Spo08048.1 (mRNA)

Overview
NameSpo08048.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionAdenine nucleotide alpha hydrolases-like protein
Locationchr5 : 13714027 .. 13716614 (+)
Sequence length723
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGGTTGGCTATGAGACATGATAACATAACAAAGACATTAAATTGCAAAGTTCTTGCAATCAAACAACCAATAAGGCCGTTATCTTCATCGTCATCGGCATCGGCAAACCAGACAAGTTATACAAAATCAAATAATACAGCATGCATCACACAACTCCAAGCTTCACTCACTTTGGACTTTTCTCAAATCGAAGTTGCTCCTTTGCTGTAAGATTCCTTCCTTTTTCTACTAATACATTTTTTTTTTCCATAAAGATGTTTACGGTTATTATTTGCACAAAAATTAAGACAAAAGTAGAAAAGTTGGTTGGATATAATAAAATATGTATAAAGTAAAAGAAATGTGTAGAAACTAGAAAGGTAGGTGGACGTAAAAAAATGAATAAAGTAAGAGAAAAAGAGTGGAAATTTGTAAATATTGTGATAAGAATGTTAAAGTTGTAAATTTTGGTGTCCAAAAACAGAATAAAACCAAATATAATTAAACCTCATAAGACATTTAGAAACTAGCAAGCTATGATCTTAGTTTGAACCTAGTTATTGTCCCATATGATGAATTATTCATCTAATTTATTACTACTCCTCCGTCTCGGAATACACGCACCGGTTCGAGTCGACACGCTTGCCAATGCACAACTTTGACCACCAATATCTTTAACTACATATTAGTATAAAAACTTATGAAATATTAATATTTTCAAAATATATGTTAAGATGAAGCCAACAATATATTATATGCTAACTTTTGTTTTCATATACTAGAAATAAAATAGGGTCAAAGTGAATTATGCGAATAGTGCAAAAAGTCAAATCGGTGTGTATTCCGGGACGGAGGGAATATCAAATTAGATATATACTTGCAAATTTGATAGATTAAGTTTTAGAAACAATACAACTTGCATAATGAAATAGTTAACACCGTTGAACTTTAAAATGGAGTCTTGTGACTAAACATACATCCAATCAAGTTAGTATTTCATTTGTTCTTTGCCTTTGTTTTTGTACCCCTTGTTTGCCTTTTGACTCCCTTTTCCAATATTCTATTAGAAACTAAAGGAGAAATTGTTTACTAAATAAACACTAATAAGTTCAGTTTCTTTTGGTAGCATTGCCAAGTTATATACGTAGTACGGAATAATTAAATAATGGACGAATTTTGTAACATGGTAGTACTATTAAAAGAACCGGTACTTGATAGATTTCTTTCTAAACTGGATATAATTAATAAGCATTTTTTCACAAAAATTGGAACATATTAGATAGTTTCTGATAATTTTTCCAAAATTAAATTACATAGGATTCTATCATTACGTTTTCTTAGAGTAAAATTAAAGATGATAGCAATCATGTTAATGGCTGATATTGTACATGTAGTGCATGTAGATGTAGACAAAGATGCAAATTAAAATAAACTGCATATGTCAGGCAATAATTTTTTTTCTTTTTGAAACTTAAAATATTAGATCATTTAGGTTAGCTAAGATTGGTCTTAGCATGCATGTCAATTGTTCCATTTTTGCGAGAAAAAGTGCCAAGTGATGGTGTGGTGTAACTTTACATTAGTAGATGGAAATTAATTTTGACACATCTGTTAAATTGTGAGCCCATAAATGAAATTGCGCTCTCATGGTACATATGATCTTTTTCTAGTGTGCCAAAATTTATTTCACGATTCATGTATGTGAAAGGACCAAAATGATTATACTTTTTTCGTTTCGGAAATATCGCACCATGGTTGACTTTTACTCCTTTAATCATTACTTTGACTCTTAATATCTCAAATCGTGTGCAAGTAAAAATTGTAATAAAATAATATTTAGAAAATATATATCAATACGAATCTAACATAACCCCACATGACTAAAATTTCCTTACGTACGAATTACAAAAAATGACCAAAGTCGTAGTGTGAATAATGTAAAAAATAAATGGTGCGATATTTCCGGAACGGAGGAAGTATTGAAGTTAATTGAACCTGGGTCGGACCGTCAAAGGTGTAACATACTCTGAATGAATAATTGATCGAATATCTCAAAGTATGTGACGATTTGATAATGGGTTTTTTGTTGCAGAGTCCCAAATATCAGCCCACAAAAGATTCCATACCAAATATGTCCAGACCCATCTGCAATTATATGGAGATCCAAGAAGAATAGGAGGAGATCACGCAGGAATTCATAGTTTATATATGTTCATGTATCTACACTTCCTTGTGTTTCATTTTACTCTTTCTTATGAGTTTTGGCTCTTTTATAGCTCATCTCATGTAATTCTTGCTCCTTTTTTTAACCACTTTTACCTAGGGTTGATGGAGATTTTTACTGTATAACTAGTTGTTCTTGCTCTTTCTTTGTTAATGTACTTGTAACTTGCGAGTACATAAGCAAAGAAATAGTGTTGGTTATACCATCTAGTCATTTTTAAGGTACAACTAGTTATACATAGAAAACCGTCAGATTTGATGTGGCTCTTGGTTTGCTAATCCAGAAATTCAACAAAGTAAAGTAGTTGAAAATTTGAAATCATTGTTTGTCATAAATTAAGACCTCATTATTCTTTACGTGCACTGTTATTATACTAGCG

mRNA sequence

ATGGGCAGGTTGGCTATGAGACATGATAACATAACAAAGACATTAAATTGCAAAGTTCTTGCAATCAAACAACCAATAAGGCCGTTATCTTCATCGTCATCGGCATCGGCAAACCAGACAAGTTATACAAAATCAAATAATACAGCATGCATCACACAACTCCAAGCTTCACTCACTTTGGACTTTTCTCAAATCGAAGTTGCTCCTTTGCTAGTCCCAAATATCAGCCCACAAAAGATTCCATACCAAATATGTCCAGACCCATCTGCAATTATATGGAGATCCAAGAAGAATAGGAGGAGATCACGCAGGAATTCATAGTTTATATATGTTCATGTATCTACACTTCCTTGTGTTTCATTTTACTCTTTCTTATGAGTTTTGGCTCTTTTATAGCTCATCTCATGTAATTCTTGCTCCTTTTTTTAACCACTTTTACCTAGGGTTGATGGAGATTTTTACTGTATAACTAGTTGTTCTTGCTCTTTCTTTGTTAATGTACTTGTAACTTGCGAGTACATAAGCAAAGAAATAGTGTTGGTTATACCATCTAGTCATTTTTAAGGTACAACTAGTTATACATAGAAAACCGTCAGATTTGATGTGGCTCTTGGTTTGCTAATCCAGAAATTCAACAAAGTAAAGTAGTTGAAAATTTGAAATCATTGTTTGTCATAAATTAAGACCTCATTATTCTTTACGTGCACTGTTATTATACTAGCG

Coding sequence (CDS)

ATGGGCAGGTTGGCTATGAGACATGATAACATAACAAAGACATTAAATTGCAAAGTTCTTGCAATCAAACAACCAATAAGGCCGTTATCTTCATCGTCATCGGCATCGGCAAACCAGACAAGTTATACAAAATCAAATAATACAGCATGCATCACACAACTCCAAGCTTCACTCACTTTGGACTTTTCTCAAATCGAAGTTGCTCCTTTGCTAGTCCCAAATATCAGCCCACAAAAGATTCCATACCAAATATGTCCAGACCCATCTGCAATTATATGGAGATCCAAGAAGAATAGGAGGAGATCACGCAGGAATTCATAG

Protein sequence

MGRLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTLDFSQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRRNS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo08048Spo08048gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo08048.1Spo08048.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08048.1.exon.1Spo08048.1.exon.1exon
Spo08048.1.exon.2Spo08048.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08048.1.CDS.1Spo08048.1.CDS.1CDS
Spo08048.1.CDS.2Spo08048.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08048.1.utr3p.1Spo08048.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo08048.1 vs. NCBI nr
Match: gi|902192183|gb|KNA11981.1| (hypothetical protein SOVF_130080 [Spinacia oleracea])

HSP 1 Score: 201.8 bits (512), Expect = 5.800e-49
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 1 

		  

Query: 1   MGRLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTL 60
           MGRLAMRHDNITKTLNCKVLAIKQPIRP SSSSSASANQTSYTKSNNTACITQLQASLTL
Sbjct: 1   MGRLAMRHDNITKTLNCKVLAIKQPIRPSSSSSSASANQTSYTKSNNTACITQLQASLTL 60

Query: 61  DFSQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRRNS 107
           DFSQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRRNS
Sbjct: 61  DFSQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRRNS 106
[Close]
BLAST of Spo08048.1 vs. NCBI nr
Match: gi|731367440|ref|XP_010695612.1| (PREDICTED: uncharacterized protein LOC104908217 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 127.1 bits (318), Expect = 1.800e-26
Identity = 72/102 (70.59%), Postives = 78/102 (76.47%), Query Frame = 1 

		  

Query: 3   RLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTLDF 62
           RLAMRH+NITKTLNCKVLAIKQP RP SS+S       S          TQL+ASLTL+F
Sbjct: 121 RLAMRHNNITKTLNCKVLAIKQP-RPSSSASGLPTKSCS--------SFTQLEASLTLEF 180

Query: 63  SQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRR 105
           SQIEVAPL VP+ +PQKIPYQICP PSAIIWRSKK RRRS R
Sbjct: 181 SQIEVAPLQVPHFTPQKIPYQICPSPSAIIWRSKKTRRRSHR 213
[Close]
BLAST of Spo08048.1 vs. NCBI nr
Match: gi|870844615|gb|KMS97539.1| (hypothetical protein BVRB_5g126000 isoform A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 127.1 bits (318), Expect = 1.800e-26
Identity = 72/102 (70.59%), Postives = 78/102 (76.47%), Query Frame = 1 

		  

Query: 3   RLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTLDF 62
           RLAMRH+NITKTLNCKVLAIKQP RP SS+S       S          TQL+ASLTL+F
Sbjct: 111 RLAMRHNNITKTLNCKVLAIKQP-RPSSSASGLPTKSCS--------SFTQLEASLTLEF 170

Query: 63  SQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRR 105
           SQIEVAPL VP+ +PQKIPYQICP PSAIIWRSKK RRRS R
Sbjct: 171 SQIEVAPLQVPHFTPQKIPYQICPSPSAIIWRSKKTRRRSHR 203
[Close]
BLAST of Spo08048.1 vs. NCBI nr
Match: gi|694319347|ref|XP_009346683.1| (PREDICTED: uncharacterized protein LOC103938404 [Pyrus x bretschneideri])

HSP 1 Score: 94.7 bits (234), Expect = 1.000e-16
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1 

		  

Query: 3   RLAMRHDN--ITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTL 62
           RLAM H +  I   LNCKVLAIKQP  P SSS  +S  +TS T +N       L +S  +
Sbjct: 115 RLAMSHSSTSIANNLNCKVLAIKQP--PPSSSPLSSKRRTSSTNTNGAVTQALLDSSTNM 174

Query: 63  DFSQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRR 102
           DFSQI++  L VP++ P K+PY+ICP+P AIIW+S+K+RRR
Sbjct: 175 DFSQIDIGGLRVPDVPPPKVPYRICPNPYAIIWKSRKSRRR 213
[Close]
BLAST of Spo08048.1 vs. NCBI nr
Match: gi|1009131850|ref|XP_015883065.1| (PREDICTED: uncharacterized protein LOC107418888 [Ziziphus jujuba])

HSP 1 Score: 89.4 bits (220), Expect = 4.200e-15
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1 

		  

Query: 3   RLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTLDF 62
           +LAM H+N++ + NC+VLA+KQP  P S S +             T  ++ L  S  +DF
Sbjct: 115 KLAMAHNNVSNSFNCRVLAVKQP--PSSPSGT------------RTHAVSVLDGSTNMDF 174

Query: 63  SQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRR 102
           SQIE+A L +P++ P KIPY+ICP PSAIIWRS+K+RR+
Sbjct: 175 SQIEIAGLHLPDLPPPKIPYRICPSPSAIIWRSRKSRRK 199
[Close]
BLAST of Spo08048.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZK3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_130080 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.100e-49
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 1 

		  

Query: 1   MGRLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTL 60
           MGRLAMRHDNITKTLNCKVLAIKQPIRP SSSSSASANQTSYTKSNNTACITQLQASLTL
Sbjct: 1   MGRLAMRHDNITKTLNCKVLAIKQPIRPSSSSSSASANQTSYTKSNNTACITQLQASLTL 60

Query: 61  DFSQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRRNS 107
           DFSQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRRNS
Sbjct: 61  DFSQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRRNS 106
[Close]
BLAST of Spo08048.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8F9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g126000 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.300e-26
Identity = 72/102 (70.59%), Postives = 78/102 (76.47%), Query Frame = 1 

		  

Query: 3   RLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTLDF 62
           RLAMRH+NITKTLNCKVLAIKQP RP SS+S       S          TQL+ASLTL+F
Sbjct: 111 RLAMRHNNITKTLNCKVLAIKQP-RPSSSASGLPTKSCS--------SFTQLEASLTLEF 170

Query: 63  SQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRR 105
           SQIEVAPL VP+ +PQKIPYQICP PSAIIWRSKK RRRS R
Sbjct: 171 SQIEVAPLQVPHFTPQKIPYQICPSPSAIIWRSKKTRRRSHR 203
[Close]
BLAST of Spo08048.1 vs. UniProtKB/TrEMBL
Match: A0A059CZ95_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00688 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.900e-15
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 1 

		  

Query: 3   RLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTLDF 62
           +LAM HD+I    NC+VLAI+QP              +S   S  T  IT   +S+ LDF
Sbjct: 117 KLAMTHDDIASNFNCRVLAIRQP-------------PSSPFSSTKTHVITTDASSINLDF 176

Query: 63  SQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRR 102
           SQ+++ PL +P+I P KIPY++CP+PSAIIWRS+K RRR
Sbjct: 177 SQVDMTPLDLPDIHPPKIPYRLCPNPSAIIWRSRKPRRR 202
[Close]
BLAST of Spo08048.1 vs. UniProtKB/TrEMBL
Match: A0A068TQE0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022592001 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.500e-14
Identity = 46/99 (46.46%), Postives = 61/99 (61.62%), Query Frame = 1 

		  

Query: 3   RLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTLDF 62
           +LA  H+N+   LNCKVLA+K P                   S  T  I+   +S  +DF
Sbjct: 115 KLATDHNNVVNALNCKVLAVKAPT------------------SMATRTISVPDSSTNMDF 174

Query: 63  SQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRR 102
           SQIE++ L +P+I PQKIPYQ+CPDPSAIIWRS+++ RR
Sbjct: 175 SQIEISALSIPDIPPQKIPYQLCPDPSAIIWRSRRSLRR 195
[Close]
BLAST of Spo08048.1 vs. UniProtKB/TrEMBL
Match: K4BMD3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.600e-14
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 1 

		  

Query: 3   RLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTACITQLQASLTLDF 62
           R+AM H++    LNCKVLAIKQP  PL+++          TK   T  I+   +S  +D 
Sbjct: 121 RMAMDHNSTGSNLNCKVLAIKQPT-PLATT----------TKMKRT--ISLPNSSTNMDL 180

Query: 63  SQIEVAPLLVPNISPQKIPYQICPDPSAIIWRSKKNRRRSRRN 106
           SQIE+A   VP I+P KIPYQ+CPDPSAIIWR  ++RR +RR+
Sbjct: 181 SQIEIAASSVPEINPPKIPYQVCPDPSAIIWRKGRSRRCTRRD 210
[Close]
BLAST of Spo08048.1 vs. TAIR (Arabidopsis)
Match: AT1G48960.1 (Adenine nucleotide alpha hydrolases-like superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 7.200e-13
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 1 

		  

Query: 3   RLAMRHDNITKTLNCKVLAIKQPIRPLSSSSSASANQTSYTKSNNTA-CITQLQASLTLD 62
           R A+   ++ +  NCKV+AIKQP   LS       ++TS   +  T+ C+T        D
Sbjct: 117 RWAISGIDVARNFNCKVMAIKQPSPELSPPVKVKGHKTSKATATATSDCLTNF------D 176

Query: 63  FSQIEVAPLLVPNI-SPQKIPYQICPDPSAIIWRSKKNRR 101
           FSQIE++ L VP I +P K+PY++CP P AI+WR++  RR
Sbjct: 177 FSQIEISGLQVPEIPTPTKVPYRLCPSPHAILWRTRPRRR 210
The following BLAST results are available for this feature:
BLAST of Spo08048.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902192183|gb|KNA11981.1|5.8e-4999.0hypothetical protein SOVF_1300... [more]
gi|731367440|ref|XP_010695612.1|1.8e-2670.5PREDICTED: uncharacterized pro... [more]
gi|870844615|gb|KMS97539.1|1.8e-2670.5hypothetical protein BVRB_5g12... [more]
gi|694319347|ref|XP_009346683.1|1.0e-1652.4PREDICTED: uncharacterized pro... [more]
gi|1009131850|ref|XP_015883065.1|4.2e-1547.4PREDICTED: uncharacterized pro... [more]
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BLAST of Spo08048.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QZK3_SPIOL4.1e-4999.0Uncharacterized protein OS=Spi... [more]
A0A0J8B8F9_BETVU1.3e-2670.5Uncharacterized protein OS=Bet... [more]
A0A059CZ95_EUCGR2.9e-1548.4Uncharacterized protein OS=Euc... [more]
A0A068TQE0_COFCA2.5e-1446.4Uncharacterized protein OS=Cof... [more]
K4BMD3_SOLLC5.6e-1449.5Uncharacterized protein OS=Sol... [more]
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BLAST of Spo08048.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08048.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G48960.17.2e-1341.0Adenine nucleotide alpha hydro... [more]
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