExPASy Swiss-Prot
Match: RS19_ORYSJ (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.200e-58
Identity = 101/139 (72.66%), Postives = 124/139 (89.21%), Query Frame = 1 

		  

Query: 5   KTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAASMARK 64
           +TVKDV+PH+FVKAY+AHLKRSGKMELP W DIVKT + KEL PYD DWYY RAAS+ARK
Sbjct: 7   RTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARK 66

Query: 65  VYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKGGRKI 124
           +YLR G+GVGGF++IYGG +RNGSRP HFCKSSGA++R+ILQQL+++ I+++DPKGGR I
Sbjct: 67  IYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLI 126

Query: 125 TSSGQRDLDQVAGRIGVEV 144
           TS G+RDLDQVAGR+ V +
Sbjct: 127 TSQGRRDLDQVAGRVDVTI 145
[Close]
BLAST of Spo05275.1 vs. ExPASy Swiss-Prot
Match: RS19_MYAAR (40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.800e-46
Identity = 80/136 (58.82%), Postives = 110/136 (80.88%), Query Frame = 1 

		  

Query: 4   GKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAASMAR 63
           G +VKDVS H+F +A+AA LK+SGKM++P WTD VKTG  KEL+PY+ DWY+IRAAS+ R
Sbjct: 2   GISVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICR 61

Query: 64  KVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKGGRK 123
            +Y+R   G+G F +IYGG +R G+ PSHFCK++G+++R +LQ LE +KIVE DP GGR+
Sbjct: 62  HLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRR 121

Query: 124 ITSSGQRDLDQVAGRI 140
           +TS G+RDLD++A +I
Sbjct: 122 LTSQGRRDLDRIAAQI 137
[Close]
BLAST of Spo05275.1 vs. TAIR (Arabidopsis)
Match: AT3G02080.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 259.2 bits (661), Expect = 1.500e-69
Identity = 125/142 (88.03%), Postives = 131/142 (92.25%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTGKLKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVE 143
           GR+ITSSGQRDLDQVAGRI VE
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVE 142
[Close]
BLAST of Spo05275.1 vs. TAIR (Arabidopsis)
Match: AT5G15520.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 255.8 bits (652), Expect = 1.600e-68
Identity = 122/142 (85.92%), Postives = 130/142 (91.55%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPHDFVKAYA+HLKRSGK+ELP WTDIVKTG+LKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARK+YLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG +ARHILQQLE + IVE+D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVE 143
           GR+ITSSGQRDLDQVAGRI  E
Sbjct: 121 GRRITSSGQRDLDQVAGRIAAE 142
[Close]
BLAST of Spo05275.1 vs. TAIR (Arabidopsis)
Match: AT5G61170.1 (Ribosomal protein S19e family protein)

HSP 1 Score: 255.4 bits (651), Expect = 2.100e-68
Identity = 124/143 (86.71%), Postives = 130/143 (90.91%), Query Frame = 1 

		  

Query: 1   MEGGKTVKDVSPHDFVKAYAAHLKRSGKMELPHWTDIVKTGKLKELAPYDADWYYIRAAS 60
           M  GKTVKDVSPH+FVKAYAAHLKRSGK+ELP WTDIVKTGKLKELAPYD DWYYIRAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKVYLRGGLGVGGFRRIYGGSKRNGSRPSHFCKSSGAVARHILQQLEQVKIVEIDPKG 120
           MARKVYLRGGLGVG FRRIYGGSKRNGSRP HFCKSSG VARHILQQL+ + IV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRKITSSGQRDLDQVAGRIGVEV 144
           GRKITSSGQRDLDQVAGRI   V
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAAV 143
The following BLAST results are available for this feature:
BLAST of Spo05275.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902212504|gb|KNA16999.1|7.6e-7699.3hypothetical protein SOVF_0839... [more]
gi|902175838|gb|KNA08672.1|1.0e-7294.4hypothetical protein SOVF_1605... [more]
gi|685313580|ref|XP_009147386.1|6.4e-6788.8PREDICTED: 40S ribosomal prote... [more]
gi|731334810|ref|XP_010678410.1|8.4e-6789.3PREDICTED: 40S ribosomal prote... [more]
gi|685287414|ref|XP_009134644.1|1.4e-6688.1PREDICTED: 40S ribosomal prote... [more]
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BLAST of Spo05275.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RDC9_SPIOL5.3e-7699.3Uncharacterized protein OS=Spi... [more]
A0A0K9QN50_SPIOL7.1e-7394.4Uncharacterized protein OS=Spi... [more]
A0A075QQM7_BRAOA4.5e-6788.840S ribosomal protein S19 OS=B... [more]
A0A078I2A8_BRANA4.5e-6788.8BnaA01g33230D protein OS=Brass... [more]
M4FDH9_BRARP4.5e-6788.8Uncharacterized protein OS=Bra... [more]
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BLAST of Spo05275.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS191_ARATH2.6e-6888.040S ribosomal protein S19-1 OS... [more]
RS192_ARATH2.9e-6785.940S ribosomal protein S19-2 OS... [more]
RS193_ARATH3.8e-6786.740S ribosomal protein S19-3 OS... [more]
RS19_ORYSJ3.2e-5872.640S ribosomal protein S19 OS=O... [more]
RS19_MYAAR4.8e-4658.840S ribosomal protein S19 OS=M... [more]
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BLAST of Spo05275.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G02080.11.5e-6988.0Ribosomal protein S19e family ... [more]
AT5G15520.11.6e-6885.9Ribosomal protein S19e family ... [more]
AT5G61170.12.1e-6886.7Ribosomal protein S19e family ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19ePRODOMPD003854coord: 4..120
score: 6.0
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 4..143
score: 3.8
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 6..139
score: 3.4
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..142
score: 3.7
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 97..139
score: 3.
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 6..141
score: 1.09
IPR018277Ribosomal protein S19e, conserved sitePROSITEPS00628RIBOSOMAL_S19Ecoord: 90..109
scor

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0001510 RNA methylation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0005618 cell wall
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016020 membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0009506 plasmodesma
molecular_function GO:0003735 structural constituent of ribosome